Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06110

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06100 and MMP_RS06105 are separated by 127 nucleotidesMMP_RS06105 and MMP_RS06110 are separated by 12 nucleotidesMMP_RS06110 and MMP_RS06115 are separated by 30 nucleotidesMMP_RS06115 and MMP_RS06120 are separated by 71 nucleotides MMP_RS06100: MMP_RS06100 - GNAT family N-acetyltransferase, at 1,167,389 to 1,167,907 _RS06100 MMP_RS06105: MMP_RS06105 - hydrogenase maturation peptidase HycI, at 1,168,035 to 1,168,574 _RS06105 MMP_RS06110: MMP_RS06110 - ATP-dependent protease LonB, at 1,168,587 to 1,170,665 _RS06110 MMP_RS06115: MMP_RS06115 - class II aldolase/adducin family protein, at 1,170,696 to 1,171,238 _RS06115 MMP_RS06120: MMP_RS06120 - UPF0147 family protein, at 1,171,310 to 1,171,585 _RS06120 Position (kb) 1168 1169 1170 1171Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1167.635 kb on + strand, within MMP_RS06100at 1167.635 kb on + strand, within MMP_RS06100at 1167.635 kb on + strand, within MMP_RS06100at 1167.636 kb on - strand, within MMP_RS06100at 1167.637 kb on + strand, within MMP_RS06100at 1167.638 kb on - strand, within MMP_RS06100at 1167.639 kb on + strand, within MMP_RS06100at 1167.653 kb on + strand, within MMP_RS06100at 1167.707 kb on + strand, within MMP_RS06100at 1167.740 kb on + strand, within MMP_RS06100at 1167.741 kb on - strand, within MMP_RS06100at 1167.742 kb on + strand, within MMP_RS06100at 1167.833 kb on + strand, within MMP_RS06100at 1167.841 kb on - strand, within MMP_RS06100at 1167.842 kb on + strand, within MMP_RS06100at 1167.852 kb on - strand, within MMP_RS06100at 1167.857 kb on - strandat 1167.857 kb on - strandat 1167.857 kb on - strandat 1167.889 kb on - strandat 1167.929 kb on + strandat 1167.961 kb on + strandat 1167.962 kb on - strandat 1167.964 kb on - strandat 1167.964 kb on - strandat 1167.964 kb on - strandat 1167.965 kb on + strandat 1167.965 kb on + strandat 1167.966 kb on - strandat 1167.966 kb on - strandat 1167.966 kb on - strandat 1167.967 kb on + strandat 1167.974 kb on - strandat 1167.975 kb on + strandat 1167.986 kb on - strandat 1167.989 kb on - strandat 1167.989 kb on - strandat 1167.990 kb on + strandat 1167.990 kb on + strandat 1167.991 kb on - strandat 1167.991 kb on - strandat 1167.994 kb on + strandat 1167.994 kb on + strandat 1167.996 kb on + strandat 1167.996 kb on + strandat 1167.996 kb on + strandat 1167.996 kb on + strandat 1167.996 kb on + strandat 1168.053 kb on + strandat 1168.059 kb on + strandat 1168.067 kb on - strandat 1168.097 kb on + strand, within MMP_RS06105at 1168.097 kb on + strand, within MMP_RS06105at 1168.097 kb on + strand, within MMP_RS06105at 1168.101 kb on + strand, within MMP_RS06105at 1168.141 kb on + strand, within MMP_RS06105at 1168.216 kb on - strand, within MMP_RS06105at 1168.220 kb on - strand, within MMP_RS06105at 1168.228 kb on - strand, within MMP_RS06105at 1168.249 kb on - strand, within MMP_RS06105at 1168.250 kb on + strand, within MMP_RS06105at 1168.322 kb on + strand, within MMP_RS06105at 1168.412 kb on + strand, within MMP_RS06105at 1168.415 kb on + strand, within MMP_RS06105at 1168.419 kb on + strand, within MMP_RS06105at 1168.422 kb on - strand, within MMP_RS06105at 1168.454 kb on + strand, within MMP_RS06105at 1168.458 kb on + strand, within MMP_RS06105at 1168.465 kb on - strand, within MMP_RS06105at 1168.586 kb on - strandat 1168.803 kb on - strand, within MMP_RS06110at 1168.849 kb on - strand, within MMP_RS06110at 1169.141 kb on + strand, within MMP_RS06110at 1169.362 kb on - strand, within MMP_RS06110at 1169.962 kb on - strand, within MMP_RS06110at 1169.990 kb on - strand, within MMP_RS06110at 1169.993 kb on + strand, within MMP_RS06110at 1170.025 kb on - strand, within MMP_RS06110at 1170.200 kb on - strand, within MMP_RS06110at 1170.662 kb on + strandat 1170.669 kb on - strandat 1170.672 kb on - strandat 1170.713 kb on - strandat 1170.735 kb on - strandat 1170.773 kb on + strand, within MMP_RS06115at 1170.797 kb on + strand, within MMP_RS06115at 1170.798 kb on - strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.800 kb on - strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.803 kb on - strand, within MMP_RS06115at 1170.846 kb on + strand, within MMP_RS06115at 1170.846 kb on + strand, within MMP_RS06115at 1170.878 kb on + strand, within MMP_RS06115at 1170.878 kb on + strand, within MMP_RS06115at 1170.891 kb on + strand, within MMP_RS06115at 1170.950 kb on + strand, within MMP_RS06115at 1171.051 kb on + strand, within MMP_RS06115at 1171.051 kb on + strand, within MMP_RS06115at 1171.173 kb on - strand, within MMP_RS06115at 1171.174 kb on + strand, within MMP_RS06115at 1171.211 kb on + strandat 1171.215 kb on - strandat 1171.216 kb on + strandat 1171.220 kb on - strandat 1171.220 kb on - strandat 1171.221 kb on + strandat 1171.221 kb on + strandat 1171.232 kb on + strandat 1171.242 kb on + strandat 1171.255 kb on + strandat 1171.307 kb on - strandat 1171.337 kb on - strandat 1171.338 kb on + strand, within MMP_RS06120at 1171.338 kb on + strand, within MMP_RS06120at 1171.375 kb on - strand, within MMP_RS06120at 1171.541 kb on + strand, within MMP_RS06120at 1171.647 kb on - strandat 1171.654 kb on - strandat 1171.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,167,635 + MMP_RS06100 0.47 +0.1
1,167,635 + MMP_RS06100 0.47 +0.0
1,167,635 + MMP_RS06100 0.47 +0.3
1,167,636 - MMP_RS06100 0.48 +0.2
1,167,637 + MMP_RS06100 0.48 +0.9
1,167,638 - MMP_RS06100 0.48 +0.3
1,167,639 + MMP_RS06100 0.48 -0.3
1,167,653 + MMP_RS06100 0.51 +0.4
1,167,707 + MMP_RS06100 0.61 +0.4
1,167,740 + MMP_RS06100 0.68 +0.3
1,167,741 - MMP_RS06100 0.68 +0.3
1,167,742 + MMP_RS06100 0.68 +0.4
1,167,833 + MMP_RS06100 0.86 +0.5
1,167,841 - MMP_RS06100 0.87 +0.3
1,167,842 + MMP_RS06100 0.87 +0.6
1,167,852 - MMP_RS06100 0.89 -0.2
1,167,857 - -0.1
1,167,857 - +0.3
1,167,857 - +0.5
1,167,889 - -0.0
1,167,929 + -0.4
1,167,961 + +0.6
1,167,962 - +0.3
1,167,964 - -6.8
1,167,964 - -6.8
1,167,964 - -5.3
1,167,965 + -3.4
1,167,965 + -3.3
1,167,966 - -4.5
1,167,966 - -6.2
1,167,966 - -6.2
1,167,967 + -4.4
1,167,974 - -6.1
1,167,975 + -5.4
1,167,986 - -2.7
1,167,989 - -6.1
1,167,989 - -5.3
1,167,990 + -4.6
1,167,990 + -6.3
1,167,991 - -4.4
1,167,991 - -5.7
1,167,994 + -2.2
1,167,994 + -4.0
1,167,996 + -3.3
1,167,996 + -4.5
1,167,996 + -6.0
1,167,996 + -3.7
1,167,996 + -4.0
1,168,053 + -5.0
1,168,059 + -5.8
1,168,067 - -6.2
1,168,097 + MMP_RS06105 0.11 -7.2
1,168,097 + MMP_RS06105 0.11 -7.3
1,168,097 + MMP_RS06105 0.11 -5.0
1,168,101 + MMP_RS06105 0.12 -6.4
1,168,141 + MMP_RS06105 0.20 -5.9
1,168,216 - MMP_RS06105 0.34 -6.0
1,168,220 - MMP_RS06105 0.34 -5.2
1,168,228 - MMP_RS06105 0.36 -6.0
1,168,249 - MMP_RS06105 0.40 -3.4
1,168,250 + MMP_RS06105 0.40 -6.1
1,168,322 + MMP_RS06105 0.53 -6.6
1,168,412 + MMP_RS06105 0.70 -6.2
1,168,415 + MMP_RS06105 0.70 -4.9
1,168,419 + MMP_RS06105 0.71 -3.8
1,168,422 - MMP_RS06105 0.72 -2.9
1,168,454 + MMP_RS06105 0.78 -4.8
1,168,458 + MMP_RS06105 0.78 -5.2
1,168,465 - MMP_RS06105 0.80 -4.8
1,168,586 - -2.8
1,168,803 - MMP_RS06110 0.10 -2.4
1,168,849 - MMP_RS06110 0.13 -5.0
1,169,141 + MMP_RS06110 0.27 -3.1
1,169,362 - MMP_RS06110 0.37 -3.6
1,169,962 - MMP_RS06110 0.66 -3.0
1,169,990 - MMP_RS06110 0.67 -3.1
1,169,993 + MMP_RS06110 0.68 -3.7
1,170,025 - MMP_RS06110 0.69 -3.4
1,170,200 - MMP_RS06110 0.78 -3.9
1,170,662 + +0.1
1,170,669 - -0.3
1,170,672 - +0.4
1,170,713 - +0.0
1,170,735 - +0.4
1,170,773 + MMP_RS06115 0.14 -0.3
1,170,797 + MMP_RS06115 0.19 +0.8
1,170,798 - MMP_RS06115 0.19 +0.5
1,170,799 + MMP_RS06115 0.19 +0.2
1,170,799 + MMP_RS06115 0.19 -0.4
1,170,799 + MMP_RS06115 0.19 -0.4
1,170,799 + MMP_RS06115 0.19 -0.1
1,170,799 + MMP_RS06115 0.19 +0.4
1,170,799 + MMP_RS06115 0.19 +0.9
1,170,799 + MMP_RS06115 0.19 -0.1
1,170,800 - MMP_RS06115 0.19 +1.0
1,170,801 + MMP_RS06115 0.19 +0.6
1,170,801 + MMP_RS06115 0.19 +0.3
1,170,801 + MMP_RS06115 0.19 +0.2
1,170,803 - MMP_RS06115 0.20 +0.4
1,170,846 + MMP_RS06115 0.28 +0.4
1,170,846 + MMP_RS06115 0.28 +0.4
1,170,878 + MMP_RS06115 0.34 +0.2
1,170,878 + MMP_RS06115 0.34 +0.0
1,170,891 + MMP_RS06115 0.36 +0.3
1,170,950 + MMP_RS06115 0.47 +0.8
1,171,051 + MMP_RS06115 0.65 +0.3
1,171,051 + MMP_RS06115 0.65 +0.1
1,171,173 - MMP_RS06115 0.88 +0.6
1,171,174 + MMP_RS06115 0.88 -0.2
1,171,211 + +0.7
1,171,215 - +0.2
1,171,216 + +0.4
1,171,220 - +0.5
1,171,220 - +0.3
1,171,221 + +0.7
1,171,221 + -0.0
1,171,232 + +0.7
1,171,242 + +1.0
1,171,255 + +0.1
1,171,307 - +0.9
1,171,337 - -4.2
1,171,338 + MMP_RS06120 0.10 -0.8
1,171,338 + MMP_RS06120 0.10 -4.9
1,171,375 - MMP_RS06120 0.24 -5.1
1,171,541 + MMP_RS06120 0.84 -4.4
1,171,647 - -1.6
1,171,654 - -5.4
1,171,654 - -6.0

Or see this region's nucleotide sequence