Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06020

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06010 and MMP_RS06015 are separated by 164 nucleotidesMMP_RS06015 and MMP_RS06020 are separated by 2 nucleotidesMMP_RS06020 and MMP_RS06025 are separated by 0 nucleotidesMMP_RS06025 and MMP_RS06030 overlap by 31 nucleotides MMP_RS06010: MMP_RS06010 - heavy metal translocating P-type ATPase, at 1,148,331 to 1,150,502 _RS06010 MMP_RS06015: MMP_RS06015 - flavodoxin family protein, at 1,150,667 to 1,151,260 _RS06015 MMP_RS06020: MMP_RS06020 - archaeoflavoprotein AfpA, at 1,151,263 to 1,151,817 _RS06020 MMP_RS06025: MMP_RS06025 - ABC transporter ATP-binding protein, at 1,151,818 to 1,152,564 _RS06025 MMP_RS06030: MMP_RS06030 - SufD family Fe-S cluster assembly protein, at 1,152,534 to 1,153,790 _RS06030 Position (kb) 1151 1152Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1150.350 kb on - strandat 1150.397 kb on - strandat 1150.448 kb on - strandat 1150.501 kb on + strandat 1150.503 kb on - strandat 1150.506 kb on + strandat 1150.510 kb on - strandat 1150.511 kb on + strandat 1150.514 kb on + strandat 1150.514 kb on + strandat 1150.514 kb on + strandat 1150.517 kb on - strandat 1150.521 kb on - strandat 1150.522 kb on + strandat 1150.580 kb on - strandat 1150.595 kb on - strandat 1150.596 kb on + strandat 1150.623 kb on - strandat 1150.626 kb on + strandat 1150.728 kb on + strand, within MMP_RS06015at 1150.769 kb on - strand, within MMP_RS06015at 1150.771 kb on - strand, within MMP_RS06015at 1150.806 kb on - strand, within MMP_RS06015at 1150.818 kb on + strand, within MMP_RS06015at 1150.922 kb on + strand, within MMP_RS06015at 1150.975 kb on + strand, within MMP_RS06015at 1150.989 kb on - strand, within MMP_RS06015at 1151.085 kb on + strand, within MMP_RS06015at 1151.315 kb on - strandat 1151.323 kb on + strand, within MMP_RS06020at 1151.400 kb on - strand, within MMP_RS06020at 1151.626 kb on - strand, within MMP_RS06020at 1151.626 kb on - strand, within MMP_RS06020at 1151.627 kb on + strand, within MMP_RS06020at 1151.696 kb on - strand, within MMP_RS06020at 1151.696 kb on - strand, within MMP_RS06020at 1151.696 kb on - strand, within MMP_RS06020at 1151.697 kb on + strand, within MMP_RS06020at 1151.699 kb on + strand, within MMP_RS06020at 1151.755 kb on + strand, within MMP_RS06020at 1151.789 kb on - strandat 1151.805 kb on - strandat 1152.016 kb on + strandat 1152.344 kb on - strandat 1152.409 kb on - strandat 1152.775 kb on - strandat 1152.776 kb on + strandat 1152.803 kb on + strandat 1152.803 kb on + strandat 1152.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,150,350 - -0.3
1,150,397 - +0.7
1,150,448 - +0.3
1,150,501 + +0.3
1,150,503 - +0.3
1,150,506 + +0.8
1,150,510 - +0.3
1,150,511 + +0.2
1,150,514 + +0.2
1,150,514 + +0.0
1,150,514 + +0.8
1,150,517 - +0.3
1,150,521 - +0.5
1,150,522 + +0.0
1,150,580 - +0.6
1,150,595 - +0.5
1,150,596 + +0.3
1,150,623 - +0.5
1,150,626 + +0.9
1,150,728 + MMP_RS06015 0.10 +0.6
1,150,769 - MMP_RS06015 0.17 -1.8
1,150,771 - MMP_RS06015 0.18 -2.1
1,150,806 - MMP_RS06015 0.23 -0.6
1,150,818 + MMP_RS06015 0.25 +0.7
1,150,922 + MMP_RS06015 0.43 +1.1
1,150,975 + MMP_RS06015 0.52 +1.1
1,150,989 - MMP_RS06015 0.54 -2.0
1,151,085 + MMP_RS06015 0.70 +0.2
1,151,315 - -5.8
1,151,323 + MMP_RS06020 0.11 -5.1
1,151,400 - MMP_RS06020 0.25 -4.8
1,151,626 - MMP_RS06020 0.65 -5.2
1,151,626 - MMP_RS06020 0.65 -4.3
1,151,627 + MMP_RS06020 0.66 -4.6
1,151,696 - MMP_RS06020 0.78 -4.1
1,151,696 - MMP_RS06020 0.78 -4.9
1,151,696 - MMP_RS06020 0.78 -4.4
1,151,697 + MMP_RS06020 0.78 -5.4
1,151,699 + MMP_RS06020 0.79 -4.4
1,151,755 + MMP_RS06020 0.89 -4.3
1,151,789 - -4.3
1,151,805 - -5.2
1,152,016 + -3.2
1,152,344 - -3.8
1,152,409 - -3.4
1,152,775 - -2.6
1,152,776 + -3.6
1,152,803 + -5.1
1,152,803 + -4.3
1,152,806 - -3.1

Or see this region's nucleotide sequence