Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06010 and MMP_RS06015 are separated by 164 nucleotides MMP_RS06015 and MMP_RS06020 are separated by 2 nucleotides MMP_RS06020 and MMP_RS06025 are separated by 0 nucleotides MMP_RS06025 and MMP_RS06030 overlap by 31 nucleotides
MMP_RS06010: MMP_RS06010 - heavy metal translocating P-type ATPase, at 1,148,331 to 1,150,502
_RS06010
MMP_RS06015: MMP_RS06015 - flavodoxin family protein, at 1,150,667 to 1,151,260
_RS06015
MMP_RS06020: MMP_RS06020 - archaeoflavoprotein AfpA, at 1,151,263 to 1,151,817
_RS06020
MMP_RS06025: MMP_RS06025 - ABC transporter ATP-binding protein, at 1,151,818 to 1,152,564
_RS06025
MMP_RS06030: MMP_RS06030 - SufD family Fe-S cluster assembly protein, at 1,152,534 to 1,153,790
_RS06030
Position (kb)
1151
1152 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1150.350 kb on - strand at 1150.397 kb on - strand at 1150.448 kb on - strand at 1150.501 kb on + strand at 1150.503 kb on - strand at 1150.506 kb on + strand at 1150.510 kb on - strand at 1150.511 kb on + strand at 1150.514 kb on + strand at 1150.514 kb on + strand at 1150.514 kb on + strand at 1150.517 kb on - strand at 1150.521 kb on - strand at 1150.522 kb on + strand at 1150.580 kb on - strand at 1150.595 kb on - strand at 1150.596 kb on + strand at 1150.623 kb on - strand at 1150.626 kb on + strand at 1150.728 kb on + strand, within MMP_RS06015 at 1150.769 kb on - strand, within MMP_RS06015 at 1150.771 kb on - strand, within MMP_RS06015 at 1150.806 kb on - strand, within MMP_RS06015 at 1150.818 kb on + strand, within MMP_RS06015 at 1150.922 kb on + strand, within MMP_RS06015 at 1150.975 kb on + strand, within MMP_RS06015 at 1150.989 kb on - strand, within MMP_RS06015 at 1151.085 kb on + strand, within MMP_RS06015 at 1151.315 kb on - strand at 1151.323 kb on + strand, within MMP_RS06020 at 1151.400 kb on - strand, within MMP_RS06020 at 1151.626 kb on - strand, within MMP_RS06020 at 1151.626 kb on - strand, within MMP_RS06020 at 1151.627 kb on + strand, within MMP_RS06020 at 1151.696 kb on - strand, within MMP_RS06020 at 1151.696 kb on - strand, within MMP_RS06020 at 1151.696 kb on - strand, within MMP_RS06020 at 1151.697 kb on + strand, within MMP_RS06020 at 1151.699 kb on + strand, within MMP_RS06020 at 1151.755 kb on + strand, within MMP_RS06020 at 1151.789 kb on - strand at 1151.805 kb on - strand at 1152.016 kb on + strand at 1152.344 kb on - strand at 1152.409 kb on - strand at 1152.775 kb on - strand at 1152.776 kb on + strand at 1152.803 kb on + strand at 1152.803 kb on + strand at 1152.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 1,150,350 - -0.3 1,150,397 - +0.7 1,150,448 - +0.3 1,150,501 + +0.3 1,150,503 - +0.3 1,150,506 + +0.8 1,150,510 - +0.3 1,150,511 + +0.2 1,150,514 + +0.2 1,150,514 + +0.0 1,150,514 + +0.8 1,150,517 - +0.3 1,150,521 - +0.5 1,150,522 + +0.0 1,150,580 - +0.6 1,150,595 - +0.5 1,150,596 + +0.3 1,150,623 - +0.5 1,150,626 + +0.9 1,150,728 + MMP_RS06015 0.10 +0.6 1,150,769 - MMP_RS06015 0.17 -1.8 1,150,771 - MMP_RS06015 0.18 -2.1 1,150,806 - MMP_RS06015 0.23 -0.6 1,150,818 + MMP_RS06015 0.25 +0.7 1,150,922 + MMP_RS06015 0.43 +1.1 1,150,975 + MMP_RS06015 0.52 +1.1 1,150,989 - MMP_RS06015 0.54 -2.0 1,151,085 + MMP_RS06015 0.70 +0.2 1,151,315 - -5.8 1,151,323 + MMP_RS06020 0.11 -5.1 1,151,400 - MMP_RS06020 0.25 -4.8 1,151,626 - MMP_RS06020 0.65 -5.2 1,151,626 - MMP_RS06020 0.65 -4.3 1,151,627 + MMP_RS06020 0.66 -4.6 1,151,696 - MMP_RS06020 0.78 -4.1 1,151,696 - MMP_RS06020 0.78 -4.9 1,151,696 - MMP_RS06020 0.78 -4.4 1,151,697 + MMP_RS06020 0.78 -5.4 1,151,699 + MMP_RS06020 0.79 -4.4 1,151,755 + MMP_RS06020 0.89 -4.3 1,151,789 - -4.3 1,151,805 - -5.2 1,152,016 + -3.2 1,152,344 - -3.8 1,152,409 - -3.4 1,152,775 - -2.6 1,152,776 + -3.6 1,152,803 + -5.1 1,152,803 + -4.3 1,152,806 - -3.1
Or see this region's nucleotide sequence