Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05515

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05505 and MMP_RS05510 overlap by 4 nucleotidesMMP_RS05510 and MMP_RS05515 are separated by 109 nucleotidesMMP_RS05515 and MMP_RS05520 are separated by 18 nucleotides MMP_RS05505: MMP_RS05505 - class IV adenylate cyclase, at 1,057,240 to 1,057,803 _RS05505 MMP_RS05510: MMP_RS05510 - Rrf2 family transcriptional regulator, at 1,057,800 to 1,058,234 _RS05510 MMP_RS05515: MMP_RS05515 - cyclic pyranopterin monophosphate synthase MoaC, at 1,058,344 to 1,058,805 _RS05515 MMP_RS05520: MMP_RS05520 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,058,824 to 1,060,308 _RS05520 Position (kb) 1058 1059Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1057.509 kb on + strand, within MMP_RS05505at 1057.590 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.596 kb on + strand, within MMP_RS05505at 1057.596 kb on + strand, within MMP_RS05505at 1057.675 kb on - strand, within MMP_RS05505at 1057.676 kb on + strand, within MMP_RS05505at 1057.689 kb on + strand, within MMP_RS05505at 1057.787 kb on + strandat 1058.125 kb on - strand, within MMP_RS05510at 1058.125 kb on - strand, within MMP_RS05510at 1058.126 kb on + strand, within MMP_RS05510at 1058.126 kb on + strand, within MMP_RS05510at 1058.129 kb on - strand, within MMP_RS05510at 1058.130 kb on + strand, within MMP_RS05510at 1058.193 kb on + strandat 1058.202 kb on + strandat 1058.264 kb on - strandat 1058.282 kb on - strandat 1058.286 kb on - strandat 1058.286 kb on - strandat 1058.310 kb on - strandat 1058.314 kb on - strandat 1058.314 kb on - strandat 1058.319 kb on - strandat 1058.349 kb on - strandat 1058.434 kb on + strand, within MMP_RS05515at 1058.482 kb on + strand, within MMP_RS05515at 1058.533 kb on + strand, within MMP_RS05515at 1058.619 kb on + strand, within MMP_RS05515at 1058.648 kb on + strand, within MMP_RS05515at 1058.648 kb on + strand, within MMP_RS05515at 1058.718 kb on + strand, within MMP_RS05515at 1058.973 kb on + strandat 1058.998 kb on - strandat 1059.177 kb on - strandat 1059.192 kb on + strandat 1059.236 kb on + strandat 1059.257 kb on - strandat 1059.424 kb on - strandat 1059.543 kb on + strandat 1059.697 kb on + strandat 1059.697 kb on + strandat 1059.741 kb on - strandat 1059.749 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
remove
1,057,509 + MMP_RS05505 0.48 -1.0
1,057,590 - MMP_RS05505 0.62 +0.5
1,057,595 - MMP_RS05505 0.63 -0.1
1,057,595 - MMP_RS05505 0.63 +0.0
1,057,595 - MMP_RS05505 0.63 +0.4
1,057,595 - MMP_RS05505 0.63 +0.6
1,057,596 + MMP_RS05505 0.63 -0.1
1,057,596 + MMP_RS05505 0.63 +0.6
1,057,675 - MMP_RS05505 0.77 +0.1
1,057,676 + MMP_RS05505 0.77 +0.4
1,057,689 + MMP_RS05505 0.80 +0.1
1,057,787 + -0.2
1,058,125 - MMP_RS05510 0.75 +0.5
1,058,125 - MMP_RS05510 0.75 +0.0
1,058,126 + MMP_RS05510 0.75 -0.1
1,058,126 + MMP_RS05510 0.75 +0.4
1,058,129 - MMP_RS05510 0.76 -0.0
1,058,130 + MMP_RS05510 0.76 -0.2
1,058,193 + +0.1
1,058,202 + -0.0
1,058,264 - -0.7
1,058,282 - -5.9
1,058,286 - -6.1
1,058,286 - -7.4
1,058,310 - -6.3
1,058,314 - -4.3
1,058,314 - -6.6
1,058,319 - -4.5
1,058,349 - -5.8
1,058,434 + MMP_RS05515 0.19 -7.7
1,058,482 + MMP_RS05515 0.30 -7.8
1,058,533 + MMP_RS05515 0.41 -8.1
1,058,619 + MMP_RS05515 0.60 -6.6
1,058,648 + MMP_RS05515 0.66 -6.4
1,058,648 + MMP_RS05515 0.66 -7.5
1,058,718 + MMP_RS05515 0.81 -6.0
1,058,973 + -4.4
1,058,998 - -4.2
1,059,177 - -5.2
1,059,192 + -3.7
1,059,236 + -3.8
1,059,257 - -3.7
1,059,424 - -2.4
1,059,543 + -3.9
1,059,697 + -4.2
1,059,697 + -4.0
1,059,741 - -3.9
1,059,749 - -3.3

Or see this region's nucleotide sequence