Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05345

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05340 and MMP_RS05345 are separated by 162 nucleotidesMMP_RS05345 and MMP_RS05350 are separated by 21 nucleotidesMMP_RS05350 and MMP_RS05355 are separated by 71 nucleotides MMP_RS05340: MMP_RS05340 - OB-fold nucleic acid binding domain-containing protein, at 1,023,461 to 1,025,389 _RS05340 MMP_RS05345: MMP_RS05345 - hypothetical protein, at 1,025,552 to 1,028,482 _RS05345 MMP_RS05350: MMP_RS05350 - dTMP kinase, at 1,028,504 to 1,029,103 _RS05350 MMP_RS05355: MMP_RS05355 - hypothetical protein, at 1,029,175 to 1,029,588 _RS05355 Position (kb) 1025 1026 1027 1028 1029Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1024.661 kb on - strandat 1024.725 kb on + strandat 1024.727 kb on + strandat 1024.727 kb on + strandat 1024.735 kb on - strandat 1024.736 kb on + strandat 1024.736 kb on + strandat 1025.244 kb on + strandat 1025.419 kb on + strandat 1025.429 kb on + strandat 1025.441 kb on - strandat 1025.442 kb on + strandat 1025.442 kb on + strandat 1025.445 kb on - strandat 1025.452 kb on - strandat 1025.457 kb on - strandat 1025.457 kb on - strandat 1025.492 kb on + strandat 1025.493 kb on - strandat 1025.493 kb on - strandat 1025.493 kb on - strandat 1025.493 kb on - strandat 1025.493 kb on - strandat 1025.494 kb on + strandat 1025.494 kb on + strandat 1025.494 kb on + strandat 1025.494 kb on + strandat 1025.496 kb on - strandat 1025.497 kb on + strandat 1025.497 kb on + strandat 1025.518 kb on - strandat 1025.520 kb on - strandat 1025.521 kb on + strandat 1025.522 kb on - strandat 1025.523 kb on + strandat 1025.560 kb on - strandat 1025.572 kb on + strandat 1025.664 kb on + strandat 1025.668 kb on + strandat 1025.744 kb on + strandat 1025.883 kb on + strand, within MMP_RS05345at 1025.887 kb on - strand, within MMP_RS05345at 1025.888 kb on + strand, within MMP_RS05345at 1025.944 kb on - strand, within MMP_RS05345at 1025.945 kb on + strand, within MMP_RS05345at 1026.121 kb on + strand, within MMP_RS05345at 1026.122 kb on - strand, within MMP_RS05345at 1026.122 kb on - strand, within MMP_RS05345at 1026.150 kb on + strand, within MMP_RS05345at 1026.451 kb on + strand, within MMP_RS05345at 1026.686 kb on + strand, within MMP_RS05345at 1027.036 kb on + strand, within MMP_RS05345at 1027.275 kb on + strand, within MMP_RS05345at 1027.275 kb on + strand, within MMP_RS05345at 1027.341 kb on + strand, within MMP_RS05345at 1027.349 kb on - strand, within MMP_RS05345at 1027.360 kb on - strand, within MMP_RS05345at 1027.502 kb on + strand, within MMP_RS05345at 1027.680 kb on - strand, within MMP_RS05345at 1027.783 kb on - strand, within MMP_RS05345at 1027.810 kb on - strand, within MMP_RS05345at 1027.810 kb on - strand, within MMP_RS05345at 1027.883 kb on + strand, within MMP_RS05345at 1028.106 kb on - strand, within MMP_RS05345at 1028.106 kb on - strand, within MMP_RS05345at 1028.176 kb on + strand, within MMP_RS05345at 1028.330 kb on + strandat 1029.092 kb on + strandat 1029.096 kb on - strandat 1029.106 kb on - strandat 1029.107 kb on + strandat 1029.110 kb on - strandat 1029.110 kb on - strandat 1029.111 kb on + strandat 1029.111 kb on + strandat 1029.120 kb on + strandat 1029.127 kb on + strandat 1029.131 kb on - strandat 1029.143 kb on - strandat 1029.144 kb on + strandat 1029.144 kb on + strandat 1029.148 kb on + strandat 1029.148 kb on + strandat 1029.182 kb on - strandat 1029.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,024,661 - -5.0
1,024,725 + -3.7
1,024,727 + -2.6
1,024,727 + -3.1
1,024,735 - -3.6
1,024,736 + -2.6
1,024,736 + -2.7
1,025,244 + -3.6
1,025,419 + -4.2
1,025,429 + -4.0
1,025,441 - -4.8
1,025,442 + -3.2
1,025,442 + -3.9
1,025,445 - -4.0
1,025,452 - -1.1
1,025,457 - -1.9
1,025,457 - -0.7
1,025,492 + -3.4
1,025,493 - -5.5
1,025,493 - -3.3
1,025,493 - -3.2
1,025,493 - -6.1
1,025,493 - -5.9
1,025,494 + -1.2
1,025,494 + -1.0
1,025,494 + -3.5
1,025,494 + -0.8
1,025,496 - -4.4
1,025,497 + -5.7
1,025,497 + -4.2
1,025,518 - -4.9
1,025,520 - -3.9
1,025,521 + -4.6
1,025,522 - -4.6
1,025,523 + -4.9
1,025,560 - -3.4
1,025,572 + -3.4
1,025,664 + -4.4
1,025,668 + -2.8
1,025,744 + -2.8
1,025,883 + MMP_RS05345 0.11 -4.0
1,025,887 - MMP_RS05345 0.11 -4.2
1,025,888 + MMP_RS05345 0.11 -3.9
1,025,944 - MMP_RS05345 0.13 -3.5
1,025,945 + MMP_RS05345 0.13 -3.6
1,026,121 + MMP_RS05345 0.19 -4.4
1,026,122 - MMP_RS05345 0.19 -3.8
1,026,122 - MMP_RS05345 0.19 -2.8
1,026,150 + MMP_RS05345 0.20 -5.1
1,026,451 + MMP_RS05345 0.31 -3.9
1,026,686 + MMP_RS05345 0.39 -4.0
1,027,036 + MMP_RS05345 0.51 -3.0
1,027,275 + MMP_RS05345 0.59 -4.9
1,027,275 + MMP_RS05345 0.59 -3.6
1,027,341 + MMP_RS05345 0.61 -3.7
1,027,349 - MMP_RS05345 0.61 -2.1
1,027,360 - MMP_RS05345 0.62 -2.4
1,027,502 + MMP_RS05345 0.67 -3.4
1,027,680 - MMP_RS05345 0.73 -3.5
1,027,783 - MMP_RS05345 0.76 -4.5
1,027,810 - MMP_RS05345 0.77 -4.5
1,027,810 - MMP_RS05345 0.77 -4.3
1,027,883 + MMP_RS05345 0.80 -5.6
1,028,106 - MMP_RS05345 0.87 -3.3
1,028,106 - MMP_RS05345 0.87 -1.7
1,028,176 + MMP_RS05345 0.90 -4.8
1,028,330 + -5.9
1,029,092 + +0.4
1,029,096 - +0.4
1,029,106 - +0.7
1,029,107 + -0.5
1,029,110 - -0.5
1,029,110 - +0.5
1,029,111 + +0.1
1,029,111 + -0.0
1,029,120 + -0.6
1,029,127 + -0.0
1,029,131 - +0.7
1,029,143 - +0.7
1,029,144 + -0.1
1,029,144 + +0.2
1,029,148 + +0.5
1,029,148 + -0.5
1,029,182 - -0.4
1,029,183 + -0.2

Or see this region's nucleotide sequence