Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04605 and MMP_RS04610 are separated by 149 nucleotides MMP_RS04610 and MMP_RS04615 are separated by 121 nucleotides MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides MMP_RS04620 and MMP_RS04625 are separated by 197 nucleotides
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
MMP_RS04610: MMP_RS04610 - Dabb family protein, at 880,212 to 880,514
_RS04610
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
MMP_RS04625: MMP_RS04625 - DEAD/DEAH box helicase, at 881,791 to 884,034
_RS04625
Position (kb) 880
881 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand at 880.144 kb on - strand at 880.156 kb on - strand at 880.159 kb on - strand at 880.173 kb on - strand at 880.193 kb on + strand at 880.193 kb on + strand at 880.210 kb on + strand at 880.214 kb on + strand at 880.305 kb on - strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.460 kb on - strand, within MMP_RS04610 at 880.515 kb on + strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.519 kb on + strand at 880.519 kb on + strand at 880.562 kb on - strand at 880.568 kb on - strand at 880.568 kb on - strand at 880.569 kb on + strand at 880.569 kb on + strand at 880.572 kb on - strand at 880.576 kb on + strand at 880.576 kb on + strand at 880.704 kb on - strand, within MMP_RS04615 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.232 kb on + strand, within MMP_RS04620 at 881.319 kb on + strand, within MMP_RS04620 at 881.331 kb on + strand, within MMP_RS04620 at 881.337 kb on + strand, within MMP_RS04620 at 881.340 kb on + strand, within MMP_RS04620 at 881.366 kb on - strand, within MMP_RS04620 at 881.415 kb on + strand, within MMP_RS04620 at 881.446 kb on - strand, within MMP_RS04620 at 881.464 kb on - strand, within MMP_RS04620 at 881.522 kb on - strand, within MMP_RS04620 at 881.523 kb on + strand, within MMP_RS04620 at 881.572 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.631 kb on + strand at 881.634 kb on - strand at 881.635 kb on + strand at 881.646 kb on - strand at 881.646 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.663 kb on - strand at 881.668 kb on + strand at 881.675 kb on + strand at 881.684 kb on - strand at 881.684 kb on - strand at 881.688 kb on + strand at 881.690 kb on - strand at 881.691 kb on + strand at 881.691 kb on + strand at 881.694 kb on - strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.700 kb on - strand at 881.701 kb on + strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.708 kb on + strand at 881.736 kb on + strand at 881.740 kb on - strand at 881.740 kb on - strand at 881.743 kb on + strand at 881.758 kb on + strand at 881.799 kb on + strand at 881.835 kb on + strand at 881.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 879,656 + MMP_RS04605 0.47 -6.6 879,993 - -5.4 880,000 - -3.0 880,087 + -6.5 880,089 - -2.7 880,089 - -4.4 880,089 - -4.4 880,090 + -6.2 880,094 - -1.9 880,110 + -3.8 880,117 + -2.2 880,117 + -1.8 880,117 + -2.9 880,117 + -3.1 880,122 - -2.8 880,128 + -3.8 880,132 - -1.1 880,132 - -1.0 880,139 - -0.5 880,140 + -1.1 880,144 - -0.1 880,156 - -0.3 880,159 - -0.3 880,173 - +0.2 880,193 + +0.1 880,193 + -0.6 880,210 + +0.7 880,214 + +0.2 880,305 - MMP_RS04610 0.31 -0.2 880,306 + MMP_RS04610 0.31 +0.4 880,306 + MMP_RS04610 0.31 +0.2 880,460 - MMP_RS04610 0.82 +0.7 880,515 + -0.1 880,518 - +0.2 880,518 - +0.5 880,518 - -0.5 880,519 + -0.9 880,519 + +0.9 880,562 - +0.4 880,568 - -0.2 880,568 - -0.1 880,569 + +0.1 880,569 + +0.3 880,572 - -0.0 880,576 + +0.6 880,576 + +0.2 880,704 - MMP_RS04615 0.21 -4.4 880,889 + MMP_RS04615 0.77 -5.9 880,912 - -0.6 880,912 - MMP_RS04615 0.84 -6.0 880,913 + MMP_RS04615 0.85 -6.8 881,024 - MMP_RS04620 0.11 -5.4 881,223 - MMP_RS04620 0.42 -6.1 881,223 - MMP_RS04620 0.42 -2.9 881,223 - MMP_RS04620 0.42 -7.2 881,224 + MMP_RS04620 0.42 -2.5 881,224 + MMP_RS04620 0.42 -2.5 881,224 + MMP_RS04620 0.42 -3.5 881,224 + MMP_RS04620 0.42 -4.4 881,224 + MMP_RS04620 0.42 -2.4 881,224 + MMP_RS04620 0.42 -6.1 881,224 + MMP_RS04620 0.42 -6.2 881,224 + MMP_RS04620 0.42 -3.4 881,224 + MMP_RS04620 0.42 -3.6 881,232 + MMP_RS04620 0.43 -4.8 881,319 + MMP_RS04620 0.57 -2.9 881,331 + MMP_RS04620 0.59 -1.6 881,337 + MMP_RS04620 0.60 -3.0 881,340 + MMP_RS04620 0.60 -7.4 881,366 - MMP_RS04620 0.64 -5.5 881,415 + MMP_RS04620 0.72 -4.7 881,446 - MMP_RS04620 0.77 -2.6 881,464 - MMP_RS04620 0.80 -6.3 881,522 - MMP_RS04620 0.89 -3.9 881,523 + MMP_RS04620 0.89 -2.7 881,572 - -2.3 881,585 - -3.1 881,585 - -5.5 881,585 - -5.9 881,585 - -2.8 881,631 + -2.3 881,634 - -2.4 881,635 + -6.1 881,646 - -5.3 881,646 - -6.4 881,649 - -5.2 881,649 - -1.9 881,649 - -3.1 881,650 + -6.5 881,650 + -2.0 881,650 + -6.0 881,650 + -5.5 881,650 + -3.8 881,663 - -3.2 881,668 + -1.0 881,675 + -0.7 881,684 - -0.1 881,684 - -0.0 881,688 + +0.0 881,690 - +0.1 881,691 + +0.3 881,691 + -0.3 881,694 - -0.5 881,695 + +0.6 881,695 + -0.6 881,695 + +0.5 881,700 - +0.1 881,701 + +0.3 881,703 - +0.5 881,703 - +0.7 881,703 - -0.1 881,703 - +0.4 881,703 - -0.1 881,704 + -0.2 881,704 + -0.2 881,704 + -0.1 881,704 + -0.0 881,707 - +0.7 881,707 - -0.1 881,707 - +0.3 881,707 - -0.0 881,708 + +0.2 881,736 + +0.4 881,740 - +0.1 881,740 - -0.5 881,743 + +0.0 881,758 + +0.2 881,799 + -0.2 881,835 + -0.9 881,902 + -0.3
Or see this region's nucleotide sequence