Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04585

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04575 and MMP_RS04580 are separated by 124 nucleotidesMMP_RS04580 and MMP_RS04585 are separated by 174 nucleotidesMMP_RS04585 and MMP_RS04590 are separated by 27 nucleotides MMP_RS04575: MMP_RS04575 - homoisocitrate dehydrogenase, at 873,802 to 874,821 _RS04575 MMP_RS04580: MMP_RS04580 - hypothetical protein, at 874,946 to 875,287 _RS04580 MMP_RS04585: MMP_RS04585 - AIR synthase related protein, at 875,462 to 876,343 _RS04585 MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336 _RS04590 Position (kb) 875 876 877Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 874.506 kb on - strandat 874.507 kb on + strandat 874.509 kb on + strandat 874.509 kb on + strandat 874.509 kb on + strandat 874.569 kb on - strandat 874.742 kb on + strandat 874.846 kb on - strandat 874.846 kb on - strandat 874.847 kb on + strandat 874.847 kb on + strandat 874.872 kb on - strandat 874.872 kb on - strandat 874.873 kb on + strandat 874.877 kb on - strandat 874.877 kb on - strandat 874.877 kb on - strandat 874.877 kb on - strandat 874.877 kb on - strandat 874.878 kb on + strandat 874.878 kb on + strandat 874.890 kb on - strandat 874.899 kb on + strandat 874.908 kb on - strandat 874.909 kb on + strandat 874.909 kb on + strandat 874.909 kb on + strandat 874.909 kb on + strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.910 kb on - strandat 874.911 kb on + strandat 874.911 kb on + strandat 874.911 kb on + strandat 874.911 kb on + strandat 874.911 kb on + strandat 874.923 kb on - strandat 874.924 kb on + strandat 874.931 kb on - strandat 874.947 kb on - strandat 874.957 kb on + strandat 874.964 kb on - strandat 874.964 kb on - strandat 875.029 kb on - strand, within MMP_RS04580at 875.029 kb on - strand, within MMP_RS04580at 875.029 kb on - strand, within MMP_RS04580at 875.049 kb on - strand, within MMP_RS04580at 875.065 kb on - strand, within MMP_RS04580at 875.082 kb on + strand, within MMP_RS04580at 875.129 kb on + strand, within MMP_RS04580at 875.129 kb on + strand, within MMP_RS04580at 875.175 kb on - strand, within MMP_RS04580at 875.175 kb on - strand, within MMP_RS04580at 875.175 kb on - strand, within MMP_RS04580at 875.175 kb on - strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.176 kb on + strand, within MMP_RS04580at 875.179 kb on - strand, within MMP_RS04580at 875.180 kb on + strand, within MMP_RS04580at 875.180 kb on + strand, within MMP_RS04580at 875.252 kb on - strand, within MMP_RS04580at 875.289 kb on + strandat 875.304 kb on - strandat 875.305 kb on + strandat 875.322 kb on + strandat 875.339 kb on - strandat 875.340 kb on + strandat 875.348 kb on - strandat 875.352 kb on - strandat 875.353 kb on + strandat 875.353 kb on + strandat 875.354 kb on - strandat 875.355 kb on + strandat 875.382 kb on - strandat 875.383 kb on + strandat 875.388 kb on - strandat 875.388 kb on - strandat 875.389 kb on + strandat 875.391 kb on + strandat 875.391 kb on + strandat 875.394 kb on - strandat 875.395 kb on + strandat 875.411 kb on + strandat 875.425 kb on - strandat 875.426 kb on + strandat 875.426 kb on + strandat 875.428 kb on + strandat 875.444 kb on + strandat 875.489 kb on - strandat 875.490 kb on + strandat 875.503 kb on - strandat 875.503 kb on - strandat 875.516 kb on + strandat 875.598 kb on - strand, within MMP_RS04585at 875.621 kb on + strand, within MMP_RS04585at 875.668 kb on - strand, within MMP_RS04585at 875.678 kb on + strand, within MMP_RS04585at 875.678 kb on + strand, within MMP_RS04585at 875.766 kb on - strand, within MMP_RS04585at 875.767 kb on + strand, within MMP_RS04585at 875.767 kb on + strand, within MMP_RS04585at 875.797 kb on - strand, within MMP_RS04585at 875.797 kb on - strand, within MMP_RS04585at 875.798 kb on + strand, within MMP_RS04585at 875.809 kb on + strand, within MMP_RS04585at 875.811 kb on - strand, within MMP_RS04585at 875.892 kb on - strand, within MMP_RS04585at 875.893 kb on + strand, within MMP_RS04585at 875.925 kb on - strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.926 kb on + strand, within MMP_RS04585at 875.949 kb on - strand, within MMP_RS04585at 875.959 kb on - strand, within MMP_RS04585at 876.007 kb on + strand, within MMP_RS04585at 876.007 kb on + strand, within MMP_RS04585at 876.166 kb on + strand, within MMP_RS04585at 876.166 kb on + strand, within MMP_RS04585at 876.196 kb on - strand, within MMP_RS04585at 876.196 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.220 kb on - strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.221 kb on + strand, within MMP_RS04585at 876.250 kb on + strand, within MMP_RS04585at 876.267 kb on - strandat 876.289 kb on - strandat 876.289 kb on - strandat 876.295 kb on - strandat 876.315 kb on - strandat 876.316 kb on + strandat 876.316 kb on + strandat 876.335 kb on + strandat 876.366 kb on + strandat 876.407 kb on + strandat 876.501 kb on - strand, within MMP_RS04590at 876.501 kb on - strand, within MMP_RS04590at 876.502 kb on + strand, within MMP_RS04590at 876.506 kb on - strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.516 kb on - strand, within MMP_RS04590at 876.527 kb on - strand, within MMP_RS04590at 876.528 kb on + strand, within MMP_RS04590at 876.542 kb on + strand, within MMP_RS04590at 876.546 kb on + strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.607 kb on - strand, within MMP_RS04590at 876.608 kb on + strand, within MMP_RS04590at 876.632 kb on + strand, within MMP_RS04590at 876.659 kb on - strand, within MMP_RS04590at 876.687 kb on + strand, within MMP_RS04590at 876.691 kb on - strand, within MMP_RS04590at 876.955 kb on + strand, within MMP_RS04590at 876.998 kb on - strand, within MMP_RS04590at 877.043 kb on - strand, within MMP_RS04590at 877.120 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.138 kb on - strand, within MMP_RS04590at 877.170 kb on - strand, within MMP_RS04590at 877.174 kb on - strand, within MMP_RS04590at 877.209 kb on + strand, within MMP_RS04590at 877.233 kb on + strand, within MMP_RS04590at 877.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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874,506 - -5.8
874,507 + -5.2
874,509 + -5.1
874,509 + -4.5
874,509 + -6.0
874,569 - -5.2
874,742 + -4.2
874,846 - -4.2
874,846 - -5.8
874,847 + -5.4
874,847 + -5.2
874,872 - -2.9
874,872 - -3.0
874,873 + -4.3
874,877 - -2.1
874,877 - -5.6
874,877 - -5.9
874,877 - -4.4
874,877 - -4.7
874,878 + -5.1
874,878 + -5.5
874,890 - -2.3
874,899 + +0.6
874,908 - -0.1
874,909 + +0.2
874,909 + +0.0
874,909 + -0.0
874,909 + +0.1
874,910 - +0.2
874,910 - +0.1
874,910 - +0.2
874,910 - +0.3
874,910 - -0.6
874,910 - +0.1
874,910 - -0.4
874,910 - -0.0
874,910 - +0.5
874,911 + +0.5
874,911 + -0.2
874,911 + -0.3
874,911 + +0.1
874,911 + +0.4
874,923 - +0.0
874,924 + -0.1
874,931 - -0.3
874,947 - +0.6
874,957 + +0.0
874,964 - -0.1
874,964 - -0.2
875,029 - MMP_RS04580 0.24 +0.3
875,029 - MMP_RS04580 0.24 -0.3
875,029 - MMP_RS04580 0.24 +0.1
875,049 - MMP_RS04580 0.30 +1.5
875,065 - MMP_RS04580 0.35 +0.3
875,082 + MMP_RS04580 0.40 -0.6
875,129 + MMP_RS04580 0.54 -0.2
875,129 + MMP_RS04580 0.54 +0.7
875,175 - MMP_RS04580 0.67 +0.8
875,175 - MMP_RS04580 0.67 -0.0
875,175 - MMP_RS04580 0.67 +0.6
875,175 - MMP_RS04580 0.67 +0.1
875,176 + MMP_RS04580 0.67 +0.6
875,176 + MMP_RS04580 0.67 -0.8
875,176 + MMP_RS04580 0.67 -0.1
875,176 + MMP_RS04580 0.67 +0.1
875,176 + MMP_RS04580 0.67 -0.5
875,176 + MMP_RS04580 0.67 +0.6
875,179 - MMP_RS04580 0.68 +0.2
875,180 + MMP_RS04580 0.68 +0.5
875,180 + MMP_RS04580 0.68 -0.1
875,252 - MMP_RS04580 0.89 +0.1
875,289 + +0.5
875,304 - -0.2
875,305 + -0.6
875,322 + +0.3
875,339 - -0.0
875,340 + +0.1
875,348 - +0.8
875,352 - +0.2
875,353 + +0.5
875,353 + +0.2
875,354 - -1.0
875,355 + -0.3
875,382 - -0.2
875,383 + -0.1
875,388 - -2.2
875,388 - -1.4
875,389 + +0.7
875,391 + +0.1
875,391 + +0.2
875,394 - -1.1
875,395 + +0.2
875,411 + -0.1
875,425 - -3.0
875,426 + +0.0
875,426 + -0.5
875,428 + -1.7
875,444 + -2.1
875,489 - -7.3
875,490 + -4.3
875,503 - -3.8
875,503 - -5.4
875,516 + -6.3
875,598 - MMP_RS04585 0.15 -4.8
875,621 + MMP_RS04585 0.18 -4.3
875,668 - MMP_RS04585 0.23 -2.0
875,678 + MMP_RS04585 0.24 -7.0
875,678 + MMP_RS04585 0.24 -4.7
875,766 - MMP_RS04585 0.34 -6.7
875,767 + MMP_RS04585 0.35 -5.3
875,767 + MMP_RS04585 0.35 -4.7
875,797 - MMP_RS04585 0.38 -5.1
875,797 - MMP_RS04585 0.38 -6.3
875,798 + MMP_RS04585 0.38 -5.3
875,809 + MMP_RS04585 0.39 -2.7
875,811 - MMP_RS04585 0.40 -6.0
875,892 - MMP_RS04585 0.49 -4.6
875,893 + MMP_RS04585 0.49 -5.5
875,925 - MMP_RS04585 0.52 -5.7
875,926 + MMP_RS04585 0.53 -4.3
875,926 + MMP_RS04585 0.53 -5.6
875,926 + MMP_RS04585 0.53 -1.0
875,926 + MMP_RS04585 0.53 -4.0
875,949 - MMP_RS04585 0.55 -5.1
875,959 - MMP_RS04585 0.56 -5.6
876,007 + MMP_RS04585 0.62 -5.7
876,007 + MMP_RS04585 0.62 -4.9
876,166 + MMP_RS04585 0.80 -6.8
876,166 + MMP_RS04585 0.80 -4.9
876,196 - MMP_RS04585 0.83 -5.0
876,196 - MMP_RS04585 0.83 -4.9
876,220 - MMP_RS04585 0.86 -5.6
876,220 - MMP_RS04585 0.86 -7.6
876,220 - MMP_RS04585 0.86 -5.1
876,221 + MMP_RS04585 0.86 -6.2
876,221 + MMP_RS04585 0.86 -6.2
876,221 + MMP_RS04585 0.86 -5.8
876,221 + MMP_RS04585 0.86 -5.2
876,221 + MMP_RS04585 0.86 -7.1
876,250 + MMP_RS04585 0.89 -2.2
876,267 - -6.4
876,289 - -4.8
876,289 - -5.7
876,295 - -3.9
876,315 - -0.0
876,316 + -0.5
876,316 + -0.2
876,335 + +0.4
876,366 + -0.0
876,407 + +0.5
876,501 - MMP_RS04590 0.13 +0.3
876,501 - MMP_RS04590 0.13 +0.1
876,502 + MMP_RS04590 0.14 -0.1
876,506 - MMP_RS04590 0.14 -0.0
876,507 + MMP_RS04590 0.14 +0.3
876,507 + MMP_RS04590 0.14 +0.7
876,516 - MMP_RS04590 0.15 -0.9
876,527 - MMP_RS04590 0.16 -0.4
876,528 + MMP_RS04590 0.16 +0.0
876,542 + MMP_RS04590 0.18 +0.0
876,546 + MMP_RS04590 0.18 -0.5
876,560 - MMP_RS04590 0.20 +0.2
876,560 - MMP_RS04590 0.20 +0.4
876,607 - MMP_RS04590 0.24 -0.4
876,608 + MMP_RS04590 0.25 +0.2
876,632 + MMP_RS04590 0.27 +0.8
876,659 - MMP_RS04590 0.30 -0.5
876,687 + MMP_RS04590 0.33 +0.0
876,691 - MMP_RS04590 0.33 +0.2
876,955 + MMP_RS04590 0.60 -0.4
876,998 - MMP_RS04590 0.65 -0.3
877,043 - MMP_RS04590 0.70 +0.5
877,120 + MMP_RS04590 0.78 +0.6
877,133 + MMP_RS04590 0.79 +0.3
877,133 + MMP_RS04590 0.79 +0.8
877,133 + MMP_RS04590 0.79 -0.4
877,138 - MMP_RS04590 0.79 -0.5
877,170 - MMP_RS04590 0.83 +0.3
877,174 - MMP_RS04590 0.83 +0.0
877,209 + MMP_RS04590 0.87 +0.7
877,233 + MMP_RS04590 0.89 -0.1
877,272 + +0.2

Or see this region's nucleotide sequence