Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03700

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03695 and MMP_RS03700 are separated by 12 nucleotidesMMP_RS03700 and MMP_RS03705 are separated by 204 nucleotides MMP_RS03695: MMP_RS03695 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 696,475 to 697,758 _RS03695 MMP_RS03700: MMP_RS03700 - sodium:proton antiporter, at 697,771 to 699,024 _RS03700 MMP_RS03705: MMP_RS03705 - (5-formylfuran-3-yl)methyl phosphate synthase, at 699,229 to 699,939 _RS03705 Position (kb) 697 698 699 700Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 696.787 kb on + strandat 696.857 kb on + strandat 696.884 kb on - strandat 696.973 kb on - strandat 696.974 kb on + strandat 697.175 kb on + strandat 697.317 kb on + strandat 697.372 kb on + strandat 697.382 kb on + strandat 697.402 kb on - strandat 697.556 kb on + strandat 697.614 kb on - strandat 697.889 kb on - strandat 697.932 kb on - strand, within MMP_RS03700at 697.940 kb on - strand, within MMP_RS03700at 697.941 kb on + strand, within MMP_RS03700at 698.235 kb on - strand, within MMP_RS03700at 698.256 kb on + strand, within MMP_RS03700at 698.256 kb on + strand, within MMP_RS03700at 698.257 kb on - strand, within MMP_RS03700at 698.363 kb on + strand, within MMP_RS03700at 698.363 kb on + strand, within MMP_RS03700at 698.551 kb on - strand, within MMP_RS03700at 698.616 kb on - strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.654 kb on - strand, within MMP_RS03700at 698.658 kb on - strand, within MMP_RS03700at 698.676 kb on - strand, within MMP_RS03700at 698.676 kb on - strand, within MMP_RS03700at 698.677 kb on + strand, within MMP_RS03700at 698.690 kb on - strand, within MMP_RS03700at 698.690 kb on - strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.692 kb on - strand, within MMP_RS03700at 698.693 kb on + strand, within MMP_RS03700at 698.693 kb on + strand, within MMP_RS03700at 698.694 kb on - strand, within MMP_RS03700at 698.768 kb on + strand, within MMP_RS03700at 698.903 kb on + strandat 698.913 kb on - strandat 698.945 kb on + strandat 698.945 kb on + strandat 698.965 kb on - strandat 698.999 kb on - strandat 699.038 kb on + strandat 699.041 kb on - strandat 699.047 kb on + strandat 699.048 kb on - strandat 699.048 kb on - strandat 699.049 kb on + strandat 699.075 kb on - strandat 699.106 kb on - strandat 699.106 kb on - strandat 699.113 kb on - strandat 699.134 kb on + strandat 699.171 kb on - strandat 699.176 kb on + strandat 699.176 kb on + strandat 699.182 kb on + strandat 699.186 kb on + strandat 699.186 kb on + strandat 699.197 kb on - strandat 699.298 kb on + strandat 699.350 kb on - strandat 699.462 kb on + strandat 699.462 kb on + strandat 699.795 kb on - strandat 699.819 kb on + strandat 699.827 kb on - strandat 699.827 kb on - strandat 699.827 kb on - strandat 699.864 kb on - strandat 699.955 kb on + strandat 699.968 kb on + strandat 699.977 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
remove
696,787 + -3.6
696,857 + -2.2
696,884 - -3.7
696,973 - -1.9
696,974 + -3.7
697,175 + -3.5
697,317 + -4.5
697,372 + -2.3
697,382 + -3.9
697,402 - -4.1
697,556 + -3.2
697,614 - -4.7
697,889 - -4.6
697,932 - MMP_RS03700 0.13 -3.6
697,940 - MMP_RS03700 0.13 -3.4
697,941 + MMP_RS03700 0.14 -3.1
698,235 - MMP_RS03700 0.37 -4.8
698,256 + MMP_RS03700 0.39 -5.1
698,256 + MMP_RS03700 0.39 -3.1
698,257 - MMP_RS03700 0.39 -3.7
698,363 + MMP_RS03700 0.47 -4.4
698,363 + MMP_RS03700 0.47 -4.5
698,551 - MMP_RS03700 0.62 -4.8
698,616 - MMP_RS03700 0.67 -4.2
698,617 + MMP_RS03700 0.67 -5.4
698,617 + MMP_RS03700 0.67 -4.3
698,617 + MMP_RS03700 0.67 -4.4
698,654 - MMP_RS03700 0.70 -4.4
698,658 - MMP_RS03700 0.71 -6.0
698,676 - MMP_RS03700 0.72 -5.5
698,676 - MMP_RS03700 0.72 -5.6
698,677 + MMP_RS03700 0.72 -5.2
698,690 - MMP_RS03700 0.73 -2.9
698,690 - MMP_RS03700 0.73 -5.3
698,691 + MMP_RS03700 0.73 -5.2
698,691 + MMP_RS03700 0.73 -6.2
698,691 + MMP_RS03700 0.73 -4.3
698,691 + MMP_RS03700 0.73 -4.8
698,692 - MMP_RS03700 0.73 -4.7
698,693 + MMP_RS03700 0.74 -4.4
698,693 + MMP_RS03700 0.74 -4.3
698,694 - MMP_RS03700 0.74 -3.8
698,768 + MMP_RS03700 0.80 -5.0
698,903 + -5.9
698,913 - -6.1
698,945 + -5.3
698,945 + -4.0
698,965 - -4.8
698,999 - -2.5
699,038 + -5.5
699,041 - -4.2
699,047 + -4.9
699,048 - -4.3
699,048 - -6.2
699,049 + -5.5
699,075 - -2.1
699,106 - -3.4
699,106 - -4.1
699,113 - -6.9
699,134 + -4.7
699,171 - -4.4
699,176 + -3.5
699,176 + -4.1
699,182 + -6.6
699,186 + -5.0
699,186 + -5.6
699,197 - -4.7
699,298 + -3.5
699,350 - -4.6
699,462 + -5.3
699,462 + -4.4
699,795 - -2.9
699,819 + -5.0
699,827 - -4.3
699,827 - -5.0
699,827 - -4.3
699,864 - -5.2
699,955 + +0.3
699,968 + +0.4
699,977 + -0.1

Or see this region's nucleotide sequence