Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03470 and MMP_RS03475 overlap by 4 nucleotides MMP_RS03475 and MMP_RS03480 are separated by 49 nucleotides
MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060
_RS03470
MMP_RS03475: MMP_RS03475 - hypothetical protein, at 652,057 to 652,287
_RS03475
MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956
_RS03480
Position (kb) 652
653 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 651.102 kb on - strand at 651.139 kb on + strand at 651.147 kb on + strand at 651.163 kb on - strand at 651.170 kb on - strand at 651.511 kb on - strand, within MMP_RS03470 at 651.559 kb on + strand, within MMP_RS03470 at 651.751 kb on - strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.780 kb on - strand, within MMP_RS03470 at 651.793 kb on - strand, within MMP_RS03470 at 651.793 kb on - strand, within MMP_RS03470 at 651.797 kb on - strand, within MMP_RS03470 at 651.804 kb on - strand, within MMP_RS03470 at 651.941 kb on + strand, within MMP_RS03470 at 652.137 kb on + strand, within MMP_RS03475 at 652.266 kb on - strand at 652.271 kb on - strand at 652.387 kb on + strand at 652.531 kb on - strand, within MMP_RS03480 at 652.531 kb on - strand, within MMP_RS03480 at 652.532 kb on + strand, within MMP_RS03480 at 652.578 kb on - strand, within MMP_RS03480 at 652.588 kb on - strand, within MMP_RS03480 at 652.922 kb on + strand, within MMP_RS03480 at 652.963 kb on + strand, within MMP_RS03480 at 653.107 kb on - strand, within MMP_RS03480 at 653.219 kb on + strand, within MMP_RS03480 at 653.219 kb on + strand, within MMP_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 651,102 - +0.4 651,139 + +0.6 651,147 + +0.1 651,163 - -0.3 651,170 - -0.4 651,511 - MMP_RS03470 0.37 -0.1 651,559 + MMP_RS03470 0.43 -0.0 651,751 - MMP_RS03470 0.65 +0.1 651,752 + MMP_RS03470 0.65 -0.8 651,752 + MMP_RS03470 0.65 +0.4 651,752 + MMP_RS03470 0.65 -0.3 651,752 + MMP_RS03470 0.65 +0.3 651,780 - MMP_RS03470 0.68 -0.4 651,793 - MMP_RS03470 0.69 -0.4 651,793 - MMP_RS03470 0.69 -0.7 651,797 - MMP_RS03470 0.70 -0.4 651,804 - MMP_RS03470 0.71 -1.0 651,941 + MMP_RS03470 0.86 +0.3 652,137 + MMP_RS03475 0.35 -5.0 652,266 - -3.1 652,271 - +0.6 652,387 + +0.0 652,531 - MMP_RS03480 0.12 +0.1 652,531 - MMP_RS03480 0.12 -0.2 652,532 + MMP_RS03480 0.12 +0.1 652,578 - MMP_RS03480 0.15 +0.8 652,588 - MMP_RS03480 0.15 +0.4 652,922 + MMP_RS03480 0.36 -0.2 652,963 + MMP_RS03480 0.39 +0.1 653,107 - MMP_RS03480 0.48 +0.6 653,219 + MMP_RS03480 0.54 +0.3 653,219 + MMP_RS03480 0.54 +0.5
Or see this region's nucleotide sequence