Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03405 and MMP_RS03410 are separated by 4 nucleotides MMP_RS03410 and MMP_RS03415 are separated by 161 nucleotides
MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675
_RS03405
MMP_RS03410: MMP_RS03410 - hypothetical protein, at 639,680 to 641,215
_RS03410
MMP_RS03415: MMP_RS03415 - acetolactate synthase large subunit, at 641,377 to 643,140
_RS03415
Position (kb) 639
640
641
642 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 638.751 kb on + strand at 638.951 kb on - strand, within MMP_RS03405 at 638.952 kb on + strand, within MMP_RS03405 at 639.010 kb on + strand, within MMP_RS03405 at 639.060 kb on - strand, within MMP_RS03405 at 639.075 kb on - strand, within MMP_RS03405 at 639.388 kb on + strand, within MMP_RS03405 at 639.402 kb on - strand, within MMP_RS03405 at 639.451 kb on - strand, within MMP_RS03405 at 639.470 kb on + strand, within MMP_RS03405 at 639.567 kb on - strand, within MMP_RS03405 at 639.969 kb on - strand, within MMP_RS03410 at 640.226 kb on + strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.267 kb on - strand, within MMP_RS03410 at 640.268 kb on + strand, within MMP_RS03410 at 640.289 kb on - strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.290 kb on + strand, within MMP_RS03410 at 640.321 kb on - strand, within MMP_RS03410 at 640.381 kb on + strand, within MMP_RS03410 at 640.659 kb on - strand, within MMP_RS03410 at 640.670 kb on + strand, within MMP_RS03410 at 640.673 kb on - strand, within MMP_RS03410 at 640.679 kb on + strand, within MMP_RS03410 at 640.793 kb on - strand, within MMP_RS03410 at 641.240 kb on + strand at 641.240 kb on + strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.242 kb on + strand at 641.255 kb on - strand at 641.256 kb on + strand at 641.284 kb on - strand at 641.297 kb on - strand at 641.298 kb on + strand at 641.301 kb on - strand at 641.302 kb on + strand at 641.302 kb on + strand at 641.304 kb on + strand at 641.322 kb on + strand at 641.363 kb on - strand at 642.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 638,751 + -0.8 638,951 - MMP_RS03405 0.29 +1.0 638,952 + MMP_RS03405 0.29 -0.7 639,010 + MMP_RS03405 0.35 -2.3 639,060 - MMP_RS03405 0.40 +0.1 639,075 - MMP_RS03405 0.41 +0.7 639,388 + MMP_RS03405 0.72 -0.4 639,402 - MMP_RS03405 0.73 -0.4 639,451 - MMP_RS03405 0.78 -0.5 639,470 + MMP_RS03405 0.80 -0.2 639,567 - MMP_RS03405 0.89 +0.3 639,969 - MMP_RS03410 0.19 -0.7 640,226 + MMP_RS03410 0.36 -1.5 640,267 - MMP_RS03410 0.38 -0.3 640,267 - MMP_RS03410 0.38 -1.0 640,268 + MMP_RS03410 0.38 -1.2 640,289 - MMP_RS03410 0.40 -1.0 640,290 + MMP_RS03410 0.40 -1.0 640,290 + MMP_RS03410 0.40 -0.8 640,321 - MMP_RS03410 0.42 -1.5 640,381 + MMP_RS03410 0.46 -1.8 640,659 - MMP_RS03410 0.64 -1.4 640,670 + MMP_RS03410 0.64 -2.2 640,673 - MMP_RS03410 0.65 -1.1 640,679 + MMP_RS03410 0.65 -0.4 640,793 - MMP_RS03410 0.72 -0.7 641,240 + -0.2 641,240 + -0.4 641,241 - +0.8 641,241 - -0.0 641,241 - +0.1 641,242 + -0.8 641,255 - +0.3 641,256 + +0.5 641,284 - +0.8 641,297 - -0.7 641,298 + -0.4 641,301 - -3.3 641,302 + -1.2 641,302 + -3.0 641,304 + -3.9 641,322 + -3.6 641,363 - -4.7 642,135 - -5.4
Or see this region's nucleotide sequence