Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03095

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03090 and MMP_RS03095 are separated by 116 nucleotidesMMP_RS03095 and MMP_RS03100 are separated by 5 nucleotidesMMP_RS03100 and MMP_RS03105 are separated by 261 nucleotides MMP_RS03090: MMP_RS03090 - cation:proton antiporter, at 583,278 to 584,447 _RS03090 MMP_RS03095: MMP_RS03095 - diphthine synthase, at 584,564 to 585,331 _RS03095 MMP_RS03100: MMP_RS03100 - hypothetical protein, at 585,337 to 585,537 _RS03100 MMP_RS03105: MMP_RS03105 - radical SAM protein, at 585,799 to 587,331 _RS03105 Position (kb) 584 585 586Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 583.775 kb on - strand, within MMP_RS03090at 583.786 kb on + strand, within MMP_RS03090at 583.786 kb on + strand, within MMP_RS03090at 583.792 kb on + strand, within MMP_RS03090at 583.843 kb on + strand, within MMP_RS03090at 583.845 kb on - strand, within MMP_RS03090at 583.849 kb on + strand, within MMP_RS03090at 583.889 kb on - strand, within MMP_RS03090at 584.135 kb on + strand, within MMP_RS03090at 584.468 kb on - strandat 584.468 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.514 kb on - strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.515 kb on + strandat 584.516 kb on - strandat 584.516 kb on - strandat 584.516 kb on - strandat 584.517 kb on + strandat 584.518 kb on - strandat 584.518 kb on - strandat 584.519 kb on + strandat 584.519 kb on + strandat 584.522 kb on + strandat 584.540 kb on + strandat 584.546 kb on - strandat 584.547 kb on + strandat 584.592 kb on + strandat 584.609 kb on + strandat 584.609 kb on + strandat 584.673 kb on - strand, within MMP_RS03095at 584.678 kb on + strand, within MMP_RS03095at 584.678 kb on + strand, within MMP_RS03095at 584.725 kb on + strand, within MMP_RS03095at 584.754 kb on + strand, within MMP_RS03095at 585.002 kb on - strand, within MMP_RS03095at 585.071 kb on + strand, within MMP_RS03095at 585.206 kb on - strand, within MMP_RS03095at 585.210 kb on + strand, within MMP_RS03095at 585.401 kb on + strand, within MMP_RS03100at 585.509 kb on + strand, within MMP_RS03100at 585.512 kb on - strand, within MMP_RS03100at 585.512 kb on - strand, within MMP_RS03100at 585.513 kb on + strand, within MMP_RS03100at 585.514 kb on - strand, within MMP_RS03100at 585.551 kb on - strandat 585.553 kb on - strandat 585.553 kb on - strandat 585.553 kb on - strandat 585.554 kb on + strandat 585.572 kb on - strandat 585.573 kb on + strandat 585.587 kb on - strandat 585.592 kb on + strandat 585.627 kb on + strandat 585.675 kb on + strandat 585.739 kb on - strandat 585.739 kb on - strandat 585.741 kb on - strandat 585.741 kb on - strandat 585.756 kb on - strandat 585.757 kb on + strandat 585.757 kb on + strandat 585.763 kb on - strandat 585.763 kb on - strandat 585.764 kb on + strandat 585.764 kb on + strandat 585.766 kb on + strandat 585.766 kb on + strandat 585.824 kb on + strandat 585.936 kb on - strandat 585.979 kb on - strand, within MMP_RS03105at 585.980 kb on + strand, within MMP_RS03105at 585.986 kb on - strand, within MMP_RS03105at 585.987 kb on + strand, within MMP_RS03105at 585.990 kb on - strand, within MMP_RS03105at 586.117 kb on + strand, within MMP_RS03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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583,775 - MMP_RS03090 0.42 -0.2
583,786 + MMP_RS03090 0.43 -0.1
583,786 + MMP_RS03090 0.43 -0.3
583,792 + MMP_RS03090 0.44 -0.3
583,843 + MMP_RS03090 0.48 +0.1
583,845 - MMP_RS03090 0.48 +0.2
583,849 + MMP_RS03090 0.49 -0.2
583,889 - MMP_RS03090 0.52 +0.0
584,135 + MMP_RS03090 0.73 +0.2
584,468 - +0.7
584,468 - +0.4
584,514 - +0.5
584,514 - +0.1
584,514 - -0.4
584,514 - +0.4
584,514 - +0.5
584,514 - -0.4
584,514 - +0.5
584,514 - +0.4
584,514 - +0.3
584,514 - +0.3
584,515 + -0.7
584,515 + +0.3
584,515 + +0.2
584,515 + -0.5
584,515 + +0.3
584,515 + -0.2
584,515 + +0.3
584,515 + +0.1
584,516 - -3.1
584,516 - -4.4
584,516 - -3.7
584,517 + -1.0
584,518 - -2.7
584,518 - -3.1
584,519 + -2.1
584,519 + -0.5
584,522 + -1.7
584,540 + -4.0
584,546 - -2.9
584,547 + -3.3
584,592 + -6.4
584,609 + -3.5
584,609 + -3.8
584,673 - MMP_RS03095 0.14 -4.7
584,678 + MMP_RS03095 0.15 -4.1
584,678 + MMP_RS03095 0.15 -5.8
584,725 + MMP_RS03095 0.21 -5.4
584,754 + MMP_RS03095 0.25 -4.3
585,002 - MMP_RS03095 0.57 -4.5
585,071 + MMP_RS03095 0.66 -2.8
585,206 - MMP_RS03095 0.84 -6.8
585,210 + MMP_RS03095 0.84 -3.7
585,401 + MMP_RS03100 0.32 +0.5
585,509 + MMP_RS03100 0.86 -0.1
585,512 - MMP_RS03100 0.87 -1.7
585,512 - MMP_RS03100 0.87 +0.4
585,513 + MMP_RS03100 0.88 +0.6
585,514 - MMP_RS03100 0.88 -0.6
585,551 - +0.9
585,553 - +0.2
585,553 - +0.1
585,553 - +0.4
585,554 + -0.1
585,572 - +0.7
585,573 + -0.1
585,587 - +0.3
585,592 + -0.3
585,627 + +0.1
585,675 + -0.1
585,739 - +0.5
585,739 - -0.2
585,741 - +0.0
585,741 - -0.8
585,756 - -0.2
585,757 + -0.0
585,757 + +0.8
585,763 - -0.1
585,763 - +0.2
585,764 + -1.0
585,764 + -0.1
585,766 + -0.2
585,766 + -0.4
585,824 + +0.3
585,936 - -0.2
585,979 - MMP_RS03105 0.12 -0.2
585,980 + MMP_RS03105 0.12 +0.1
585,986 - MMP_RS03105 0.12 -0.0
585,987 + MMP_RS03105 0.12 -0.5
585,990 - MMP_RS03105 0.12 -0.3
586,117 + MMP_RS03105 0.21 -0.5

Or see this region's nucleotide sequence