Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03015

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03005 and MMP_RS03010 are separated by 73 nucleotidesMMP_RS03010 and MMP_RS03015 are separated by 8 nucleotidesMMP_RS03015 and MMP_RS03020 are separated by 131 nucleotidesMMP_RS03020 and MMP_RS03025 are separated by 110 nucleotides MMP_RS03005: MMP_RS03005 - S-layer protein, at 568,527 to 570,113 _RS03005 MMP_RS03010: MMP_RS03010 - cupin domain-containing protein, at 570,187 to 570,687 _RS03010 MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589 _RS03015 MMP_RS03020: MMP_RS03020 - peptidylprolyl isomerase, at 571,721 to 572,407 _RS03020 MMP_RS03025: MMP_RS03025 - molybdenum cofactor guanylyltransferase, at 572,518 to 573,162 _RS03025 Position (kb) 570 571 572Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 569.731 kb on - strand, within MMP_RS03005at 569.731 kb on - strand, within MMP_RS03005at 570.001 kb on + strandat 570.060 kb on - strandat 570.061 kb on + strandat 570.064 kb on + strandat 570.064 kb on + strandat 570.068 kb on - strandat 570.078 kb on - strandat 570.079 kb on + strandat 570.083 kb on - strandat 570.083 kb on - strandat 570.113 kb on - strandat 570.135 kb on - strandat 570.139 kb on + strandat 570.139 kb on + strandat 570.142 kb on + strandat 570.164 kb on - strandat 570.361 kb on + strand, within MMP_RS03010at 570.410 kb on + strand, within MMP_RS03010at 570.414 kb on - strand, within MMP_RS03010at 570.415 kb on + strand, within MMP_RS03010at 570.416 kb on - strand, within MMP_RS03010at 570.436 kb on + strand, within MMP_RS03010at 570.439 kb on + strand, within MMP_RS03010at 570.445 kb on + strand, within MMP_RS03010at 570.448 kb on - strand, within MMP_RS03010at 570.449 kb on + strand, within MMP_RS03010at 570.449 kb on + strand, within MMP_RS03010at 570.468 kb on + strand, within MMP_RS03010at 570.524 kb on + strand, within MMP_RS03010at 570.534 kb on + strand, within MMP_RS03010at 570.544 kb on + strand, within MMP_RS03010at 570.548 kb on - strand, within MMP_RS03010at 570.567 kb on + strand, within MMP_RS03010at 570.567 kb on + strand, within MMP_RS03010at 570.577 kb on - strand, within MMP_RS03010at 570.820 kb on + strand, within MMP_RS03015at 570.836 kb on - strand, within MMP_RS03015at 570.915 kb on + strand, within MMP_RS03015at 570.950 kb on - strand, within MMP_RS03015at 570.951 kb on + strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.954 kb on - strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 570.955 kb on + strand, within MMP_RS03015at 571.002 kb on - strand, within MMP_RS03015at 571.003 kb on + strand, within MMP_RS03015at 571.239 kb on + strand, within MMP_RS03015at 571.302 kb on - strand, within MMP_RS03015at 571.354 kb on - strand, within MMP_RS03015at 571.668 kb on + strandat 571.709 kb on - strandat 571.723 kb on + strandat 571.863 kb on + strand, within MMP_RS03020at 571.863 kb on + strand, within MMP_RS03020at 571.863 kb on + strand, within MMP_RS03020at 571.868 kb on - strand, within MMP_RS03020at 571.941 kb on + strand, within MMP_RS03020at 571.964 kb on - strand, within MMP_RS03020at 572.054 kb on - strand, within MMP_RS03020at 572.430 kb on - strandat 572.461 kb on - strandat 572.461 kb on - strandat 572.479 kb on - strandat 572.479 kb on - strandat 572.499 kb on + strandat 572.518 kb on + strandat 572.532 kb on - strandat 572.533 kb on + strandat 572.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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569,731 - MMP_RS03005 0.76 -0.0
569,731 - MMP_RS03005 0.76 +0.0
570,001 + -0.1
570,060 - -0.6
570,061 + -0.0
570,064 + +0.6
570,064 + +0.1
570,068 - +0.2
570,078 - +0.3
570,079 + +0.1
570,083 - -0.0
570,083 - +0.1
570,113 - +0.4
570,135 - -0.7
570,139 + +0.4
570,139 + +0.3
570,142 + +0.5
570,164 - -0.0
570,361 + MMP_RS03010 0.35 +0.3
570,410 + MMP_RS03010 0.45 -0.1
570,414 - MMP_RS03010 0.45 -0.3
570,415 + MMP_RS03010 0.46 +0.0
570,416 - MMP_RS03010 0.46 +0.1
570,436 + MMP_RS03010 0.50 -0.5
570,439 + MMP_RS03010 0.50 -0.6
570,445 + MMP_RS03010 0.51 +0.2
570,448 - MMP_RS03010 0.52 -0.5
570,449 + MMP_RS03010 0.52 +0.1
570,449 + MMP_RS03010 0.52 +0.6
570,468 + MMP_RS03010 0.56 +0.2
570,524 + MMP_RS03010 0.67 +0.9
570,534 + MMP_RS03010 0.69 +0.8
570,544 + MMP_RS03010 0.71 +0.1
570,548 - MMP_RS03010 0.72 +0.7
570,567 + MMP_RS03010 0.76 -0.1
570,567 + MMP_RS03010 0.76 +0.2
570,577 - MMP_RS03010 0.78 -0.2
570,820 + MMP_RS03015 0.14 -6.9
570,836 - MMP_RS03015 0.16 -6.2
570,915 + MMP_RS03015 0.24 -6.7
570,950 - MMP_RS03015 0.28 -7.0
570,951 + MMP_RS03015 0.29 -6.4
570,954 - MMP_RS03015 0.29 -5.2
570,954 - MMP_RS03015 0.29 -5.3
570,954 - MMP_RS03015 0.29 -6.9
570,955 + MMP_RS03015 0.29 -5.5
570,955 + MMP_RS03015 0.29 -6.7
570,955 + MMP_RS03015 0.29 -7.3
571,002 - MMP_RS03015 0.34 -5.3
571,003 + MMP_RS03015 0.34 -7.0
571,239 + MMP_RS03015 0.61 -7.6
571,302 - MMP_RS03015 0.68 -5.8
571,354 - MMP_RS03015 0.74 -7.0
571,668 + -0.5
571,709 - +0.5
571,723 + +0.0
571,863 + MMP_RS03020 0.21 -1.5
571,863 + MMP_RS03020 0.21 -1.2
571,863 + MMP_RS03020 0.21 -1.0
571,868 - MMP_RS03020 0.21 -1.7
571,941 + MMP_RS03020 0.32 -0.9
571,964 - MMP_RS03020 0.35 -0.7
572,054 - MMP_RS03020 0.48 -0.9
572,430 - -1.1
572,461 - -1.3
572,461 - -1.1
572,479 - -5.7
572,479 - -5.6
572,499 + -6.7
572,518 + -5.5
572,532 - -5.2
572,533 + -6.0
572,538 + -5.2

Or see this region's nucleotide sequence