Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02345

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02330 and MMP_RS02335 are separated by 155 nucleotidesMMP_RS02335 and MMP_RS02340 are separated by 47 nucleotidesMMP_RS02340 and MMP_RS02345 are separated by 31 nucleotidesMMP_RS02345 and MMP_RS02350 are separated by 6 nucleotidesMMP_RS02350 and MMP_RS02355 are separated by 1 nucleotidesMMP_RS02355 and MMP_RS02360 are separated by 97 nucleotides MMP_RS02330: MMP_RS02330 - dihydroorotate dehydrogenase, at 438,564 to 439,478 _RS02330 MMP_RS02335: MMP_RS02335 - DNA-directed RNA polymerase, at 439,634 to 440,197 _RS02335 MMP_RS02340: MMP_RS02340 - DNA-directed RNA polymerase subunit E'', at 440,245 to 440,421 _RS02340 MMP_RS02345: MMP_RS02345 - GTP-dependent dephospho-CoA kinase family protein, at 440,453 to 440,929 _RS02345 MMP_RS02350: MMP_RS02350 - 30S ribosomal protein S24e, at 440,936 to 441,244 _RS02350 MMP_RS02355: MMP_RS02355 - 30S ribosomal protein S27ae, at 441,246 to 441,449 _RS02355 MMP_RS02360: MMP_RS02360 - hypothetical protein, at 441,547 to 441,783 _RS02360 Position (kb) 440 441Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 439.508 kb on + strandat 439.509 kb on - strandat 439.530 kb on + strandat 439.534 kb on + strandat 439.548 kb on - strandat 439.549 kb on + strandat 439.549 kb on + strandat 439.550 kb on - strandat 439.550 kb on - strandat 439.550 kb on - strandat 439.550 kb on - strandat 439.551 kb on + strandat 439.551 kb on + strandat 439.551 kb on + strandat 439.551 kb on + strandat 439.552 kb on - strandat 439.582 kb on + strandat 439.638 kb on + strandat 439.858 kb on - strandat 439.862 kb on - strandat 439.862 kb on - strandat 439.863 kb on + strandat 440.058 kb on - strandat 440.059 kb on + strandat 440.066 kb on + strandat 440.080 kb on + strandat 440.181 kb on - strandat 440.210 kb on - strandat 440.216 kb on - strandat 440.337 kb on + strand, within MMP_RS02340at 440.390 kb on - strand, within MMP_RS02340at 440.391 kb on + strand, within MMP_RS02340at 440.401 kb on - strand, within MMP_RS02340at 440.415 kb on - strandat 440.420 kb on + strandat 440.439 kb on - strandat 440.441 kb on - strandat 440.441 kb on - strandat 440.457 kb on + strandat 440.460 kb on - strandat 440.475 kb on - strandat 440.530 kb on + strand, within MMP_RS02345at 440.587 kb on - strand, within MMP_RS02345at 440.587 kb on - strand, within MMP_RS02345at 440.587 kb on - strand, within MMP_RS02345at 440.601 kb on - strand, within MMP_RS02345at 440.740 kb on + strand, within MMP_RS02345at 440.808 kb on + strand, within MMP_RS02345at 440.951 kb on + strandat 440.966 kb on + strandat 441.254 kb on - strandat 441.292 kb on + strand, within MMP_RS02355at 441.316 kb on - strand, within MMP_RS02355at 441.359 kb on + strand, within MMP_RS02355at 441.465 kb on + strandat 441.507 kb on + strandat 441.527 kb on - strandat 441.538 kb on - strandat 441.538 kb on - strandat 441.544 kb on - strandat 441.545 kb on + strandat 441.548 kb on - strandat 441.602 kb on - strand, within MMP_RS02360at 441.602 kb on - strand, within MMP_RS02360at 441.602 kb on - strand, within MMP_RS02360at 441.603 kb on + strand, within MMP_RS02360at 441.604 kb on - strand, within MMP_RS02360at 441.604 kb on - strand, within MMP_RS02360at 441.605 kb on + strand, within MMP_RS02360at 441.799 kb on + strandat 441.801 kb on + strandat 441.812 kb on - strandat 441.827 kb on + strandat 441.840 kb on - strandat 441.841 kb on + strandat 441.847 kb on - strandat 441.859 kb on - strandat 441.859 kb on - strandat 441.878 kb on - strandat 441.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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439,508 + +0.3
439,509 - +0.1
439,530 + +0.6
439,534 + -0.9
439,548 - -5.5
439,549 + -2.3
439,549 + -2.3
439,550 - -6.1
439,550 - -4.4
439,550 - -4.5
439,550 - -5.2
439,551 + -4.4
439,551 + -4.6
439,551 + -4.6
439,551 + -3.4
439,552 - -4.9
439,582 + -2.4
439,638 + -5.2
439,858 - -3.9
439,862 - -4.5
439,862 - -4.2
439,863 + -3.2
440,058 - -4.8
440,059 + -4.7
440,066 + -5.2
440,080 + -4.4
440,181 - -4.7
440,210 - -6.2
440,216 - -7.0
440,337 + MMP_RS02340 0.52 -3.0
440,390 - MMP_RS02340 0.82 -2.7
440,391 + MMP_RS02340 0.82 -2.4
440,401 - MMP_RS02340 0.88 -5.0
440,415 - -2.3
440,420 + -0.7
440,439 - -5.0
440,441 - -4.2
440,441 - -4.6
440,457 + -7.6
440,460 - -5.1
440,475 - -4.7
440,530 + MMP_RS02345 0.16 -3.7
440,587 - MMP_RS02345 0.28 -4.6
440,587 - MMP_RS02345 0.28 -4.7
440,587 - MMP_RS02345 0.28 -6.1
440,601 - MMP_RS02345 0.31 -4.1
440,740 + MMP_RS02345 0.60 -2.2
440,808 + MMP_RS02345 0.74 -4.1
440,951 + -1.0
440,966 + -3.5
441,254 - -7.5
441,292 + MMP_RS02355 0.23 -3.7
441,316 - MMP_RS02355 0.34 -5.1
441,359 + MMP_RS02355 0.55 -4.5
441,465 + +0.2
441,507 + +0.1
441,527 - -0.5
441,538 - +0.2
441,538 - +0.2
441,544 - +0.0
441,545 + +0.6
441,548 - -1.1
441,602 - MMP_RS02360 0.23 -0.4
441,602 - MMP_RS02360 0.23 -0.0
441,602 - MMP_RS02360 0.23 -0.1
441,603 + MMP_RS02360 0.24 +0.2
441,604 - MMP_RS02360 0.24 +0.7
441,604 - MMP_RS02360 0.24 -0.0
441,605 + MMP_RS02360 0.24 +0.1
441,799 + +0.5
441,801 + +0.2
441,812 - -0.6
441,827 + +1.1
441,840 - -0.3
441,841 + +0.4
441,847 - +0.5
441,859 - +0.4
441,859 - +1.1
441,878 - +0.5
441,879 + -0.1

Or see this region's nucleotide sequence