Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02240

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02235 and MMP_RS02240 are separated by 17 nucleotidesMMP_RS02240 and MMP_RS02245 are separated by 30 nucleotidesMMP_RS02245 and MMP_RS02250 are separated by 132 nucleotides MMP_RS02235: MMP_RS02235 - CBS domain-containing protein, at 422,287 to 423,252 _RS02235 MMP_RS02240: MMP_RS02240 - methanogenesis marker 7 protein, at 423,270 to 424,184 _RS02240 MMP_RS02245: MMP_RS02245 - hypothetical protein, at 424,215 to 424,667 _RS02245 MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188 _RS02250 Position (kb) 423 424 425Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 422.291 kb on - strandat 422.292 kb on + strandat 422.321 kb on - strandat 422.323 kb on - strandat 422.323 kb on - strandat 422.324 kb on + strandat 422.324 kb on + strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.352 kb on - strandat 422.356 kb on - strandat 422.356 kb on - strandat 422.357 kb on + strandat 422.357 kb on + strandat 422.360 kb on - strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.372 kb on - strandat 422.376 kb on - strandat 422.376 kb on - strandat 422.456 kb on - strand, within MMP_RS02235at 422.456 kb on - strand, within MMP_RS02235at 422.457 kb on + strand, within MMP_RS02235at 422.471 kb on - strand, within MMP_RS02235at 422.472 kb on + strand, within MMP_RS02235at 422.518 kb on + strand, within MMP_RS02235at 422.554 kb on + strand, within MMP_RS02235at 422.623 kb on + strand, within MMP_RS02235at 422.651 kb on - strand, within MMP_RS02235at 422.794 kb on + strand, within MMP_RS02235at 422.829 kb on - strand, within MMP_RS02235at 422.863 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235at 423.055 kb on + strand, within MMP_RS02235at 423.071 kb on - strand, within MMP_RS02235at 423.076 kb on + strand, within MMP_RS02235at 423.090 kb on + strand, within MMP_RS02235at 423.126 kb on + strand, within MMP_RS02235at 423.126 kb on + strand, within MMP_RS02235at 423.191 kb on - strandat 423.282 kb on + strandat 423.282 kb on + strandat 423.284 kb on - strandat 423.285 kb on + strandat 423.445 kb on + strand, within MMP_RS02240at 423.777 kb on - strand, within MMP_RS02240at 423.885 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 424.077 kb on - strand, within MMP_RS02240at 424.098 kb on - strandat 424.099 kb on + strandat 424.104 kb on + strandat 424.183 kb on + strandat 424.426 kb on - strand, within MMP_RS02245at 424.427 kb on + strand, within MMP_RS02245at 424.435 kb on + strand, within MMP_RS02245at 424.511 kb on - strand, within MMP_RS02245at 424.517 kb on + strand, within MMP_RS02245at 424.657 kb on - strandat 424.657 kb on - strandat 424.657 kb on - strandat 424.659 kb on - strandat 424.744 kb on - strandat 424.745 kb on + strandat 425.010 kb on + strand, within MMP_RS02250at 425.092 kb on - strand, within MMP_RS02250at 425.128 kb on - strand, within MMP_RS02250at 425.145 kb on + strand, within MMP_RS02250at 425.165 kb on - strand, within MMP_RS02250at 425.166 kb on + strand, within MMP_RS02250

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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422,291 - -2.1
422,292 + -1.1
422,321 - +0.5
422,323 - -1.7
422,323 - -0.9
422,324 + -1.3
422,324 + -1.2
422,325 - -1.4
422,325 - -0.0
422,325 - -1.8
422,326 + -1.9
422,326 + -1.4
422,326 + -1.0
422,352 - -0.9
422,356 - -2.0
422,356 - -1.5
422,357 + -0.4
422,357 + -0.4
422,360 - -0.9
422,368 - -1.2
422,368 - -1.2
422,372 - -0.6
422,376 - -1.1
422,376 - -0.7
422,456 - MMP_RS02235 0.17 -1.5
422,456 - MMP_RS02235 0.17 -1.2
422,457 + MMP_RS02235 0.18 -1.4
422,471 - MMP_RS02235 0.19 -1.0
422,472 + MMP_RS02235 0.19 -1.4
422,518 + MMP_RS02235 0.24 -1.2
422,554 + MMP_RS02235 0.28 -1.3
422,623 + MMP_RS02235 0.35 -0.7
422,651 - MMP_RS02235 0.38 -1.5
422,794 + MMP_RS02235 0.52 -1.1
422,829 - MMP_RS02235 0.56 -0.9
422,863 - MMP_RS02235 0.60 -1.3
422,938 - MMP_RS02235 0.67 -0.8
422,938 - MMP_RS02235 0.67 -1.1
423,055 + MMP_RS02235 0.80 -1.0
423,071 - MMP_RS02235 0.81 -1.4
423,076 + MMP_RS02235 0.82 -1.4
423,090 + MMP_RS02235 0.83 -4.0
423,126 + MMP_RS02235 0.87 -3.0
423,126 + MMP_RS02235 0.87 -3.1
423,191 - -5.2
423,282 + -4.0
423,282 + -3.6
423,284 - -4.6
423,285 + -4.1
423,445 + MMP_RS02240 0.19 -4.7
423,777 - MMP_RS02240 0.55 -4.6
423,885 + MMP_RS02240 0.67 -4.8
423,959 + MMP_RS02240 0.75 -5.0
423,959 + MMP_RS02240 0.75 -6.1
424,077 - MMP_RS02240 0.88 -5.3
424,098 - -4.4
424,099 + -5.0
424,104 + -4.1
424,183 + -0.7
424,426 - MMP_RS02245 0.47 -1.7
424,427 + MMP_RS02245 0.47 -1.7
424,435 + MMP_RS02245 0.49 -1.2
424,511 - MMP_RS02245 0.65 -2.2
424,517 + MMP_RS02245 0.67 -1.2
424,657 - +0.2
424,657 - -0.0
424,657 - -0.7
424,659 - -1.4
424,744 - +0.1
424,745 + +0.3
425,010 + MMP_RS02250 0.15 +0.4
425,092 - MMP_RS02250 0.21 +0.4
425,128 - MMP_RS02250 0.24 +0.8
425,145 + MMP_RS02250 0.25 +0.1
425,165 - MMP_RS02250 0.26 -0.6
425,166 + MMP_RS02250 0.26 +0.1

Or see this region's nucleotide sequence