Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02200 and MMP_RS02205 are separated by 62 nucleotides MMP_RS02205 and MMP_RS02210 are separated by 171 nucleotides
MMP_RS02200: MMP_RS02200 - methyl-accepting chemotaxis protein, at 411,833 to 414,028
_RS02200
MMP_RS02205: MMP_RS02205 - threonine--tRNA ligase, at 414,091 to 415,959
_RS02205
MMP_RS02210: MMP_RS02210 - bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase, at 416,131 to 417,777
_RS02210
Position (kb) 414
415
416 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 413.407 kb on - strand, within MMP_RS02200 at 413.416 kb on + strand, within MMP_RS02200 at 413.492 kb on + strand, within MMP_RS02200 at 413.688 kb on - strand, within MMP_RS02200 at 413.689 kb on + strand, within MMP_RS02200 at 414.023 kb on + strand at 414.043 kb on + strand at 414.976 kb on - strand at 415.055 kb on - strand at 415.056 kb on + strand at 415.261 kb on - strand at 415.974 kb on - strand at 415.975 kb on + strand at 416.040 kb on + strand at 416.051 kb on - strand at 416.157 kb on + strand at 416.445 kb on - strand at 416.719 kb on - strand at 416.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 413,407 - MMP_RS02200 0.72 +0.0 413,416 + MMP_RS02200 0.72 +1.0 413,492 + MMP_RS02200 0.76 +0.0 413,688 - MMP_RS02200 0.84 +0.1 413,689 + MMP_RS02200 0.85 +0.2 414,023 + -0.0 414,043 + +0.0 414,976 - -4.5 415,055 - -2.6 415,056 + -3.4 415,261 - -3.9 415,974 - -3.9 415,975 + -3.4 416,040 + -3.2 416,051 - -4.2 416,157 + -4.7 416,445 - -2.9 416,719 - -5.2 416,807 - -4.7
Or see this region's nucleotide sequence