Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02165

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02155 and MMP_RS02160 are separated by 105 nucleotidesMMP_RS02160 and MMP_RS02165 are separated by 27 nucleotidesMMP_RS02165 and MMP_RS02170 are separated by 14 nucleotidesMMP_RS02170 and MMP_RS02175 are separated by 158 nucleotides MMP_RS02155: MMP_RS02155 - 2-phospho-L-lactate transferase, at 403,481 to 404,410 _RS02155 MMP_RS02160: MMP_RS02160 - GTP cyclohydrolase IIa, at 404,516 to 405,316 _RS02160 MMP_RS02165: MMP_RS02165 - tRNA-dihydrouridine synthase, at 405,344 to 406,114 _RS02165 MMP_RS02170: MMP_RS02170 - CBS domain-containing protein, at 406,129 to 406,542 _RS02170 MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621 _RS02175 Position (kb) 405 406 407Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 404.452 kb on - strandat 404.455 kb on + strandat 404.500 kb on + strandat 404.511 kb on - strandat 404.619 kb on + strandat 405.112 kb on - strandat 405.289 kb on + strandat 405.294 kb on + strandat 405.299 kb on - strandat 405.299 kb on - strandat 405.354 kb on - strandat 405.434 kb on - strand, within MMP_RS02165at 405.657 kb on - strand, within MMP_RS02165at 405.658 kb on + strand, within MMP_RS02165at 405.682 kb on - strand, within MMP_RS02165at 405.842 kb on + strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.911 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.949 kb on + strand, within MMP_RS02165at 406.078 kb on + strandat 406.087 kb on - strandat 406.087 kb on - strandat 406.088 kb on + strandat 406.117 kb on + strandat 406.117 kb on + strandat 406.117 kb on + strandat 406.121 kb on - strandat 406.130 kb on - strandat 406.135 kb on - strandat 406.200 kb on - strand, within MMP_RS02170at 406.220 kb on + strand, within MMP_RS02170at 406.354 kb on - strand, within MMP_RS02170at 406.354 kb on - strand, within MMP_RS02170at 406.509 kb on - strandat 406.562 kb on - strandat 406.566 kb on + strandat 406.592 kb on + strandat 406.602 kb on + strandat 406.626 kb on - strandat 406.770 kb on + strandat 406.772 kb on + strandat 406.772 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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404,452 - -4.9
404,455 + -4.8
404,500 + -4.1
404,511 - -5.3
404,619 + -5.5
405,112 - -3.9
405,289 + -4.0
405,294 + -4.5
405,299 - -5.2
405,299 - -5.0
405,354 - -6.4
405,434 - MMP_RS02165 0.12 -4.5
405,657 - MMP_RS02165 0.41 -5.2
405,658 + MMP_RS02165 0.41 -6.3
405,682 - MMP_RS02165 0.44 -4.3
405,842 + MMP_RS02165 0.65 -3.7
405,910 - MMP_RS02165 0.73 -8.3
405,910 - MMP_RS02165 0.73 -6.0
405,910 - MMP_RS02165 0.73 -6.6
405,911 + MMP_RS02165 0.74 -5.1
405,913 + MMP_RS02165 0.74 -3.3
405,913 + MMP_RS02165 0.74 -5.4
405,913 + MMP_RS02165 0.74 -4.9
405,913 + MMP_RS02165 0.74 -5.6
405,913 + MMP_RS02165 0.74 -5.5
405,913 + MMP_RS02165 0.74 -6.7
405,949 + MMP_RS02165 0.78 -4.3
406,078 + -6.8
406,087 - -3.1
406,087 - -5.1
406,088 + -4.3
406,117 + +0.4
406,117 + -0.2
406,117 + +0.4
406,121 - +0.1
406,130 - +0.3
406,135 - +0.0
406,200 - MMP_RS02170 0.17 -0.3
406,220 + MMP_RS02170 0.22 +0.3
406,354 - MMP_RS02170 0.54 -0.6
406,354 - MMP_RS02170 0.54 -0.3
406,509 - -0.1
406,562 - -0.1
406,566 + -0.3
406,592 + -1.7
406,602 + -0.2
406,626 - -1.5
406,770 + -1.8
406,772 + -2.1
406,772 + -1.0

Or see this region's nucleotide sequence