Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01960

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01950 and MMP_RS01955 are separated by 188 nucleotidesMMP_RS01955 and MMP_RS01960 are separated by 12 nucleotidesMMP_RS01960 and MMP_RS01965 are separated by 18 nucleotidesMMP_RS01965 and MMP_RS01970 are separated by 268 nucleotides MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307 _RS01950 MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086 _RS01955 MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338 _RS01960 MMP_RS01965: MMP_RS01965 - DUF1616 domain-containing protein, at 364,357 to 364,705 _RS01965 MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938 _RS01970 Position (kb) 364 365Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 363.101 kb on + strand, within MMP_RS01950at 363.114 kb on - strand, within MMP_RS01950at 363.115 kb on + strand, within MMP_RS01950at 363.115 kb on + strand, within MMP_RS01950at 363.122 kb on + strand, within MMP_RS01950at 363.125 kb on + strandat 363.263 kb on - strandat 363.269 kb on + strandat 363.272 kb on - strandat 363.272 kb on - strandat 363.273 kb on + strandat 363.273 kb on + strandat 363.282 kb on + strandat 363.284 kb on - strandat 363.380 kb on - strandat 363.394 kb on + strandat 363.404 kb on + strandat 363.415 kb on + strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.423 kb on - strandat 363.424 kb on + strandat 363.426 kb on + strandat 363.592 kb on - strand, within MMP_RS01955at 363.593 kb on + strand, within MMP_RS01955at 363.593 kb on + strand, within MMP_RS01955at 363.827 kb on - strand, within MMP_RS01955at 363.830 kb on - strand, within MMP_RS01955at 364.269 kb on - strand, within MMP_RS01960at 364.276 kb on - strand, within MMP_RS01960at 364.321 kb on - strandat 364.321 kb on - strandat 364.322 kb on + strandat 364.324 kb on + strandat 364.324 kb on + strandat 364.326 kb on - strandat 364.466 kb on + strand, within MMP_RS01965at 364.481 kb on + strand, within MMP_RS01965at 364.555 kb on + strand, within MMP_RS01965at 364.566 kb on - strand, within MMP_RS01965at 364.589 kb on + strand, within MMP_RS01965at 364.628 kb on + strand, within MMP_RS01965at 364.676 kb on - strandat 364.838 kb on - strandat 364.838 kb on - strandat 364.839 kb on + strandat 364.843 kb on - strandat 364.898 kb on + strandat 364.899 kb on - strandat 364.900 kb on + strandat 364.905 kb on - strandat 364.906 kb on + strandat 364.908 kb on + strandat 364.916 kb on - strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.922 kb on - strandat 364.923 kb on + strandat 364.931 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.958 kb on - strandat 364.971 kb on + strandat 365.012 kb on + strandat 365.023 kb on - strandat 365.023 kb on - strandat 365.024 kb on + strandat 365.027 kb on - strandat 365.194 kb on - strand, within MMP_RS01970at 365.274 kb on - strand, within MMP_RS01970

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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363,101 + MMP_RS01950 0.89 -3.7
363,114 - MMP_RS01950 0.89 -1.5
363,115 + MMP_RS01950 0.89 -0.3
363,115 + MMP_RS01950 0.89 -3.0
363,122 + MMP_RS01950 0.90 -1.9
363,125 + -2.5
363,263 - -0.7
363,269 + -2.7
363,272 - -6.8
363,272 - -3.7
363,273 + -3.3
363,273 + -5.9
363,282 + -5.3
363,284 - -5.4
363,380 - -3.2
363,394 + -5.2
363,404 + -5.7
363,415 + -4.6
363,423 - -2.1
363,423 - -4.4
363,423 - -3.7
363,423 - -5.8
363,424 + -6.0
363,426 + -2.7
363,592 - MMP_RS01955 0.16 -5.7
363,593 + MMP_RS01955 0.16 -5.2
363,593 + MMP_RS01955 0.16 -5.3
363,827 - MMP_RS01955 0.56 -5.2
363,830 - MMP_RS01955 0.57 -3.0
364,269 - MMP_RS01960 0.71 -4.9
364,276 - MMP_RS01960 0.74 -2.8
364,321 - -0.4
364,321 - -0.5
364,322 + +0.2
364,324 + -3.4
364,324 + -4.9
364,326 - -5.1
364,466 + MMP_RS01965 0.31 +0.3
364,481 + MMP_RS01965 0.36 +0.2
364,555 + MMP_RS01965 0.57 +0.8
364,566 - MMP_RS01965 0.60 +0.5
364,589 + MMP_RS01965 0.66 -0.2
364,628 + MMP_RS01965 0.78 +0.1
364,676 - +0.1
364,838 - +0.5
364,838 - +0.1
364,839 + +0.7
364,843 - +0.7
364,898 + -3.0
364,899 - -2.9
364,900 + -0.6
364,905 - -3.0
364,906 + -6.8
364,908 + -2.7
364,916 - -3.3
364,917 + -3.6
364,917 + -2.8
364,917 + -4.0
364,917 + -4.1
364,918 - -3.0
364,918 - -3.7
364,918 - -4.5
364,918 - -3.9
364,918 - -3.3
364,918 - -2.8
364,919 + -3.3
364,919 + -3.7
364,919 + -2.5
364,919 + -3.2
364,919 + -3.1
364,922 - -3.7
364,923 + -2.8
364,931 - -3.5
364,949 - -4.0
364,949 - -2.4
364,949 - -3.7
364,949 - -4.6
364,958 - -6.0
364,971 + -2.7
365,012 + -3.6
365,023 - -2.4
365,023 - -2.7
365,024 + -3.8
365,027 - -3.7
365,194 - MMP_RS01970 0.11 -3.0
365,274 - MMP_RS01970 0.15 -3.4

Or see this region's nucleotide sequence