Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01800

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01785 and MMP_RS01790 are separated by 47 nucleotidesMMP_RS01790 and MMP_RS01795 are separated by 16 nucleotidesMMP_RS01795 and MMP_RS01800 are separated by 28 nucleotidesMMP_RS01800 and MMP_RS01805 are separated by 118 nucleotidesMMP_RS01805 and MMP_RS01810 are separated by 110 nucleotidesMMP_RS01810 and MMP_RS01815 are separated by 27 nucleotides MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743 _RS01785 MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198 _RS01790 MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661 _RS01795 MMP_RS01800: MMP_RS01800 - TIGR00303 family protein, at 333,690 to 334,742 _RS01800 MMP_RS01805: MMP_RS01805 - NUDIX hydrolase, at 334,861 to 335,376 _RS01805 MMP_RS01810: MMP_RS01810 - tRNA-Arg, at 335,487 to 335,564 _RS01810 MMP_RS01815: MMP_RS01815 - tRNA-Glu, at 335,592 to 335,666 _RS01815 Position (kb) 333 334 335Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 332.696 kb on - strand, within MMP_RS01785at 332.696 kb on - strand, within MMP_RS01785at 332.697 kb on + strand, within MMP_RS01785at 332.697 kb on + strand, within MMP_RS01785at 332.700 kb on - strand, within MMP_RS01785at 332.700 kb on - strand, within MMP_RS01785at 332.701 kb on + strand, within MMP_RS01785at 332.727 kb on - strandat 332.731 kb on - strandat 332.779 kb on + strandat 332.779 kb on + strandat 332.788 kb on + strandat 332.789 kb on - strandat 332.789 kb on - strandat 332.790 kb on + strandat 332.790 kb on + strandat 332.792 kb on - strandat 333.021 kb on + strand, within MMP_RS01790at 333.023 kb on - strand, within MMP_RS01790at 333.023 kb on - strand, within MMP_RS01790at 333.024 kb on + strand, within MMP_RS01790at 333.045 kb on - strand, within MMP_RS01790at 333.089 kb on + strand, within MMP_RS01790at 333.154 kb on - strand, within MMP_RS01790at 333.189 kb on - strandat 333.213 kb on + strandat 333.461 kb on + strand, within MMP_RS01795at 333.467 kb on + strand, within MMP_RS01795at 333.500 kb on - strand, within MMP_RS01795at 333.672 kb on - strandat 333.736 kb on - strandat 333.829 kb on - strand, within MMP_RS01800at 334.047 kb on - strand, within MMP_RS01800at 334.048 kb on + strand, within MMP_RS01800at 334.059 kb on + strand, within MMP_RS01800at 334.222 kb on + strand, within MMP_RS01800at 334.537 kb on + strand, within MMP_RS01800at 334.569 kb on - strand, within MMP_RS01800at 334.572 kb on + strand, within MMP_RS01800at 334.576 kb on + strand, within MMP_RS01800at 334.603 kb on - strand, within MMP_RS01800at 334.666 kb on + strandat 334.668 kb on + strandat 334.680 kb on - strandat 334.734 kb on + strandat 334.771 kb on + strandat 334.774 kb on - strandat 334.778 kb on + strandat 334.870 kb on + strandat 334.874 kb on - strandat 335.014 kb on - strand, within MMP_RS01805at 335.056 kb on - strand, within MMP_RS01805at 335.292 kb on - strand, within MMP_RS01805at 335.293 kb on + strand, within MMP_RS01805at 335.306 kb on - strand, within MMP_RS01805at 335.362 kb on - strandat 335.363 kb on + strandat 335.364 kb on - strandat 335.364 kb on - strandat 335.364 kb on - strandat 335.366 kb on - strandat 335.398 kb on + strandat 335.458 kb on - strandat 335.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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332,696 - MMP_RS01785 0.88 -1.3
332,696 - MMP_RS01785 0.88 +1.1
332,697 + MMP_RS01785 0.89 +1.3
332,697 + MMP_RS01785 0.89 +1.3
332,700 - MMP_RS01785 0.89 +0.8
332,700 - MMP_RS01785 0.89 +1.0
332,701 + MMP_RS01785 0.90 +0.5
332,727 - +0.9
332,731 - +1.1
332,779 + +0.3
332,779 + +0.8
332,788 + +0.5
332,789 - +0.2
332,789 - -0.1
332,790 + +0.6
332,790 + +0.4
332,792 - -0.4
333,021 + MMP_RS01790 0.56 +0.3
333,023 - MMP_RS01790 0.57 -0.2
333,023 - MMP_RS01790 0.57 +0.0
333,024 + MMP_RS01790 0.57 +0.1
333,045 - MMP_RS01790 0.62 +0.0
333,089 + MMP_RS01790 0.73 +0.3
333,154 - MMP_RS01790 0.89 +0.0
333,189 - -0.1
333,213 + -0.8
333,461 + MMP_RS01795 0.55 -4.8
333,467 + MMP_RS01795 0.56 -5.5
333,500 - MMP_RS01795 0.64 -4.3
333,672 - -3.8
333,736 - -3.2
333,829 - MMP_RS01800 0.13 -4.5
334,047 - MMP_RS01800 0.34 -4.3
334,048 + MMP_RS01800 0.34 -5.2
334,059 + MMP_RS01800 0.35 -4.6
334,222 + MMP_RS01800 0.51 -2.9
334,537 + MMP_RS01800 0.80 -4.9
334,569 - MMP_RS01800 0.83 -4.7
334,572 + MMP_RS01800 0.84 -5.2
334,576 + MMP_RS01800 0.84 -5.2
334,603 - MMP_RS01800 0.87 -4.1
334,666 + -5.1
334,668 + -4.1
334,680 - -3.4
334,734 + -5.2
334,771 + -6.8
334,774 - -0.1
334,778 + -6.1
334,870 + +0.4
334,874 - -0.5
335,014 - MMP_RS01805 0.30 +0.5
335,056 - MMP_RS01805 0.38 +0.5
335,292 - MMP_RS01805 0.84 -0.8
335,293 + MMP_RS01805 0.84 -0.0
335,306 - MMP_RS01805 0.86 -0.2
335,362 - -0.1
335,363 + +0.2
335,364 - +2.6
335,364 - +0.3
335,364 - +0.5
335,366 - -0.2
335,398 + +0.9
335,458 - -3.9
335,721 - +0.3

Or see this region's nucleotide sequence