Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01755

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01745 and MMP_RS01750 are separated by 109 nucleotidesMMP_RS01750 and MMP_RS01755 are separated by 14 nucleotidesMMP_RS01755 and MMP_RS01760 are separated by 14 nucleotidesMMP_RS01760 and MMP_RS01765 are separated by 1 nucleotides MMP_RS01745: MMP_RS01745 - AMP phosphorylase, at 324,525 to 326,042 _RS01745 MMP_RS01750: MMP_RS01750 - DUF63 family protein, at 326,152 to 326,958 _RS01750 MMP_RS01755: MMP_RS01755 - DUF2097 domain-containing protein, at 326,973 to 327,263 _RS01755 MMP_RS01760: MMP_RS01760 - cobalt-precorrin-8 methylmutase, at 327,278 to 327,910 _RS01760 MMP_RS01765: MMP_RS01765 - HIT family protein, at 327,912 to 328,304 _RS01765 Position (kb) 326 327 328Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 326.019 kb on + strandat 326.058 kb on - strandat 326.060 kb on - strandat 326.060 kb on - strandat 326.061 kb on + strandat 326.061 kb on + strandat 326.065 kb on + strandat 326.081 kb on + strandat 326.087 kb on + strandat 326.116 kb on + strandat 326.131 kb on + strandat 326.194 kb on - strandat 326.195 kb on + strandat 326.227 kb on + strandat 326.268 kb on + strand, within MMP_RS01750at 326.338 kb on + strand, within MMP_RS01750at 326.445 kb on - strand, within MMP_RS01750at 326.445 kb on - strand, within MMP_RS01750at 326.449 kb on - strand, within MMP_RS01750at 326.450 kb on + strand, within MMP_RS01750at 326.501 kb on + strand, within MMP_RS01750at 326.501 kb on + strand, within MMP_RS01750at 326.505 kb on + strand, within MMP_RS01750at 326.585 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.603 kb on - strand, within MMP_RS01750at 326.613 kb on + strand, within MMP_RS01750at 326.617 kb on - strand, within MMP_RS01750at 326.620 kb on - strand, within MMP_RS01750at 326.620 kb on - strand, within MMP_RS01750at 326.621 kb on + strand, within MMP_RS01750at 326.633 kb on + strand, within MMP_RS01750at 326.837 kb on - strand, within MMP_RS01750at 326.881 kb on + strandat 327.036 kb on - strand, within MMP_RS01755at 327.052 kb on - strand, within MMP_RS01755at 327.268 kb on - strandat 328.188 kb on - strand, within MMP_RS01765at 328.189 kb on + strand, within MMP_RS01765at 328.191 kb on - strand, within MMP_RS01765at 328.196 kb on - strand, within MMP_RS01765at 328.197 kb on + strand, within MMP_RS01765at 328.226 kb on - strand, within MMP_RS01765at 328.257 kb on - strand, within MMP_RS01765

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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326,019 + +0.5
326,058 - +0.5
326,060 - +0.9
326,060 - +1.2
326,061 + +0.2
326,061 + -0.6
326,065 + -0.3
326,081 + -1.2
326,087 + -2.1
326,116 + -0.2
326,131 + -1.3
326,194 - -2.4
326,195 + -0.6
326,227 + -0.9
326,268 + MMP_RS01750 0.14 -0.7
326,338 + MMP_RS01750 0.23 -0.8
326,445 - MMP_RS01750 0.36 -0.6
326,445 - MMP_RS01750 0.36 -0.8
326,449 - MMP_RS01750 0.37 -5.0
326,450 + MMP_RS01750 0.37 -2.3
326,501 + MMP_RS01750 0.43 -0.5
326,501 + MMP_RS01750 0.43 -1.1
326,505 + MMP_RS01750 0.44 -1.0
326,585 - MMP_RS01750 0.54 -4.0
326,590 - MMP_RS01750 0.54 -2.5
326,590 - MMP_RS01750 0.54 -0.8
326,590 - MMP_RS01750 0.54 -2.9
326,590 - MMP_RS01750 0.54 -2.0
326,590 - MMP_RS01750 0.54 -4.4
326,591 + MMP_RS01750 0.54 -0.9
326,591 + MMP_RS01750 0.54 -2.1
326,591 + MMP_RS01750 0.54 -0.8
326,603 - MMP_RS01750 0.56 -2.2
326,613 + MMP_RS01750 0.57 -0.6
326,617 - MMP_RS01750 0.58 -2.5
326,620 - MMP_RS01750 0.58 -3.3
326,620 - MMP_RS01750 0.58 -2.0
326,621 + MMP_RS01750 0.58 -0.9
326,633 + MMP_RS01750 0.60 -1.8
326,837 - MMP_RS01750 0.85 -0.2
326,881 + -0.9
327,036 - MMP_RS01755 0.22 -5.5
327,052 - MMP_RS01755 0.27 -4.8
327,268 - -4.1
328,188 - MMP_RS01765 0.70 -0.3
328,189 + MMP_RS01765 0.70 +0.8
328,191 - MMP_RS01765 0.71 +0.0
328,196 - MMP_RS01765 0.72 -0.5
328,197 + MMP_RS01765 0.73 -1.2
328,226 - MMP_RS01765 0.80 -0.1
328,257 - MMP_RS01765 0.88 +0.0

Or see this region's nucleotide sequence