Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01335

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01330 and MMP_RS01335 are separated by 37 nucleotidesMMP_RS01335 and MMP_RS01340 are separated by 57 nucleotidesMMP_RS01340 and MMP_RS01345 are separated by 7 nucleotidesMMP_RS01345 and MMP_RS01350 overlap by 1 nucleotides MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767 _RS01330 MMP_RS01335: MMP_RS01335 - prefoldin subunit beta, at 249,805 to 250,146 _RS01335 MMP_RS01340: MMP_RS01340 - KEOPS complex Pcc1-like subunit, at 250,204 to 250,455 _RS01340 MMP_RS01345: MMP_RS01345 - rRNA maturation protein, at 250,463 to 250,957 _RS01345 MMP_RS01350: MMP_RS01350 - DNA-directed RNA polymerase subunit P, at 250,957 to 251,097 _RS01350 Position (kb) 249 250 251Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 248.973 kb on - strand, within MMP_RS01330at 248.987 kb on - strand, within MMP_RS01330at 249.032 kb on - strand, within MMP_RS01330at 249.033 kb on + strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.090 kb on + strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.098 kb on - strand, within MMP_RS01330at 249.126 kb on + strand, within MMP_RS01330at 249.181 kb on - strand, within MMP_RS01330at 249.201 kb on - strand, within MMP_RS01330at 249.201 kb on - strand, within MMP_RS01330at 249.202 kb on + strand, within MMP_RS01330at 249.202 kb on + strand, within MMP_RS01330at 249.203 kb on - strand, within MMP_RS01330at 249.203 kb on - strand, within MMP_RS01330at 249.225 kb on - strand, within MMP_RS01330at 249.230 kb on - strand, within MMP_RS01330at 249.231 kb on + strand, within MMP_RS01330at 249.267 kb on + strand, within MMP_RS01330at 249.267 kb on + strand, within MMP_RS01330at 249.271 kb on - strand, within MMP_RS01330at 249.437 kb on - strand, within MMP_RS01330at 249.449 kb on - strand, within MMP_RS01330at 249.450 kb on + strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.555 kb on - strand, within MMP_RS01330at 249.588 kb on - strand, within MMP_RS01330at 249.604 kb on + strand, within MMP_RS01330at 249.714 kb on - strandat 249.790 kb on - strandat 249.806 kb on - strandat 249.854 kb on - strand, within MMP_RS01335at 249.891 kb on - strand, within MMP_RS01335at 250.181 kb on + strandat 250.192 kb on + strandat 250.202 kb on - strandat 250.206 kb on + strandat 250.226 kb on - strandat 250.226 kb on - strandat 250.227 kb on + strandat 250.260 kb on + strandat 250.265 kb on - strandat 250.458 kb on - strandat 250.603 kb on + strandat 250.606 kb on - strandat 250.811 kb on - strandat 250.811 kb on - strandat 250.812 kb on + strandat 250.818 kb on + strandat 250.977 kb on - strandat 250.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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248,973 - MMP_RS01330 0.22 -1.7
248,987 - MMP_RS01330 0.23 -3.6
249,032 - MMP_RS01330 0.28 -2.5
249,033 + MMP_RS01330 0.28 -6.4
249,036 - MMP_RS01330 0.28 -2.3
249,036 - MMP_RS01330 0.28 -2.3
249,090 + MMP_RS01330 0.33 -7.2
249,094 - MMP_RS01330 0.34 -2.4
249,094 - MMP_RS01330 0.34 -1.6
249,094 - MMP_RS01330 0.34 -3.8
249,095 + MMP_RS01330 0.34 -6.1
249,095 + MMP_RS01330 0.34 -5.4
249,098 - MMP_RS01330 0.34 -2.0
249,126 + MMP_RS01330 0.37 -6.2
249,181 - MMP_RS01330 0.42 -3.1
249,201 - MMP_RS01330 0.44 -2.4
249,201 - MMP_RS01330 0.44 -1.6
249,202 + MMP_RS01330 0.44 -6.7
249,202 + MMP_RS01330 0.44 -4.7
249,203 - MMP_RS01330 0.44 -1.6
249,203 - MMP_RS01330 0.44 -3.1
249,225 - MMP_RS01330 0.47 -2.3
249,230 - MMP_RS01330 0.47 -1.2
249,231 + MMP_RS01330 0.47 -7.4
249,267 + MMP_RS01330 0.51 -6.1
249,267 + MMP_RS01330 0.51 -5.0
249,271 - MMP_RS01330 0.51 -1.9
249,437 - MMP_RS01330 0.67 -1.8
249,449 - MMP_RS01330 0.69 -1.0
249,450 + MMP_RS01330 0.69 -7.3
249,534 - MMP_RS01330 0.77 -4.2
249,534 - MMP_RS01330 0.77 -4.0
249,534 - MMP_RS01330 0.77 -4.3
249,555 - MMP_RS01330 0.79 -3.4
249,588 - MMP_RS01330 0.82 -3.1
249,604 + MMP_RS01330 0.84 -3.3
249,714 - -3.7
249,790 - -4.6
249,806 - -4.7
249,854 - MMP_RS01335 0.14 -6.2
249,891 - MMP_RS01335 0.25 -6.1
250,181 + -5.3
250,192 + -5.2
250,202 - -4.7
250,206 + -4.9
250,226 - -5.5
250,226 - -4.8
250,227 + -6.1
250,260 + -4.7
250,265 - -4.8
250,458 - -4.0
250,603 + -5.9
250,606 - -5.2
250,811 - -4.2
250,811 - -6.2
250,812 + -1.5
250,818 + -6.2
250,977 - -5.1
250,993 - -3.6

Or see this region's nucleotide sequence