Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01225

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01215 and MMP_RS01220 are separated by 78 nucleotidesMMP_RS01220 and MMP_RS01225 are separated by 9 nucleotidesMMP_RS01225 and MMP_RS01230 are separated by 9 nucleotides MMP_RS01215: MMP_RS01215 - sodium/proline symporter PutP, at 229,031 to 230,509 _RS01215 MMP_RS01220: MMP_RS01220 - hypothetical protein, at 230,588 to 230,827 _RS01220 MMP_RS01225: MMP_RS01225 - DUF5379 domain-containing protein, at 230,837 to 231,115 _RS01225 MMP_RS01230: MMP_RS01230 - glutamate-1-semialdehyde 2 1-aminomutase, at 231,125 to 232,408 _RS01230 Position (kb) 230 231 232Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 229.965 kb on - strand, within MMP_RS01215at 229.966 kb on + strand, within MMP_RS01215at 230.437 kb on + strandat 230.544 kb on + strandat 230.544 kb on + strandat 230.544 kb on + strandat 230.547 kb on - strandat 230.548 kb on + strandat 230.557 kb on + strandat 230.557 kb on + strandat 230.588 kb on + strandat 230.637 kb on - strand, within MMP_RS01220at 230.687 kb on + strand, within MMP_RS01220at 230.705 kb on + strand, within MMP_RS01220at 230.720 kb on - strand, within MMP_RS01220at 230.724 kb on - strand, within MMP_RS01220at 230.724 kb on - strand, within MMP_RS01220at 230.743 kb on + strand, within MMP_RS01220at 230.755 kb on - strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.759 kb on - strand, within MMP_RS01220at 230.760 kb on + strand, within MMP_RS01220at 230.762 kb on + strand, within MMP_RS01220at 230.762 kb on + strand, within MMP_RS01220at 230.792 kb on + strand, within MMP_RS01220at 230.844 kb on - strandat 230.844 kb on - strandat 230.906 kb on - strand, within MMP_RS01225at 230.906 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.955 kb on - strand, within MMP_RS01225at 230.974 kb on + strand, within MMP_RS01225at 230.977 kb on - strand, within MMP_RS01225at 230.977 kb on - strand, within MMP_RS01225at 231.095 kb on - strandat 231.162 kb on - strandat 231.357 kb on - strandat 231.734 kb on + strandat 232.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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229,965 - MMP_RS01215 0.63 -0.5
229,966 + MMP_RS01215 0.63 +0.2
230,437 + +0.2
230,544 + -5.3
230,544 + -5.5
230,544 + -5.1
230,547 - -6.7
230,548 + -3.9
230,557 + -2.3
230,557 + -4.7
230,588 + -3.5
230,637 - MMP_RS01220 0.20 -6.4
230,687 + MMP_RS01220 0.41 -5.9
230,705 + MMP_RS01220 0.49 -5.9
230,720 - MMP_RS01220 0.55 -6.6
230,724 - MMP_RS01220 0.57 -4.2
230,724 - MMP_RS01220 0.57 -4.1
230,743 + MMP_RS01220 0.65 -5.4
230,755 - MMP_RS01220 0.70 -5.4
230,756 + MMP_RS01220 0.70 -4.9
230,756 + MMP_RS01220 0.70 -6.9
230,756 + MMP_RS01220 0.70 -5.9
230,759 - MMP_RS01220 0.71 -6.2
230,760 + MMP_RS01220 0.72 -7.1
230,762 + MMP_RS01220 0.72 -5.0
230,762 + MMP_RS01220 0.72 -5.9
230,792 + MMP_RS01220 0.85 -6.8
230,844 - -6.5
230,844 - -6.1
230,906 - MMP_RS01225 0.25 -6.5
230,906 - MMP_RS01225 0.25 -5.6
230,912 - MMP_RS01225 0.27 -5.5
230,912 - MMP_RS01225 0.27 -4.8
230,912 - MMP_RS01225 0.27 -5.0
230,955 - MMP_RS01225 0.42 -7.1
230,974 + MMP_RS01225 0.49 -6.3
230,977 - MMP_RS01225 0.50 -4.0
230,977 - MMP_RS01225 0.50 -5.2
231,095 - -4.5
231,162 - -6.1
231,357 - -6.3
231,734 + -5.8
232,022 + -5.3

Or see this region's nucleotide sequence