Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01005

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01000 and MMP_RS01005 are separated by 174 nucleotidesMMP_RS01005 and MMP_RS01010 are separated by 128 nucleotidesMMP_RS01010 and MMP_RS01015 are separated by 250 nucleotides MMP_RS01000: MMP_RS01000 - AIR synthase related protein, at 187,497 to 190,466 _RS01000 MMP_RS01005: MMP_RS01005 - riboflavin synthase, at 190,641 to 191,111 _RS01005 MMP_RS01010: MMP_RS01010 - DUF4352 domain-containing protein, at 191,240 to 191,773 _RS01010 MMP_RS01015: MMP_RS01015 - hypothetical protein, at 192,024 to 192,236 _RS01015 Position (kb) 190 191 192Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 189.906 kb on - strandat 190.090 kb on + strandat 190.542 kb on - strandat 190.547 kb on - strandat 190.549 kb on - strandat 190.579 kb on - strandat 190.589 kb on + strandat 190.627 kb on + strandat 190.729 kb on - strand, within MMP_RS01005at 190.730 kb on + strand, within MMP_RS01005at 191.097 kb on - strandat 191.144 kb on - strandat 191.151 kb on - strandat 191.152 kb on + strandat 191.186 kb on - strandat 191.191 kb on - strandat 191.273 kb on - strandat 191.273 kb on - strandat 191.274 kb on + strandat 191.280 kb on - strandat 191.281 kb on + strandat 191.303 kb on + strand, within MMP_RS01010at 191.309 kb on - strand, within MMP_RS01010at 191.396 kb on - strand, within MMP_RS01010at 191.397 kb on + strand, within MMP_RS01010at 191.397 kb on + strand, within MMP_RS01010at 191.442 kb on + strand, within MMP_RS01010at 191.478 kb on + strand, within MMP_RS01010at 191.519 kb on + strand, within MMP_RS01010at 191.522 kb on - strand, within MMP_RS01010at 191.523 kb on + strand, within MMP_RS01010at 191.572 kb on - strand, within MMP_RS01010at 191.572 kb on - strand, within MMP_RS01010at 191.715 kb on + strand, within MMP_RS01010at 191.740 kb on - strandat 191.750 kb on - strandat 191.750 kb on - strandat 191.753 kb on - strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.755 kb on - strandat 191.756 kb on + strandat 191.779 kb on - strandat 191.780 kb on + strandat 191.781 kb on - strandat 191.795 kb on - strandat 191.795 kb on - strandat 191.795 kb on - strandat 191.801 kb on + strandat 191.801 kb on + strandat 191.841 kb on + strandat 191.852 kb on + strandat 191.854 kb on - strandat 191.855 kb on + strandat 191.871 kb on + strandat 191.874 kb on - strandat 191.875 kb on + strandat 191.912 kb on - strandat 191.993 kb on - strandat 191.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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189,906 - -2.4
190,090 + -3.9
190,542 - -6.1
190,547 - -5.1
190,549 - -5.5
190,579 - +0.2
190,589 + +0.7
190,627 + +0.9
190,729 - MMP_RS01005 0.19 -4.9
190,730 + MMP_RS01005 0.19 -5.7
191,097 - -6.5
191,144 - -8.0
191,151 - -5.3
191,152 + -6.6
191,186 - +0.4
191,191 - +0.4
191,273 - +0.5
191,273 - -0.1
191,274 + -0.6
191,280 - -0.2
191,281 + +0.3
191,303 + MMP_RS01010 0.12 +0.3
191,309 - MMP_RS01010 0.13 +0.1
191,396 - MMP_RS01010 0.29 +0.6
191,397 + MMP_RS01010 0.29 +0.9
191,397 + MMP_RS01010 0.29 -0.4
191,442 + MMP_RS01010 0.38 +0.2
191,478 + MMP_RS01010 0.45 +0.4
191,519 + MMP_RS01010 0.52 +0.5
191,522 - MMP_RS01010 0.53 +0.4
191,523 + MMP_RS01010 0.53 +0.3
191,572 - MMP_RS01010 0.62 -0.3
191,572 - MMP_RS01010 0.62 +0.1
191,715 + MMP_RS01010 0.89 +0.7
191,740 - -0.2
191,750 - +0.2
191,750 - +0.7
191,753 - -0.1
191,754 + +0.3
191,754 + +0.9
191,754 + -0.7
191,755 - +0.3
191,756 + +0.2
191,779 - +0.5
191,780 + +0.8
191,781 - +0.1
191,795 - -0.2
191,795 - +0.2
191,795 - +1.1
191,801 + -0.0
191,801 + +0.8
191,841 + +0.0
191,852 + +0.1
191,854 - -0.2
191,855 + +0.5
191,871 + -0.5
191,874 - +0.5
191,875 + +0.2
191,912 - +0.4
191,993 - +0.0
191,994 + +0.4

Or see this region's nucleotide sequence