Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00305

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00290 and MMP_RS00295 are separated by 38 nucleotidesMMP_RS00295 and MMP_RS00300 are separated by 48 nucleotidesMMP_RS00300 and MMP_RS00305 are separated by 37 nucleotidesMMP_RS00305 and MMP_RS00310 are separated by 1 nucleotides MMP_RS00290: MMP_RS00290 - hypothetical protein, at 65,556 to 65,828 _RS00290 MMP_RS00295: MMP_RS00295 - gamma carbonic anhydrase family protein, at 65,867 to 66,322 _RS00295 MMP_RS00300: MMP_RS00300 - 6 7-dimethyl-8-ribityllumazine synthase, at 66,371 to 66,784 _RS00300 MMP_RS00305: MMP_RS00305 - phosphoribosyl-ATP diphosphatase, at 66,822 to 67,112 _RS00305 MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025 _RS00310 Position (kb) 66 67 68Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 65.854 kb on - strandat 65.855 kb on + strandat 65.864 kb on + strandat 65.865 kb on - strandat 65.866 kb on + strandat 65.946 kb on - strand, within MMP_RS00295at 66.252 kb on - strand, within MMP_RS00295at 66.320 kb on - strandat 66.320 kb on - strandat 66.713 kb on + strand, within MMP_RS00300at 66.841 kb on - strandat 66.841 kb on - strandat 66.843 kb on - strandat 66.888 kb on - strand, within MMP_RS00305at 66.889 kb on + strand, within MMP_RS00305at 66.897 kb on + strand, within MMP_RS00305at 66.972 kb on + strand, within MMP_RS00305at 66.975 kb on + strand, within MMP_RS00305at 67.115 kb on - strandat 67.115 kb on - strandat 67.152 kb on - strandat 67.162 kb on - strandat 67.163 kb on + strandat 67.174 kb on + strandat 67.269 kb on + strand, within MMP_RS00310at 67.295 kb on - strand, within MMP_RS00310at 67.297 kb on - strand, within MMP_RS00310at 67.369 kb on - strand, within MMP_RS00310at 67.370 kb on + strand, within MMP_RS00310at 67.439 kb on + strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.477 kb on + strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.496 kb on + strand, within MMP_RS00310at 67.544 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.569 kb on - strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.815 kb on + strand, within MMP_RS00310at 67.834 kb on + strand, within MMP_RS00310at 67.883 kb on + strand, within MMP_RS00310at 67.996 kb on - strandat 68.011 kb on - strandat 68.011 kb on - strandat 68.017 kb on + strandat 68.017 kb on + strandat 68.026 kb on + strandat 68.049 kb on - strandat 68.060 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.075 kb on + strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.077 kb on + strandat 68.079 kb on + strandat 68.099 kb on - strandat 68.103 kb on + strandat 68.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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65,854 - +0.8
65,855 + +0.3
65,864 + +1.0
65,865 - +0.5
65,866 + -0.2
65,946 - MMP_RS00295 0.17 +0.4
66,252 - MMP_RS00295 0.84 +0.6
66,320 - -5.8
66,320 - -5.2
66,713 + MMP_RS00300 0.83 -5.3
66,841 - -3.4
66,841 - -4.5
66,843 - -3.1
66,888 - MMP_RS00305 0.23 -2.5
66,889 + MMP_RS00305 0.23 -4.5
66,897 + MMP_RS00305 0.26 -3.3
66,972 + MMP_RS00305 0.52 -3.9
66,975 + MMP_RS00305 0.53 -3.3
67,115 - +0.6
67,115 - +0.4
67,152 - +0.3
67,162 - -0.3
67,163 + -0.3
67,174 + -0.4
67,269 + MMP_RS00310 0.17 -1.0
67,295 - MMP_RS00310 0.20 -0.6
67,297 - MMP_RS00310 0.20 -0.7
67,369 - MMP_RS00310 0.28 -0.0
67,370 + MMP_RS00310 0.28 -1.1
67,439 + MMP_RS00310 0.36 -1.8
67,476 - MMP_RS00310 0.40 -1.1
67,476 - MMP_RS00310 0.40 -1.8
67,476 - MMP_RS00310 0.40 -0.4
67,476 - MMP_RS00310 0.40 -0.3
67,476 - MMP_RS00310 0.40 -0.3
67,477 + MMP_RS00310 0.40 -0.7
67,478 - MMP_RS00310 0.40 -0.1
67,478 - MMP_RS00310 0.40 -0.6
67,478 - MMP_RS00310 0.40 -0.7
67,479 + MMP_RS00310 0.40 +0.8
67,479 + MMP_RS00310 0.40 -0.2
67,479 + MMP_RS00310 0.40 -0.2
67,496 + MMP_RS00310 0.42 -3.5
67,544 + MMP_RS00310 0.47 -0.7
67,568 + MMP_RS00310 0.50 -2.1
67,568 + MMP_RS00310 0.50 -2.0
67,569 - MMP_RS00310 0.50 -1.8
67,570 + MMP_RS00310 0.50 -1.8
67,570 + MMP_RS00310 0.50 -2.3
67,815 + MMP_RS00310 0.77 -2.1
67,834 + MMP_RS00310 0.79 -1.9
67,883 + MMP_RS00310 0.84 -2.8
67,996 - -1.9
68,011 - -1.5
68,011 - -1.6
68,017 + -2.6
68,017 + -1.8
68,026 + -2.6
68,049 - -1.9
68,060 - -2.2
68,074 - -2.5
68,074 - -1.7
68,074 - -2.6
68,074 - -1.9
68,075 + -2.4
68,076 - -2.2
68,076 - -0.4
68,076 - -0.6
68,076 - +0.1
68,077 + -1.7
68,079 + -0.4
68,099 - -0.7
68,103 + -0.6
68,109 + -0.2

Or see this region's nucleotide sequence