Experiment: L-Fucose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06205 and HMPREF1058_RS06200 are separated by 204 nucleotides HMPREF1058_RS06200 and HMPREF1058_RS06195 are separated by 64 nucleotides HMPREF1058_RS06195 and HMPREF1058_RS06190 are separated by 107 nucleotides
HMPREF1058_RS06205: HMPREF1058_RS06205 - glycosyltransferase, at 535,663 to 536,820
_RS06205
HMPREF1058_RS06200: HMPREF1058_RS06200 - hypothetical protein, at 537,025 to 537,531
_RS06200
HMPREF1058_RS06195: HMPREF1058_RS06195 - diaminopimelate decarboxylase, at 537,596 to 538,756
_RS06195
HMPREF1058_RS06190: HMPREF1058_RS06190 - aspartate kinase, at 538,864 to 540,183
_RS06190
Position (kb) 537
538
539 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 536.687 kb on - strand, within HMPREF1058_RS06205 at 536.687 kb on - strand, within HMPREF1058_RS06205 at 536.687 kb on - strand, within HMPREF1058_RS06205 at 536.687 kb on - strand, within HMPREF1058_RS06205 at 536.699 kb on + strand, within HMPREF1058_RS06205 at 536.700 kb on - strand, within HMPREF1058_RS06205 at 536.724 kb on - strand at 536.733 kb on + strand at 536.734 kb on - strand at 536.735 kb on + strand at 536.737 kb on + strand at 536.737 kb on + strand at 536.800 kb on - strand at 536.850 kb on + strand at 536.961 kb on + strand at 537.022 kb on - strand at 537.065 kb on + strand at 537.079 kb on - strand, within HMPREF1058_RS06200 at 537.159 kb on + strand, within HMPREF1058_RS06200 at 537.219 kb on + strand, within HMPREF1058_RS06200 at 537.235 kb on - strand, within HMPREF1058_RS06200 at 537.235 kb on - strand, within HMPREF1058_RS06200 at 537.239 kb on - strand, within HMPREF1058_RS06200 at 537.239 kb on - strand, within HMPREF1058_RS06200 at 537.269 kb on - strand, within HMPREF1058_RS06200 at 537.358 kb on - strand, within HMPREF1058_RS06200 at 537.366 kb on - strand, within HMPREF1058_RS06200 at 537.366 kb on - strand, within HMPREF1058_RS06200 at 537.368 kb on + strand, within HMPREF1058_RS06200 at 537.398 kb on - strand, within HMPREF1058_RS06200 at 537.414 kb on - strand, within HMPREF1058_RS06200 at 537.419 kb on + strand, within HMPREF1058_RS06200 at 537.451 kb on - strand, within HMPREF1058_RS06200 at 537.525 kb on + strand at 537.550 kb on - strand at 537.550 kb on - strand at 537.574 kb on + strand at 537.598 kb on - strand at 537.670 kb on - strand at 537.670 kb on - strand at 537.741 kb on - strand, within HMPREF1058_RS06195 at 537.805 kb on + strand, within HMPREF1058_RS06195 at 537.870 kb on - strand, within HMPREF1058_RS06195 at 537.873 kb on - strand, within HMPREF1058_RS06195 at 537.907 kb on - strand, within HMPREF1058_RS06195 at 537.945 kb on - strand, within HMPREF1058_RS06195 at 537.968 kb on + strand, within HMPREF1058_RS06195 at 538.006 kb on - strand, within HMPREF1058_RS06195 at 538.083 kb on - strand, within HMPREF1058_RS06195 at 538.090 kb on + strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.117 kb on - strand, within HMPREF1058_RS06195 at 538.157 kb on + strand, within HMPREF1058_RS06195 at 538.171 kb on + strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.306 kb on + strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.419 kb on - strand, within HMPREF1058_RS06195 at 538.475 kb on - strand, within HMPREF1058_RS06195 at 538.478 kb on + strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.699 kb on - strand at 538.702 kb on - strand at 538.761 kb on + strand at 538.879 kb on + strand at 538.941 kb on + strand at 538.946 kb on + strand at 538.971 kb on + strand at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.212 kb on + strand, within HMPREF1058_RS06190 at 539.358 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.409 kb on + strand, within HMPREF1058_RS06190 at 539.410 kb on - strand, within HMPREF1058_RS06190 at 539.526 kb on + strand, within HMPREF1058_RS06190 at 539.527 kb on - strand, within HMPREF1058_RS06190 at 539.615 kb on - strand, within HMPREF1058_RS06190 at 539.710 kb on - strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose 20 mM (C) remove 536,687 - HMPREF1058_RS06205 0.88 +0.5 536,687 - HMPREF1058_RS06205 0.88 -0.7 536,687 - HMPREF1058_RS06205 0.88 +0.3 536,687 - HMPREF1058_RS06205 0.88 -0.0 536,699 + HMPREF1058_RS06205 0.89 +1.7 536,700 - HMPREF1058_RS06205 0.90 -0.1 536,724 - -1.4 536,733 + -0.0 536,734 - +0.2 536,735 + -0.0 536,737 + +0.6 536,737 + -0.3 536,800 - +0.9 536,850 + +0.1 536,961 + -0.9 537,022 - -0.1 537,065 + -1.5 537,079 - HMPREF1058_RS06200 0.11 +0.2 537,159 + HMPREF1058_RS06200 0.26 -0.5 537,219 + HMPREF1058_RS06200 0.38 -0.5 537,235 - HMPREF1058_RS06200 0.41 -0.9 537,235 - HMPREF1058_RS06200 0.41 +0.3 537,239 - HMPREF1058_RS06200 0.42 -1.7 537,239 - HMPREF1058_RS06200 0.42 +0.9 537,269 - HMPREF1058_RS06200 0.48 +0.2 537,358 - HMPREF1058_RS06200 0.66 -1.5 537,366 - HMPREF1058_RS06200 0.67 +1.1 537,366 - HMPREF1058_RS06200 0.67 +0.7 537,368 + HMPREF1058_RS06200 0.68 -0.1 537,398 - HMPREF1058_RS06200 0.74 +0.4 537,414 - HMPREF1058_RS06200 0.77 -0.8 537,419 + HMPREF1058_RS06200 0.78 -1.1 537,451 - HMPREF1058_RS06200 0.84 +0.1 537,525 + -1.0 537,550 - +0.4 537,550 - -0.7 537,574 + +0.7 537,598 - +0.2 537,670 - -4.6 537,670 - -3.4 537,741 - HMPREF1058_RS06195 0.12 -2.2 537,805 + HMPREF1058_RS06195 0.18 -2.6 537,870 - HMPREF1058_RS06195 0.24 -5.6 537,873 - HMPREF1058_RS06195 0.24 -4.9 537,907 - HMPREF1058_RS06195 0.27 -0.7 537,945 - HMPREF1058_RS06195 0.30 -0.6 537,968 + HMPREF1058_RS06195 0.32 -2.2 538,006 - HMPREF1058_RS06195 0.35 -3.5 538,083 - HMPREF1058_RS06195 0.42 -5.4 538,090 + HMPREF1058_RS06195 0.43 -3.4 538,091 - HMPREF1058_RS06195 0.43 -2.9 538,091 - HMPREF1058_RS06195 0.43 -3.9 538,091 - HMPREF1058_RS06195 0.43 -4.2 538,117 - HMPREF1058_RS06195 0.45 -2.0 538,157 + HMPREF1058_RS06195 0.48 -2.4 538,171 + HMPREF1058_RS06195 0.50 -2.2 538,203 - HMPREF1058_RS06195 0.52 -2.6 538,203 - HMPREF1058_RS06195 0.52 -2.7 538,306 + HMPREF1058_RS06195 0.61 -1.7 538,383 - HMPREF1058_RS06195 0.68 -3.1 538,383 - HMPREF1058_RS06195 0.68 -5.9 538,419 - HMPREF1058_RS06195 0.71 -4.1 538,475 - HMPREF1058_RS06195 0.76 -2.2 538,478 + HMPREF1058_RS06195 0.76 -3.9 538,489 - HMPREF1058_RS06195 0.77 -1.0 538,489 - HMPREF1058_RS06195 0.77 -3.2 538,489 - HMPREF1058_RS06195 0.77 -2.4 538,548 - HMPREF1058_RS06195 0.82 -2.9 538,548 - HMPREF1058_RS06195 0.82 -1.6 538,699 - -2.4 538,702 - -4.7 538,761 + -1.9 538,879 + -4.6 538,941 + -2.4 538,946 + -4.1 538,971 + -4.0 539,058 + HMPREF1058_RS06190 0.15 -2.8 539,058 + HMPREF1058_RS06190 0.15 -2.8 539,090 + HMPREF1058_RS06190 0.17 -4.6 539,090 + HMPREF1058_RS06190 0.17 -2.4 539,212 + HMPREF1058_RS06190 0.26 -0.7 539,358 + HMPREF1058_RS06190 0.37 -4.8 539,387 + HMPREF1058_RS06190 0.40 -3.3 539,387 + HMPREF1058_RS06190 0.40 -2.1 539,409 + HMPREF1058_RS06190 0.41 -2.8 539,410 - HMPREF1058_RS06190 0.41 -0.6 539,526 + HMPREF1058_RS06190 0.50 -3.6 539,527 - HMPREF1058_RS06190 0.50 -1.4 539,615 - HMPREF1058_RS06190 0.57 -2.1 539,710 - HMPREF1058_RS06190 0.64 -1.3 539,711 + HMPREF1058_RS06190 0.64 -1.7 539,711 + HMPREF1058_RS06190 0.64 -1.2
Or see this region's nucleotide sequence