Strain Fitness in Rahnella sp. WP5 around EX31_RS17690

Experiment: Ammonium chloride (N); RCH2 media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS17685 and EX31_RS17690 are separated by 299 nucleotidesEX31_RS17690 and EX31_RS17695 are separated by 94 nucleotidesEX31_RS17695 and EX31_RS17700 are separated by 111 nucleotides EX31_RS17685: EX31_RS17685 - multidrug effflux MFS transporter, at 87,274 to 88,536 _RS17685 EX31_RS17690: EX31_RS17690 - levansucrase, at 88,836 to 90,083 _RS17690 EX31_RS17695: EX31_RS17695 - alpha/beta hydrolase, at 90,178 to 90,966 _RS17695 EX31_RS17700: EX31_RS17700 - efflux RND transporter permease subunit, at 91,078 to 94,152 _RS17700 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 87.870 kb on + strand, within EX31_RS17685at 87.871 kb on - strand, within EX31_RS17685at 87.948 kb on + strand, within EX31_RS17685at 87.948 kb on + strand, within EX31_RS17685at 87.984 kb on + strand, within EX31_RS17685at 87.984 kb on + strand, within EX31_RS17685at 87.984 kb on + strand, within EX31_RS17685at 87.984 kb on + strand, within EX31_RS17685at 87.984 kb on + strand, within EX31_RS17685at 87.985 kb on - strand, within EX31_RS17685at 87.985 kb on - strand, within EX31_RS17685at 87.985 kb on - strand, within EX31_RS17685at 88.007 kb on - strand, within EX31_RS17685at 88.007 kb on - strand, within EX31_RS17685at 88.020 kb on + strand, within EX31_RS17685at 88.025 kb on - strand, within EX31_RS17685at 88.090 kb on + strand, within EX31_RS17685at 88.090 kb on + strand, within EX31_RS17685at 88.091 kb on - strand, within EX31_RS17685at 88.091 kb on - strand, within EX31_RS17685at 88.091 kb on - strand, within EX31_RS17685at 88.091 kb on - strand, within EX31_RS17685at 88.093 kb on - strand, within EX31_RS17685at 88.093 kb on - strand, within EX31_RS17685at 88.110 kb on + strand, within EX31_RS17685at 88.111 kb on - strand, within EX31_RS17685at 88.111 kb on - strand, within EX31_RS17685at 88.113 kb on + strand, within EX31_RS17685at 88.114 kb on - strand, within EX31_RS17685at 88.130 kb on + strand, within EX31_RS17685at 88.159 kb on + strand, within EX31_RS17685at 88.160 kb on - strand, within EX31_RS17685at 88.214 kb on - strand, within EX31_RS17685at 88.266 kb on + strand, within EX31_RS17685at 88.374 kb on + strand, within EX31_RS17685at 88.374 kb on + strand, within EX31_RS17685at 88.461 kb on - strandat 88.461 kb on - strandat 88.461 kb on - strandat 88.519 kb on - strandat 88.519 kb on - strandat 88.730 kb on - strandat 88.808 kb on - strandat 88.853 kb on + strandat 88.946 kb on + strandat 89.054 kb on + strand, within EX31_RS17690at 89.063 kb on + strand, within EX31_RS17690at 89.064 kb on - strand, within EX31_RS17690at 89.074 kb on - strand, within EX31_RS17690at 89.102 kb on + strand, within EX31_RS17690at 89.275 kb on - strand, within EX31_RS17690at 89.277 kb on + strand, within EX31_RS17690at 89.277 kb on + strand, within EX31_RS17690at 89.278 kb on - strand, within EX31_RS17690at 89.278 kb on - strand, within EX31_RS17690at 89.279 kb on + strand, within EX31_RS17690at 89.279 kb on + strand, within EX31_RS17690at 89.280 kb on - strand, within EX31_RS17690at 89.372 kb on + strand, within EX31_RS17690at 89.401 kb on - strand, within EX31_RS17690at 89.401 kb on - strand, within EX31_RS17690at 89.481 kb on + strand, within EX31_RS17690at 89.481 kb on + strand, within EX31_RS17690at 89.481 kb on + strand, within EX31_RS17690at 89.482 kb on - strand, within EX31_RS17690at 89.498 kb on + strand, within EX31_RS17690at 89.603 kb on + strand, within EX31_RS17690at 89.610 kb on - strand, within EX31_RS17690at 89.728 kb on - strand, within EX31_RS17690at 89.728 kb on - strand, within EX31_RS17690at 89.728 kb on - strand, within EX31_RS17690at 89.728 kb on - strand, within EX31_RS17690at 89.730 kb on + strand, within EX31_RS17690at 89.750 kb on + strand, within EX31_RS17690at 89.750 kb on + strand, within EX31_RS17690at 89.750 kb on + strand, within EX31_RS17690at 89.750 kb on + strand, within EX31_RS17690at 89.751 kb on - strand, within EX31_RS17690at 89.751 kb on - strand, within EX31_RS17690at 89.751 kb on - strand, within EX31_RS17690at 89.760 kb on + strand, within EX31_RS17690at 89.761 kb on - strand, within EX31_RS17690at 89.761 kb on - strand, within EX31_RS17690at 89.793 kb on + strand, within EX31_RS17690at 89.861 kb on + strand, within EX31_RS17690at 89.861 kb on + strand, within EX31_RS17690at 89.889 kb on + strand, within EX31_RS17690at 89.903 kb on - strand, within EX31_RS17690at 89.930 kb on + strand, within EX31_RS17690at 89.930 kb on + strand, within EX31_RS17690at 89.931 kb on - strand, within EX31_RS17690at 89.936 kb on + strand, within EX31_RS17690at 89.967 kb on - strandat 89.967 kb on - strandat 89.987 kb on + strandat 90.025 kb on + strandat 90.026 kb on - strandat 90.026 kb on - strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.048 kb on + strandat 90.049 kb on - strandat 90.049 kb on - strandat 90.050 kb on + strandat 90.072 kb on - strandat 90.072 kb on - strandat 90.077 kb on - strandat 90.081 kb on + strandat 90.182 kb on - strandat 90.205 kb on + strandat 90.205 kb on + strandat 90.206 kb on - strandat 90.206 kb on - strandat 90.302 kb on - strand, within EX31_RS17695at 90.312 kb on - strand, within EX31_RS17695at 90.335 kb on + strand, within EX31_RS17695at 90.335 kb on + strand, within EX31_RS17695at 90.336 kb on - strand, within EX31_RS17695at 90.339 kb on + strand, within EX31_RS17695at 90.340 kb on - strand, within EX31_RS17695at 90.340 kb on - strand, within EX31_RS17695at 90.395 kb on + strand, within EX31_RS17695at 90.395 kb on + strand, within EX31_RS17695at 90.395 kb on + strand, within EX31_RS17695at 90.396 kb on - strand, within EX31_RS17695at 90.396 kb on - strand, within EX31_RS17695at 90.404 kb on + strand, within EX31_RS17695at 90.704 kb on - strand, within EX31_RS17695at 90.748 kb on + strand, within EX31_RS17695at 90.749 kb on - strand, within EX31_RS17695at 90.892 kb on - strandat 90.961 kb on - strandat 90.979 kb on + strandat 90.980 kb on - strandat 90.999 kb on + strandat 90.999 kb on + strandat 90.999 kb on + strandat 90.999 kb on + strandat 90.999 kb on + strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.000 kb on - strandat 91.061 kb on + strandat 91.062 kb on - strandat 91.062 kb on - strandat 91.062 kb on - strandat 91.062 kb on - strandat 91.062 kb on - strandat 91.079 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
remove
87,870 + EX31_RS17685 0.47 +0.4
87,871 - EX31_RS17685 0.47 -0.4
87,948 + EX31_RS17685 0.53 +1.0
87,948 + EX31_RS17685 0.53 -2.1
87,984 + EX31_RS17685 0.56 -1.3
87,984 + EX31_RS17685 0.56 +1.7
87,984 + EX31_RS17685 0.56 +1.7
87,984 + EX31_RS17685 0.56 +0.5
87,984 + EX31_RS17685 0.56 -0.1
87,985 - EX31_RS17685 0.56 -1.9
87,985 - EX31_RS17685 0.56 -0.4
87,985 - EX31_RS17685 0.56 +1.2
88,007 - EX31_RS17685 0.58 +1.7
88,007 - EX31_RS17685 0.58 -0.0
88,020 + EX31_RS17685 0.59 +2.0
88,025 - EX31_RS17685 0.59 -0.3
88,090 + EX31_RS17685 0.65 -1.4
88,090 + EX31_RS17685 0.65 -0.5
88,091 - EX31_RS17685 0.65 +1.1
88,091 - EX31_RS17685 0.65 +1.4
88,091 - EX31_RS17685 0.65 +0.5
88,091 - EX31_RS17685 0.65 +0.5
88,093 - EX31_RS17685 0.65 +0.7
88,093 - EX31_RS17685 0.65 +0.7
88,110 + EX31_RS17685 0.66 +1.1
88,111 - EX31_RS17685 0.66 +4.5
88,111 - EX31_RS17685 0.66 +1.6
88,113 + EX31_RS17685 0.66 +1.5
88,114 - EX31_RS17685 0.67 +0.5
88,130 + EX31_RS17685 0.68 -2.1
88,159 + EX31_RS17685 0.70 -0.4
88,160 - EX31_RS17685 0.70 +0.2
88,214 - EX31_RS17685 0.74 -0.7
88,266 + EX31_RS17685 0.79 +1.1
88,374 + EX31_RS17685 0.87 +0.1
88,374 + EX31_RS17685 0.87 +0.7
88,461 - -0.1
88,461 - -1.9
88,461 - +1.6
88,519 - +1.2
88,519 - +0.1
88,730 - -0.3
88,808 - -0.3
88,853 + -0.1
88,946 + +1.2
89,054 + EX31_RS17690 0.17 +0.8
89,063 + EX31_RS17690 0.18 -0.9
89,064 - EX31_RS17690 0.18 +0.7
89,074 - EX31_RS17690 0.19 +0.3
89,102 + EX31_RS17690 0.21 +1.0
89,275 - EX31_RS17690 0.35 +1.5
89,277 + EX31_RS17690 0.35 +1.4
89,277 + EX31_RS17690 0.35 +0.1
89,278 - EX31_RS17690 0.35 +0.1
89,278 - EX31_RS17690 0.35 -1.7
89,279 + EX31_RS17690 0.35 +0.2
89,279 + EX31_RS17690 0.35 +0.1
89,280 - EX31_RS17690 0.36 +0.4
89,372 + EX31_RS17690 0.43 -0.7
89,401 - EX31_RS17690 0.45 +1.0
89,401 - EX31_RS17690 0.45 +0.9
89,481 + EX31_RS17690 0.52 -0.7
89,481 + EX31_RS17690 0.52 -0.6
89,481 + EX31_RS17690 0.52 +0.6
89,482 - EX31_RS17690 0.52 +0.4
89,498 + EX31_RS17690 0.53 -1.3
89,603 + EX31_RS17690 0.61 +1.1
89,610 - EX31_RS17690 0.62 +1.7
89,728 - EX31_RS17690 0.71 +2.5
89,728 - EX31_RS17690 0.71 +1.7
89,728 - EX31_RS17690 0.71 -1.2
89,728 - EX31_RS17690 0.71 -0.1
89,730 + EX31_RS17690 0.72 -0.4
89,750 + EX31_RS17690 0.73 -0.3
89,750 + EX31_RS17690 0.73 -2.5
89,750 + EX31_RS17690 0.73 -0.2
89,750 + EX31_RS17690 0.73 +1.1
89,751 - EX31_RS17690 0.73 +1.0
89,751 - EX31_RS17690 0.73 +0.9
89,751 - EX31_RS17690 0.73 -1.8
89,760 + EX31_RS17690 0.74 +3.3
89,761 - EX31_RS17690 0.74 +0.4
89,761 - EX31_RS17690 0.74 +1.0
89,793 + EX31_RS17690 0.77 +2.3
89,861 + EX31_RS17690 0.82 +1.2
89,861 + EX31_RS17690 0.82 +1.2
89,889 + EX31_RS17690 0.84 +2.0
89,903 - EX31_RS17690 0.85 +1.0
89,930 + EX31_RS17690 0.88 +0.4
89,930 + EX31_RS17690 0.88 +1.1
89,931 - EX31_RS17690 0.88 -0.9
89,936 + EX31_RS17690 0.88 +0.9
89,967 - -0.7
89,967 - +0.8
89,987 + -0.6
90,025 + +0.1
90,026 - -0.3
90,026 - +1.1
90,048 + +0.3
90,048 + +1.5
90,048 + +0.7
90,048 + +0.4
90,048 + -0.6
90,048 + +0.4
90,048 + +0.1
90,048 + +0.9
90,048 + -1.1
90,048 + +0.1
90,048 + +0.3
90,049 - -1.0
90,049 - +0.6
90,050 + +0.2
90,072 - +1.7
90,072 - +0.5
90,077 - -0.2
90,081 + +2.3
90,182 - +0.4
90,205 + +0.1
90,205 + +2.7
90,206 - -0.3
90,206 - +2.2
90,302 - EX31_RS17695 0.16 +2.7
90,312 - EX31_RS17695 0.17 -0.3
90,335 + EX31_RS17695 0.20 -0.1
90,335 + EX31_RS17695 0.20 +1.7
90,336 - EX31_RS17695 0.20 -0.3
90,339 + EX31_RS17695 0.20 -1.7
90,340 - EX31_RS17695 0.21 +0.6
90,340 - EX31_RS17695 0.21 -0.7
90,395 + EX31_RS17695 0.28 +1.2
90,395 + EX31_RS17695 0.28 -0.3
90,395 + EX31_RS17695 0.28 +1.5
90,396 - EX31_RS17695 0.28 +0.5
90,396 - EX31_RS17695 0.28 -0.8
90,404 + EX31_RS17695 0.29 -0.3
90,704 - EX31_RS17695 0.67 +1.5
90,748 + EX31_RS17695 0.72 +0.3
90,749 - EX31_RS17695 0.72 +1.3
90,892 - +0.9
90,961 - -0.9
90,979 + -0.8
90,980 - +0.7
90,999 + +0.4
90,999 + -0.1
90,999 + +2.2
90,999 + +0.9
90,999 + +1.7
91,000 - -1.3
91,000 - +1.3
91,000 - +1.3
91,000 - -0.2
91,000 - -0.3
91,000 - +1.3
91,000 - +0.2
91,000 - +0.8
91,000 - -1.9
91,000 - +1.1
91,061 + +0.1
91,062 - +0.7
91,062 - -0.8
91,062 - +0.9
91,062 - -1.2
91,062 - +0.5
91,079 + +0.1

Or see this region's nucleotide sequence