Strain Fitness in Rahnella sp. WP5 around EX31_RS14335

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14325 and EX31_RS14330 are separated by 37 nucleotidesEX31_RS14330 and EX31_RS14335 are separated by 52 nucleotidesEX31_RS14335 and EX31_RS14340 are separated by 87 nucleotides EX31_RS14325: EX31_RS14325 - envelope stress sensor histidine kinase CpxA, at 46,584 to 47,954 _RS14325 EX31_RS14330: EX31_RS14330 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 47,992 to 48,465 _RS14330 EX31_RS14335: EX31_RS14335 - serine O-acetyltransferase, at 48,518 to 49,339 _RS14335 EX31_RS14340: EX31_RS14340 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 49,427 to 50,446 _RS14340 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.727 kb on - strand, within EX31_RS14325at 47.887 kb on + strandat 47.888 kb on - strandat 47.888 kb on - strandat 47.963 kb on + strandat 47.964 kb on - strandat 47.978 kb on + strandat 47.979 kb on - strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.998 kb on - strandat 47.998 kb on - strandat 47.998 kb on - strandat 47.998 kb on - strandat 48.008 kb on + strandat 48.008 kb on + strandat 48.009 kb on - strandat 48.143 kb on - strand, within EX31_RS14330at 48.143 kb on - strand, within EX31_RS14330at 48.159 kb on + strand, within EX31_RS14330at 48.160 kb on - strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.262 kb on + strand, within EX31_RS14330at 48.262 kb on + strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.318 kb on + strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.360 kb on + strand, within EX31_RS14330at 48.361 kb on - strand, within EX31_RS14330at 48.415 kb on + strand, within EX31_RS14330at 48.415 kb on + strand, within EX31_RS14330at 48.416 kb on - strand, within EX31_RS14330at 48.416 kb on - strand, within EX31_RS14330at 48.464 kb on - strandat 48.553 kb on + strandat 48.553 kb on + strandat 48.554 kb on - strandat 48.574 kb on + strandat 48.575 kb on - strandat 48.707 kb on - strand, within EX31_RS14335at 48.707 kb on - strand, within EX31_RS14335at 48.757 kb on + strand, within EX31_RS14335at 48.788 kb on - strand, within EX31_RS14335at 48.819 kb on - strand, within EX31_RS14335at 48.910 kb on + strand, within EX31_RS14335at 48.911 kb on - strand, within EX31_RS14335at 48.914 kb on + strand, within EX31_RS14335at 48.995 kb on - strand, within EX31_RS14335at 49.048 kb on - strand, within EX31_RS14335at 49.200 kb on + strand, within EX31_RS14335at 49.200 kb on + strand, within EX31_RS14335at 49.201 kb on - strand, within EX31_RS14335at 49.300 kb on + strandat 49.300 kb on + strandat 49.301 kb on - strandat 49.306 kb on + strandat 49.322 kb on + strandat 49.323 kb on - strandat 49.396 kb on - strandat 49.550 kb on - strand, within EX31_RS14340at 49.727 kb on - strand, within EX31_RS14340at 50.187 kb on - strand, within EX31_RS14340at 50.216 kb on - strand, within EX31_RS14340at 50.316 kb on - strand, within EX31_RS14340

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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47,727 - EX31_RS14325 0.83 -0.2
47,887 + +1.1
47,888 - -0.3
47,888 - +1.0
47,963 + -1.6
47,964 - +0.3
47,978 + -1.0
47,979 - +0.1
47,997 + +0.4
47,997 + -0.2
47,997 + +0.1
47,997 + +0.6
47,997 + +0.2
47,998 - -0.3
47,998 - -1.3
47,998 - +0.2
47,998 - +0.7
48,008 + -0.2
48,008 + +0.7
48,009 - -0.3
48,143 - EX31_RS14330 0.32 -0.2
48,143 - EX31_RS14330 0.32 +0.1
48,159 + EX31_RS14330 0.35 -0.0
48,160 - EX31_RS14330 0.35 +0.9
48,161 + EX31_RS14330 0.36 +1.0
48,161 + EX31_RS14330 0.36 +0.3
48,161 + EX31_RS14330 0.36 -0.3
48,161 + EX31_RS14330 0.36 +1.6
48,161 + EX31_RS14330 0.36 +0.6
48,161 + EX31_RS14330 0.36 +1.0
48,161 + EX31_RS14330 0.36 +1.3
48,161 + EX31_RS14330 0.36 +0.2
48,161 + EX31_RS14330 0.36 +1.0
48,161 + EX31_RS14330 0.36 +1.3
48,161 + EX31_RS14330 0.36 +1.2
48,161 + EX31_RS14330 0.36 +0.4
48,161 + EX31_RS14330 0.36 +0.0
48,161 + EX31_RS14330 0.36 +1.4
48,161 + EX31_RS14330 0.36 -0.6
48,161 + EX31_RS14330 0.36 +0.2
48,161 + EX31_RS14330 0.36 +0.3
48,161 + EX31_RS14330 0.36 +0.3
48,161 + EX31_RS14330 0.36 +0.5
48,162 - EX31_RS14330 0.36 +0.8
48,162 - EX31_RS14330 0.36 +1.2
48,162 - EX31_RS14330 0.36 -0.4
48,162 - EX31_RS14330 0.36 +0.7
48,162 - EX31_RS14330 0.36 -0.7
48,162 - EX31_RS14330 0.36 -0.1
48,162 - EX31_RS14330 0.36 -1.5
48,162 - EX31_RS14330 0.36 +0.8
48,162 - EX31_RS14330 0.36 -0.7
48,162 - EX31_RS14330 0.36 +0.2
48,162 - EX31_RS14330 0.36 -1.1
48,162 - EX31_RS14330 0.36 -0.9
48,162 - EX31_RS14330 0.36 +0.7
48,162 - EX31_RS14330 0.36 -0.0
48,178 + EX31_RS14330 0.39 -0.6
48,178 + EX31_RS14330 0.39 +0.5
48,178 + EX31_RS14330 0.39 -0.4
48,178 + EX31_RS14330 0.39 +0.8
48,179 - EX31_RS14330 0.39 +1.0
48,179 - EX31_RS14330 0.39 +0.6
48,179 - EX31_RS14330 0.39 +0.8
48,262 + EX31_RS14330 0.57 -0.3
48,262 + EX31_RS14330 0.57 +1.3
48,263 - EX31_RS14330 0.57 -0.2
48,263 - EX31_RS14330 0.57 +0.6
48,263 - EX31_RS14330 0.57 -0.6
48,318 + EX31_RS14330 0.69 -0.4
48,319 - EX31_RS14330 0.69 +0.4
48,319 - EX31_RS14330 0.69 +0.4
48,319 - EX31_RS14330 0.69 +0.2
48,319 - EX31_RS14330 0.69 +0.1
48,319 - EX31_RS14330 0.69 +0.8
48,360 + EX31_RS14330 0.78 -1.0
48,361 - EX31_RS14330 0.78 -1.0
48,415 + EX31_RS14330 0.89 -0.0
48,415 + EX31_RS14330 0.89 +0.3
48,416 - EX31_RS14330 0.89 -0.2
48,416 - EX31_RS14330 0.89 +1.0
48,464 - -2.2
48,553 + -3.6
48,553 + -2.9
48,554 - -0.9
48,574 + -1.8
48,575 - -0.0
48,707 - EX31_RS14335 0.23 +1.0
48,707 - EX31_RS14335 0.23 -0.6
48,757 + EX31_RS14335 0.29 +1.5
48,788 - EX31_RS14335 0.33 +0.5
48,819 - EX31_RS14335 0.37 -0.3
48,910 + EX31_RS14335 0.48 +0.2
48,911 - EX31_RS14335 0.48 +0.2
48,914 + EX31_RS14335 0.48 -0.8
48,995 - EX31_RS14335 0.58 -1.8
49,048 - EX31_RS14335 0.64 -2.1
49,200 + EX31_RS14335 0.83 -0.5
49,200 + EX31_RS14335 0.83 +0.5
49,201 - EX31_RS14335 0.83 -1.5
49,300 + +2.0
49,300 + -3.0
49,301 - -0.0
49,306 + -2.8
49,322 + -1.8
49,323 - -0.6
49,396 - +0.3
49,550 - EX31_RS14340 0.12 +0.5
49,727 - EX31_RS14340 0.29 -0.5
50,187 - EX31_RS14340 0.75 -0.0
50,216 - EX31_RS14340 0.77 -0.9
50,316 - EX31_RS14340 0.87 -1.2

Or see this region's nucleotide sequence