Strain Fitness in Rahnella sp. WP5 around EX31_RS13710

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13710 and EX31_RS13715 are separated by 93 nucleotides EX31_RS13710: EX31_RS13710 - serine acetyltransferase, at 407 to 961 _RS13710 EX31_RS13715: EX31_RS13715 - diguanylate cyclase, at 1,055 to 2,950 _RS13715 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.353 kb on + strandat 0.354 kb on - strandat 0.354 kb on - strandat 0.371 kb on + strandat 0.372 kb on - strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.438 kb on + strandat 0.438 kb on + strandat 0.513 kb on + strand, within EX31_RS13710at 0.514 kb on - strand, within EX31_RS13710at 0.560 kb on + strand, within EX31_RS13710at 0.560 kb on + strand, within EX31_RS13710at 0.561 kb on - strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.564 kb on + strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.565 kb on - strand, within EX31_RS13710at 0.566 kb on + strand, within EX31_RS13710at 0.566 kb on + strand, within EX31_RS13710at 0.611 kb on - strand, within EX31_RS13710at 0.611 kb on - strand, within EX31_RS13710at 0.611 kb on - strand, within EX31_RS13710at 0.615 kb on - strand, within EX31_RS13710at 0.791 kb on - strand, within EX31_RS13710at 0.791 kb on - strand, within EX31_RS13710at 0.896 kb on - strand, within EX31_RS13710at 0.923 kb on + strandat 0.945 kb on + strandat 1.062 kb on - strandat 1.065 kb on + strandat 1.068 kb on + strandat 1.068 kb on + strandat 1.098 kb on + strandat 1.099 kb on - strandat 1.271 kb on - strand, within EX31_RS13715at 1.298 kb on - strand, within EX31_RS13715at 1.328 kb on - strand, within EX31_RS13715at 1.353 kb on - strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.357 kb on + strand, within EX31_RS13715at 1.358 kb on - strand, within EX31_RS13715at 1.358 kb on - strand, within EX31_RS13715at 1.358 kb on - strand, within EX31_RS13715at 1.358 kb on - strand, within EX31_RS13715at 1.358 kb on - strand, within EX31_RS13715at 1.379 kb on + strand, within EX31_RS13715at 1.401 kb on + strand, within EX31_RS13715at 1.402 kb on - strand, within EX31_RS13715at 1.413 kb on + strand, within EX31_RS13715at 1.414 kb on - strand, within EX31_RS13715at 1.420 kb on + strand, within EX31_RS13715at 1.421 kb on - strand, within EX31_RS13715at 1.427 kb on - strand, within EX31_RS13715at 1.611 kb on + strand, within EX31_RS13715at 1.701 kb on + strand, within EX31_RS13715at 1.706 kb on + strand, within EX31_RS13715at 1.707 kb on - strand, within EX31_RS13715at 1.756 kb on - strand, within EX31_RS13715at 1.756 kb on - strand, within EX31_RS13715at 1.770 kb on - strand, within EX31_RS13715at 1.851 kb on + strand, within EX31_RS13715

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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353 + +1.6
354 - +0.6
354 - +0.6
371 + +1.6
372 - +1.3
430 + +0.5
430 + -1.2
438 + -2.1
438 + +1.1
513 + EX31_RS13710 0.19 +0.6
514 - EX31_RS13710 0.19 -1.4
560 + EX31_RS13710 0.28 -0.9
560 + EX31_RS13710 0.28 +0.3
561 - EX31_RS13710 0.28 -0.1
564 + EX31_RS13710 0.28 +0.3
564 + EX31_RS13710 0.28 -0.7
564 + EX31_RS13710 0.28 -0.6
564 + EX31_RS13710 0.28 +1.4
564 + EX31_RS13710 0.28 -0.9
564 + EX31_RS13710 0.28 +0.6
565 - EX31_RS13710 0.28 +1.8
565 - EX31_RS13710 0.28 +0.1
565 - EX31_RS13710 0.28 -0.9
565 - EX31_RS13710 0.28 +0.1
565 - EX31_RS13710 0.28 +1.4
565 - EX31_RS13710 0.28 +0.2
565 - EX31_RS13710 0.28 -0.9
565 - EX31_RS13710 0.28 -0.2
565 - EX31_RS13710 0.28 -0.6
565 - EX31_RS13710 0.28 +1.5
565 - EX31_RS13710 0.28 -1.3
566 + EX31_RS13710 0.29 +1.0
566 + EX31_RS13710 0.29 -0.4
611 - EX31_RS13710 0.37 +2.3
611 - EX31_RS13710 0.37 +0.7
611 - EX31_RS13710 0.37 +1.3
615 - EX31_RS13710 0.37 -1.5
791 - EX31_RS13710 0.69 +0.4
791 - EX31_RS13710 0.69 -1.8
896 - EX31_RS13710 0.88 +0.3
923 + +0.1
945 + +0.1
1,062 - -0.7
1,065 + -1.2
1,068 + -0.4
1,068 + -0.5
1,098 + -0.4
1,099 - +0.6
1,271 - EX31_RS13715 0.11 -0.4
1,298 - EX31_RS13715 0.13 +1.0
1,328 - EX31_RS13715 0.14 +1.1
1,353 - EX31_RS13715 0.16 +0.3
1,357 + EX31_RS13715 0.16 -1.2
1,357 + EX31_RS13715 0.16 +2.0
1,357 + EX31_RS13715 0.16 +2.8
1,357 + EX31_RS13715 0.16 +1.6
1,357 + EX31_RS13715 0.16 -0.4
1,357 + EX31_RS13715 0.16 -2.9
1,358 - EX31_RS13715 0.16 +0.4
1,358 - EX31_RS13715 0.16 +0.4
1,358 - EX31_RS13715 0.16 +0.6
1,358 - EX31_RS13715 0.16 +1.4
1,358 - EX31_RS13715 0.16 +2.1
1,379 + EX31_RS13715 0.17 +0.4
1,401 + EX31_RS13715 0.18 -0.3
1,402 - EX31_RS13715 0.18 -0.6
1,413 + EX31_RS13715 0.19 -2.3
1,414 - EX31_RS13715 0.19 +2.6
1,420 + EX31_RS13715 0.19 -1.1
1,421 - EX31_RS13715 0.19 +0.1
1,427 - EX31_RS13715 0.20 +0.5
1,611 + EX31_RS13715 0.29 -0.6
1,701 + EX31_RS13715 0.34 +0.6
1,706 + EX31_RS13715 0.34 +0.4
1,707 - EX31_RS13715 0.34 -1.4
1,756 - EX31_RS13715 0.37 +0.1
1,756 - EX31_RS13715 0.37 -0.8
1,770 - EX31_RS13715 0.38 +0.4
1,851 + EX31_RS13715 0.42 +1.3

Or see this region's nucleotide sequence