Strain Fitness in Rahnella sp. WP5 around EX31_RS09060

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09055 and EX31_RS09060 are separated by 16 nucleotidesEX31_RS09060 and EX31_RS09065 are separated by 38 nucleotidesEX31_RS09065 and EX31_RS24950 are separated by 76 nucleotides EX31_RS09055: EX31_RS09055 - hypothetical protein, at 1 to 778 _RS09055 EX31_RS09060: EX31_RS09060 - fimbrial biogenesis outer membrane usher protein, at 795 to 3,449 _RS09060 EX31_RS09065: EX31_RS09065 - molecular chaperone, at 3,488 to 4,162 _RS09065 EX31_RS24950: EX31_RS24950 - type 1 fimbrial protein, at 4,239 to 4,778 _RS24950 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.493 kb on - strand, within EX31_RS09060at 1.576 kb on + strand, within EX31_RS09060at 1.577 kb on - strand, within EX31_RS09060at 1.628 kb on + strand, within EX31_RS09060at 1.628 kb on + strand, within EX31_RS09060at 1.629 kb on - strand, within EX31_RS09060at 1.629 kb on - strand, within EX31_RS09060at 1.629 kb on - strand, within EX31_RS09060at 1.642 kb on - strand, within EX31_RS09060at 1.642 kb on - strand, within EX31_RS09060at 1.642 kb on - strand, within EX31_RS09060at 1.678 kb on + strand, within EX31_RS09060at 1.678 kb on + strand, within EX31_RS09060at 1.679 kb on - strand, within EX31_RS09060at 1.684 kb on + strand, within EX31_RS09060at 1.685 kb on - strand, within EX31_RS09060at 1.696 kb on + strand, within EX31_RS09060at 1.734 kb on + strand, within EX31_RS09060at 1.735 kb on - strand, within EX31_RS09060at 1.737 kb on + strand, within EX31_RS09060at 1.789 kb on + strand, within EX31_RS09060at 1.790 kb on - strand, within EX31_RS09060at 1.802 kb on - strand, within EX31_RS09060at 1.864 kb on + strand, within EX31_RS09060at 1.864 kb on + strand, within EX31_RS09060at 1.865 kb on - strand, within EX31_RS09060at 1.865 kb on - strand, within EX31_RS09060at 1.906 kb on - strand, within EX31_RS09060at 1.906 kb on - strand, within EX31_RS09060at 1.925 kb on - strand, within EX31_RS09060at 1.925 kb on - strand, within EX31_RS09060at 1.964 kb on + strand, within EX31_RS09060at 1.964 kb on + strand, within EX31_RS09060at 1.993 kb on + strand, within EX31_RS09060at 1.994 kb on - strand, within EX31_RS09060at 1.994 kb on - strand, within EX31_RS09060at 2.005 kb on + strand, within EX31_RS09060at 2.091 kb on + strand, within EX31_RS09060at 2.091 kb on + strand, within EX31_RS09060at 2.091 kb on + strand, within EX31_RS09060at 2.126 kb on - strand, within EX31_RS09060at 2.137 kb on + strand, within EX31_RS09060at 2.162 kb on + strand, within EX31_RS09060at 2.162 kb on + strand, within EX31_RS09060at 2.179 kb on + strand, within EX31_RS09060at 2.236 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.827 kb on + strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.856 kb on - strand, within EX31_RS09060at 2.946 kb on + strand, within EX31_RS09060at 2.977 kb on + strand, within EX31_RS09060at 2.978 kb on - strand, within EX31_RS09060at 2.978 kb on - strand, within EX31_RS09060at 3.047 kb on + strand, within EX31_RS09060at 3.089 kb on - strand, within EX31_RS09060at 3.160 kb on + strand, within EX31_RS09060at 3.222 kb on - strandat 3.222 kb on - strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.310 kb on - strandat 3.315 kb on + strandat 3.535 kb on + strandat 3.572 kb on - strand, within EX31_RS09065at 3.720 kb on + strand, within EX31_RS09065at 3.791 kb on - strand, within EX31_RS09065at 3.791 kb on - strand, within EX31_RS09065at 3.852 kb on + strand, within EX31_RS09065at 3.898 kb on + strand, within EX31_RS09065at 3.898 kb on + strand, within EX31_RS09065at 3.899 kb on - strand, within EX31_RS09065at 4.001 kb on - strand, within EX31_RS09065at 4.005 kb on + strand, within EX31_RS09065at 4.066 kb on - strand, within EX31_RS09065at 4.069 kb on + strand, within EX31_RS09065at 4.069 kb on + strand, within EX31_RS09065at 4.333 kb on + strand, within EX31_RS24950

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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1,493 - EX31_RS09060 0.26 +2.9
1,576 + EX31_RS09060 0.29 +1.7
1,577 - EX31_RS09060 0.29 +0.2
1,628 + EX31_RS09060 0.31 +0.6
1,628 + EX31_RS09060 0.31 -0.0
1,629 - EX31_RS09060 0.31 -0.8
1,629 - EX31_RS09060 0.31 -0.1
1,629 - EX31_RS09060 0.31 +0.2
1,642 - EX31_RS09060 0.32 +0.8
1,642 - EX31_RS09060 0.32 +0.3
1,642 - EX31_RS09060 0.32 +2.0
1,678 + EX31_RS09060 0.33 -0.8
1,678 + EX31_RS09060 0.33 +1.1
1,679 - EX31_RS09060 0.33 +1.1
1,684 + EX31_RS09060 0.33 -0.9
1,685 - EX31_RS09060 0.34 +0.5
1,696 + EX31_RS09060 0.34 +0.2
1,734 + EX31_RS09060 0.35 -0.0
1,735 - EX31_RS09060 0.35 +0.6
1,737 + EX31_RS09060 0.35 -0.0
1,789 + EX31_RS09060 0.37 +0.4
1,790 - EX31_RS09060 0.37 +0.6
1,802 - EX31_RS09060 0.38 +1.0
1,864 + EX31_RS09060 0.40 -2.0
1,864 + EX31_RS09060 0.40 -1.2
1,865 - EX31_RS09060 0.40 +1.6
1,865 - EX31_RS09060 0.40 +1.6
1,906 - EX31_RS09060 0.42 +0.6
1,906 - EX31_RS09060 0.42 -0.2
1,925 - EX31_RS09060 0.43 +1.2
1,925 - EX31_RS09060 0.43 -0.4
1,964 + EX31_RS09060 0.44 -0.6
1,964 + EX31_RS09060 0.44 -0.2
1,993 + EX31_RS09060 0.45 +1.6
1,994 - EX31_RS09060 0.45 -1.2
1,994 - EX31_RS09060 0.45 +2.3
2,005 + EX31_RS09060 0.46 -1.2
2,091 + EX31_RS09060 0.49 -0.0
2,091 + EX31_RS09060 0.49 -0.0
2,091 + EX31_RS09060 0.49 +0.2
2,126 - EX31_RS09060 0.50 +0.6
2,137 + EX31_RS09060 0.51 -1.0
2,162 + EX31_RS09060 0.51 +1.2
2,162 + EX31_RS09060 0.51 +0.6
2,179 + EX31_RS09060 0.52 +0.8
2,236 + EX31_RS09060 0.54 +1.7
2,641 + EX31_RS09060 0.70 +0.2
2,641 + EX31_RS09060 0.70 +1.6
2,641 + EX31_RS09060 0.70 +0.9
2,641 + EX31_RS09060 0.70 +0.7
2,641 + EX31_RS09060 0.70 +1.6
2,641 + EX31_RS09060 0.70 +1.3
2,642 - EX31_RS09060 0.70 +1.3
2,642 - EX31_RS09060 0.70 +1.4
2,642 - EX31_RS09060 0.70 +0.6
2,642 - EX31_RS09060 0.70 +1.6
2,642 - EX31_RS09060 0.70 -1.8
2,642 - EX31_RS09060 0.70 +1.3
2,642 - EX31_RS09060 0.70 -2.0
2,827 + EX31_RS09060 0.77 +1.4
2,834 - EX31_RS09060 0.77 -0.2
2,834 - EX31_RS09060 0.77 +1.8
2,834 - EX31_RS09060 0.77 +1.8
2,834 - EX31_RS09060 0.77 +1.2
2,856 - EX31_RS09060 0.78 +0.2
2,946 + EX31_RS09060 0.81 +0.7
2,977 + EX31_RS09060 0.82 -1.0
2,978 - EX31_RS09060 0.82 +0.8
2,978 - EX31_RS09060 0.82 +0.5
3,047 + EX31_RS09060 0.85 -0.0
3,089 - EX31_RS09060 0.86 +1.3
3,160 + EX31_RS09060 0.89 +0.4
3,222 - +1.3
3,222 - +1.1
3,258 - +1.1
3,258 - -1.6
3,258 - +1.1
3,310 - +2.6
3,315 + -1.0
3,535 + -0.4
3,572 - EX31_RS09065 0.12 +2.1
3,720 + EX31_RS09065 0.34 +2.1
3,791 - EX31_RS09065 0.45 -1.0
3,791 - EX31_RS09065 0.45 +3.2
3,852 + EX31_RS09065 0.54 -0.8
3,898 + EX31_RS09065 0.61 +2.3
3,898 + EX31_RS09065 0.61 +0.2
3,899 - EX31_RS09065 0.61 +1.2
4,001 - EX31_RS09065 0.76 +0.2
4,005 + EX31_RS09065 0.77 +0.5
4,066 - EX31_RS09065 0.86 +1.1
4,069 + EX31_RS09065 0.86 +1.2
4,069 + EX31_RS09065 0.86 -1.2
4,333 + EX31_RS24950 0.17 -1.2

Or see this region's nucleotide sequence