Strain Fitness in Rahnella sp. WP5 around EX31_RS01410

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01400 and EX31_RS01405 are separated by 243 nucleotidesEX31_RS01405 and EX31_RS01410 are separated by 209 nucleotidesEX31_RS01410 and EX31_RS01415 are separated by 4 nucleotides EX31_RS01400: EX31_RS01400 - dihydrodipicolinate synthase family protein, at 312,063 to 312,953 _RS01400 EX31_RS01405: EX31_RS01405 - hypothetical protein, at 313,197 to 313,604 _RS01405 EX31_RS01410: EX31_RS01410 - hypothetical protein, at 313,814 to 315,163 _RS01410 EX31_RS01415: EX31_RS01415 - virulence factor SrfB, at 315,168 to 318,140 _RS01415 Position (kb) 313 314 315 316Strain fitness (log2 ratio) -2 -1 0 1 2at 312.920 kb on + strandat 312.941 kb on - strandat 312.981 kb on + strandat 312.981 kb on + strandat 313.003 kb on + strandat 313.115 kb on + strandat 313.116 kb on - strandat 313.196 kb on - strandat 313.204 kb on - strandat 313.256 kb on - strand, within EX31_RS01405at 313.282 kb on - strand, within EX31_RS01405at 313.296 kb on + strand, within EX31_RS01405at 313.296 kb on + strand, within EX31_RS01405at 313.334 kb on + strand, within EX31_RS01405at 313.371 kb on - strand, within EX31_RS01405at 313.371 kb on - strand, within EX31_RS01405at 313.373 kb on + strand, within EX31_RS01405at 313.373 kb on + strand, within EX31_RS01405at 313.374 kb on - strand, within EX31_RS01405at 313.433 kb on - strand, within EX31_RS01405at 313.445 kb on + strand, within EX31_RS01405at 313.545 kb on + strand, within EX31_RS01405at 313.546 kb on - strand, within EX31_RS01405at 313.546 kb on - strand, within EX31_RS01405at 313.571 kb on - strandat 313.710 kb on + strandat 313.733 kb on - strandat 313.798 kb on + strandat 313.798 kb on + strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.917 kb on + strandat 313.970 kb on - strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.291 kb on - strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.534 kb on + strand, within EX31_RS01410at 314.535 kb on - strand, within EX31_RS01410at 314.761 kb on - strand, within EX31_RS01410at 314.790 kb on + strand, within EX31_RS01410at 314.842 kb on + strand, within EX31_RS01410at 314.842 kb on + strand, within EX31_RS01410at 314.885 kb on - strand, within EX31_RS01410at 315.050 kb on + strandat 315.073 kb on + strandat 315.146 kb on - strandat 315.146 kb on - strandat 315.161 kb on + strandat 315.192 kb on - strandat 315.204 kb on - strandat 315.324 kb on + strandat 315.325 kb on - strandat 315.590 kb on - strand, within EX31_RS01415at 315.724 kb on + strand, within EX31_RS01415at 315.724 kb on + strand, within EX31_RS01415at 315.725 kb on - strand, within EX31_RS01415at 315.733 kb on + strand, within EX31_RS01415at 315.734 kb on - strand, within EX31_RS01415at 315.779 kb on + strand, within EX31_RS01415at 315.780 kb on - strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.782 kb on + strand, within EX31_RS01415at 315.783 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.820 kb on - strand, within EX31_RS01415at 315.875 kb on + strand, within EX31_RS01415at 315.932 kb on + strand, within EX31_RS01415at 315.932 kb on + strand, within EX31_RS01415at 316.041 kb on + strand, within EX31_RS01415at 316.134 kb on - strand, within EX31_RS01415

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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312,920 + -0.7
312,941 - +0.5
312,981 + +0.8
312,981 + +1.3
313,003 + +0.4
313,115 + -0.1
313,116 - -0.4
313,196 - +0.7
313,204 - +0.9
313,256 - EX31_RS01405 0.14 +1.4
313,282 - EX31_RS01405 0.21 +0.3
313,296 + EX31_RS01405 0.24 +1.8
313,296 + EX31_RS01405 0.24 +1.9
313,334 + EX31_RS01405 0.34 -0.8
313,371 - EX31_RS01405 0.43 +0.5
313,371 - EX31_RS01405 0.43 -0.1
313,373 + EX31_RS01405 0.43 +1.4
313,373 + EX31_RS01405 0.43 +0.8
313,374 - EX31_RS01405 0.43 -0.5
313,433 - EX31_RS01405 0.58 -0.3
313,445 + EX31_RS01405 0.61 -0.6
313,545 + EX31_RS01405 0.85 +1.2
313,546 - EX31_RS01405 0.86 -0.5
313,546 - EX31_RS01405 0.86 +0.6
313,571 - +0.3
313,710 + -0.9
313,733 - -1.0
313,798 + +0.2
313,798 + +0.2
313,799 - -0.5
313,799 - -0.2
313,799 - -0.2
313,799 - -0.2
313,799 - +0.6
313,799 - +1.1
313,799 - -2.4
313,799 - -2.3
313,917 + -0.1
313,970 - EX31_RS01410 0.12 +0.6
314,198 + EX31_RS01410 0.28 -0.7
314,198 + EX31_RS01410 0.28 +0.9
314,198 + EX31_RS01410 0.28 +1.5
314,198 + EX31_RS01410 0.28 -0.3
314,199 - EX31_RS01410 0.29 +0.7
314,199 - EX31_RS01410 0.29 +0.3
314,199 - EX31_RS01410 0.29 -0.5
314,199 - EX31_RS01410 0.29 +0.8
314,199 - EX31_RS01410 0.29 +1.3
314,199 - EX31_RS01410 0.29 +1.1
314,290 + EX31_RS01410 0.35 -0.6
314,290 + EX31_RS01410 0.35 -0.0
314,291 - EX31_RS01410 0.35 -0.2
314,532 + EX31_RS01410 0.53 -0.4
314,532 + EX31_RS01410 0.53 -0.5
314,532 + EX31_RS01410 0.53 +2.0
314,532 + EX31_RS01410 0.53 +1.1
314,534 + EX31_RS01410 0.53 -1.8
314,535 - EX31_RS01410 0.53 -0.5
314,761 - EX31_RS01410 0.70 -0.2
314,790 + EX31_RS01410 0.72 -1.9
314,842 + EX31_RS01410 0.76 -0.1
314,842 + EX31_RS01410 0.76 +0.5
314,885 - EX31_RS01410 0.79 +0.8
315,050 + +1.5
315,073 + +0.6
315,146 - +1.3
315,146 - +1.3
315,161 + +0.7
315,192 - +0.8
315,204 - +0.8
315,324 + -0.3
315,325 - -0.5
315,590 - EX31_RS01415 0.14 +0.8
315,724 + EX31_RS01415 0.19 -1.2
315,724 + EX31_RS01415 0.19 -0.2
315,725 - EX31_RS01415 0.19 +0.7
315,733 + EX31_RS01415 0.19 -0.2
315,734 - EX31_RS01415 0.19 -1.0
315,779 + EX31_RS01415 0.21 +0.2
315,780 - EX31_RS01415 0.21 -0.2
315,782 + EX31_RS01415 0.21 +1.1
315,782 + EX31_RS01415 0.21 +0.2
315,782 + EX31_RS01415 0.21 +1.1
315,783 - EX31_RS01415 0.21 +1.6
315,820 - EX31_RS01415 0.22 -2.3
315,820 - EX31_RS01415 0.22 -0.1
315,820 - EX31_RS01415 0.22 +0.1
315,875 + EX31_RS01415 0.24 -0.2
315,932 + EX31_RS01415 0.26 -0.0
315,932 + EX31_RS01415 0.26 +1.4
316,041 + EX31_RS01415 0.29 +1.6
316,134 - EX31_RS01415 0.32 +1.8

Or see this region's nucleotide sequence