Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03907 and CCNA_03428 are separated by 47 nucleotides CCNA_03428 and CCNA_03429 are separated by 101 nucleotides CCNA_03429 and CCNA_03430 overlap by 1 nucleotides CCNA_03430 and CCNA_03431 are separated by 209 nucleotides
CCNA_03907: CCNA_03907 - hypothetical protein, at 3,592,612 to 3,592,947
_03907
CCNA_03428: CCNA_03428 - conserved hypothetical cytosolic protein, at 3,592,995 to 3,593,264
_03428
CCNA_03429: CCNA_03429 - haloacid dehalogenase superfamily, subfamily IA, at 3,593,366 to 3,593,983
_03429
CCNA_03430: CCNA_03430 - LSU ribosomal protein L36P, at 3,593,983 to 3,594,108
_03430
CCNA_03431: CCNA_03431 - membrane-bound lytic murein transglycosylase B, at 3,594,318 to 3,595,619
_03431
Position (kb)
3593
3594 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3592.378 kb on + strand at 3592.416 kb on - strand at 3592.583 kb on + strand at 3592.586 kb on - strand at 3592.610 kb on + strand at 3592.610 kb on + strand at 3592.618 kb on - strand at 3592.618 kb on - strand at 3592.664 kb on - strand, within CCNA_03907 at 3592.665 kb on - strand, within CCNA_03907 at 3592.694 kb on + strand, within CCNA_03907 at 3592.694 kb on + strand, within CCNA_03907 at 3592.702 kb on - strand, within CCNA_03907 at 3592.702 kb on - strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.729 kb on + strand, within CCNA_03907 at 3592.754 kb on - strand, within CCNA_03907 at 3592.830 kb on + strand, within CCNA_03907 at 3593.001 kb on - strand at 3593.369 kb on + strand at 3593.391 kb on + strand at 3593.423 kb on - strand at 3593.435 kb on + strand, within CCNA_03429 at 3593.438 kb on + strand, within CCNA_03429 at 3593.480 kb on - strand, within CCNA_03429 at 3593.491 kb on - strand, within CCNA_03429 at 3593.513 kb on + strand, within CCNA_03429 at 3593.521 kb on - strand, within CCNA_03429 at 3593.570 kb on - strand, within CCNA_03429 at 3593.580 kb on - strand, within CCNA_03429 at 3593.607 kb on + strand, within CCNA_03429 at 3593.607 kb on + strand, within CCNA_03429 at 3593.615 kb on - strand at 3593.731 kb on + strand, within CCNA_03429 at 3593.751 kb on + strand, within CCNA_03429 at 3593.846 kb on - strand, within CCNA_03429 at 3594.254 kb on + strand at 3594.262 kb on - strand at 3594.299 kb on + strand at 3594.321 kb on + strand at 3594.321 kb on + strand at 3594.329 kb on - strand at 3594.381 kb on - strand at 3594.403 kb on + strand at 3594.406 kb on - strand at 3594.408 kb on + strand at 3594.411 kb on - strand at 3594.437 kb on - strand at 3594.437 kb on - strand at 3594.437 kb on - strand at 3594.438 kb on + strand at 3594.438 kb on + strand at 3594.451 kb on + strand, within CCNA_03431 at 3594.459 kb on - strand, within CCNA_03431 at 3594.545 kb on - strand, within CCNA_03431 at 3594.550 kb on + strand, within CCNA_03431 at 3594.552 kb on + strand, within CCNA_03431 at 3594.552 kb on + strand, within CCNA_03431 at 3594.552 kb on + strand, within CCNA_03431 at 3594.560 kb on - strand, within CCNA_03431 at 3594.577 kb on - strand, within CCNA_03431 at 3594.626 kb on + strand, within CCNA_03431 at 3594.626 kb on + strand, within CCNA_03431 at 3594.642 kb on + strand, within CCNA_03431 at 3594.650 kb on - strand, within CCNA_03431 at 3594.694 kb on + strand at 3594.746 kb on + strand, within CCNA_03431 at 3594.747 kb on + strand, within CCNA_03431 at 3594.763 kb on - strand, within CCNA_03431 at 3594.769 kb on + strand, within CCNA_03431 at 3594.779 kb on - strand, within CCNA_03431 at 3594.790 kb on + strand, within CCNA_03431 at 3594.820 kb on + strand, within CCNA_03431 at 3594.827 kb on + strand, within CCNA_03431 at 3594.857 kb on + strand, within CCNA_03431 at 3594.857 kb on + strand, within CCNA_03431 at 3594.857 kb on + strand, within CCNA_03431 at 3594.863 kb on + strand, within CCNA_03431 at 3594.863 kb on + strand, within CCNA_03431 at 3594.865 kb on - strand, within CCNA_03431 at 3594.865 kb on - strand, within CCNA_03431 at 3594.888 kb on - strand, within CCNA_03431 at 3594.911 kb on + strand, within CCNA_03431 at 3594.926 kb on + strand, within CCNA_03431 at 3594.926 kb on + strand, within CCNA_03431 at 3594.934 kb on + strand, within CCNA_03431 at 3594.934 kb on - strand, within CCNA_03431 at 3594.934 kb on - strand, within CCNA_03431 at 3594.934 kb on - strand, within CCNA_03431 at 3594.953 kb on + strand, within CCNA_03431 at 3594.954 kb on + strand, within CCNA_03431 at 3594.957 kb on - strand, within CCNA_03431 at 3594.959 kb on + strand, within CCNA_03431 at 3594.962 kb on - strand, within CCNA_03431 at 3594.980 kb on + strand, within CCNA_03431
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 3,592,378 + -0.0 3,592,416 - +0.7 3,592,583 + -1.0 3,592,586 - -0.0 3,592,610 + +0.3 3,592,610 + -1.2 3,592,618 - +0.0 3,592,618 - +0.8 3,592,664 - CCNA_03907 0.15 +0.1 3,592,665 - CCNA_03907 0.16 +0.6 3,592,694 + CCNA_03907 0.24 +0.8 3,592,694 + CCNA_03907 0.24 -0.8 3,592,702 - CCNA_03907 0.27 +1.0 3,592,702 - CCNA_03907 0.27 -0.9 3,592,716 + CCNA_03907 0.31 -2.1 3,592,716 + CCNA_03907 0.31 -0.2 3,592,716 + CCNA_03907 0.31 -1.0 3,592,729 + CCNA_03907 0.35 -0.0 3,592,754 - CCNA_03907 0.42 +0.2 3,592,830 + CCNA_03907 0.65 -0.6 3,593,001 - +0.6 3,593,369 + -0.0 3,593,391 + -0.5 3,593,423 - +1.0 3,593,435 + CCNA_03429 0.11 -1.8 3,593,438 + CCNA_03429 0.12 -0.3 3,593,480 - CCNA_03429 0.18 -1.8 3,593,491 - CCNA_03429 0.20 -0.8 3,593,513 + CCNA_03429 0.24 -1.4 3,593,521 - CCNA_03429 0.25 -1.2 3,593,570 - CCNA_03429 0.33 -0.2 3,593,580 - CCNA_03429 0.35 +0.1 3,593,607 + CCNA_03429 0.39 +0.4 3,593,607 + CCNA_03429 0.39 +0.7 3,593,615 - +0.4 3,593,731 + CCNA_03429 0.59 -2.4 3,593,751 + CCNA_03429 0.62 -2.1 3,593,846 - CCNA_03429 0.78 +0.2 3,594,254 + +0.0 3,594,262 - +0.7 3,594,299 + -1.6 3,594,321 + -0.9 3,594,321 + -1.2 3,594,329 - +1.7 3,594,381 - -0.1 3,594,403 + -1.4 3,594,406 - +0.4 3,594,408 + -0.4 3,594,411 - +0.6 3,594,437 - -0.1 3,594,437 - -1.3 3,594,437 - -1.8 3,594,438 + -0.4 3,594,438 + +0.1 3,594,451 + CCNA_03431 0.10 +1.0 3,594,459 - CCNA_03431 0.11 +0.7 3,594,545 - CCNA_03431 0.17 -1.0 3,594,550 + CCNA_03431 0.18 -0.5 3,594,552 + CCNA_03431 0.18 +0.4 3,594,552 + CCNA_03431 0.18 +0.4 3,594,552 + CCNA_03431 0.18 -1.1 3,594,560 - CCNA_03431 0.19 +0.0 3,594,577 - CCNA_03431 0.20 -0.2 3,594,626 + CCNA_03431 0.24 +2.3 3,594,626 + CCNA_03431 0.24 -0.6 3,594,642 + CCNA_03431 0.25 -1.3 3,594,650 - CCNA_03431 0.25 -1.2 3,594,694 + +3.8 3,594,746 + CCNA_03431 0.33 -0.6 3,594,747 + CCNA_03431 0.33 -0.8 3,594,763 - CCNA_03431 0.34 -2.2 3,594,769 + CCNA_03431 0.35 -0.6 3,594,779 - CCNA_03431 0.35 -2.8 3,594,790 + CCNA_03431 0.36 -0.6 3,594,820 + CCNA_03431 0.39 +0.0 3,594,827 + CCNA_03431 0.39 -0.4 3,594,857 + CCNA_03431 0.41 +0.0 3,594,857 + CCNA_03431 0.41 +0.9 3,594,857 + CCNA_03431 0.41 +0.5 3,594,863 + CCNA_03431 0.42 +0.8 3,594,863 + CCNA_03431 0.42 +0.3 3,594,865 - CCNA_03431 0.42 -0.7 3,594,865 - CCNA_03431 0.42 -1.6 3,594,888 - CCNA_03431 0.44 -1.1 3,594,911 + CCNA_03431 0.46 -1.9 3,594,926 + CCNA_03431 0.47 -0.7 3,594,926 + CCNA_03431 0.47 +1.6 3,594,934 + CCNA_03431 0.47 -0.7 3,594,934 - CCNA_03431 0.47 -2.3 3,594,934 - CCNA_03431 0.47 -0.4 3,594,934 - CCNA_03431 0.47 -1.2 3,594,953 + CCNA_03431 0.49 -0.3 3,594,954 + CCNA_03431 0.49 +0.0 3,594,957 - CCNA_03431 0.49 -0.9 3,594,959 + CCNA_03431 0.49 -1.1 3,594,962 - CCNA_03431 0.49 -2.2 3,594,980 + CCNA_03431 0.51 -1.1
Or see this region's nucleotide sequence