Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03429

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03907 and CCNA_03428 are separated by 47 nucleotidesCCNA_03428 and CCNA_03429 are separated by 101 nucleotidesCCNA_03429 and CCNA_03430 overlap by 1 nucleotidesCCNA_03430 and CCNA_03431 are separated by 209 nucleotides CCNA_03907: CCNA_03907 - hypothetical protein, at 3,592,612 to 3,592,947 _03907 CCNA_03428: CCNA_03428 - conserved hypothetical cytosolic protein, at 3,592,995 to 3,593,264 _03428 CCNA_03429: CCNA_03429 - haloacid dehalogenase superfamily, subfamily IA, at 3,593,366 to 3,593,983 _03429 CCNA_03430: CCNA_03430 - LSU ribosomal protein L36P, at 3,593,983 to 3,594,108 _03430 CCNA_03431: CCNA_03431 - membrane-bound lytic murein transglycosylase B, at 3,594,318 to 3,595,619 _03431 Position (kb) 3593 3594Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3592.378 kb on + strandat 3592.416 kb on - strandat 3592.583 kb on + strandat 3592.586 kb on - strandat 3592.610 kb on + strandat 3592.610 kb on + strandat 3592.618 kb on - strandat 3592.618 kb on - strandat 3592.664 kb on - strand, within CCNA_03907at 3592.665 kb on - strand, within CCNA_03907at 3592.694 kb on + strand, within CCNA_03907at 3592.694 kb on + strand, within CCNA_03907at 3592.702 kb on - strand, within CCNA_03907at 3592.702 kb on - strand, within CCNA_03907at 3592.716 kb on + strand, within CCNA_03907at 3592.716 kb on + strand, within CCNA_03907at 3592.716 kb on + strand, within CCNA_03907at 3592.729 kb on + strand, within CCNA_03907at 3592.754 kb on - strand, within CCNA_03907at 3592.830 kb on + strand, within CCNA_03907at 3593.001 kb on - strandat 3593.369 kb on + strandat 3593.391 kb on + strandat 3593.423 kb on - strandat 3593.435 kb on + strand, within CCNA_03429at 3593.438 kb on + strand, within CCNA_03429at 3593.480 kb on - strand, within CCNA_03429at 3593.491 kb on - strand, within CCNA_03429at 3593.513 kb on + strand, within CCNA_03429at 3593.521 kb on - strand, within CCNA_03429at 3593.570 kb on - strand, within CCNA_03429at 3593.580 kb on - strand, within CCNA_03429at 3593.607 kb on + strand, within CCNA_03429at 3593.607 kb on + strand, within CCNA_03429at 3593.615 kb on - strandat 3593.731 kb on + strand, within CCNA_03429at 3593.751 kb on + strand, within CCNA_03429at 3593.846 kb on - strand, within CCNA_03429at 3594.254 kb on + strandat 3594.262 kb on - strandat 3594.299 kb on + strandat 3594.321 kb on + strandat 3594.321 kb on + strandat 3594.329 kb on - strandat 3594.381 kb on - strandat 3594.403 kb on + strandat 3594.406 kb on - strandat 3594.408 kb on + strandat 3594.411 kb on - strandat 3594.437 kb on - strandat 3594.437 kb on - strandat 3594.437 kb on - strandat 3594.438 kb on + strandat 3594.438 kb on + strandat 3594.451 kb on + strand, within CCNA_03431at 3594.459 kb on - strand, within CCNA_03431at 3594.545 kb on - strand, within CCNA_03431at 3594.550 kb on + strand, within CCNA_03431at 3594.552 kb on + strand, within CCNA_03431at 3594.552 kb on + strand, within CCNA_03431at 3594.552 kb on + strand, within CCNA_03431at 3594.560 kb on - strand, within CCNA_03431at 3594.577 kb on - strand, within CCNA_03431at 3594.626 kb on + strand, within CCNA_03431at 3594.626 kb on + strand, within CCNA_03431at 3594.642 kb on + strand, within CCNA_03431at 3594.650 kb on - strand, within CCNA_03431at 3594.694 kb on + strandat 3594.746 kb on + strand, within CCNA_03431at 3594.747 kb on + strand, within CCNA_03431at 3594.763 kb on - strand, within CCNA_03431at 3594.769 kb on + strand, within CCNA_03431at 3594.779 kb on - strand, within CCNA_03431at 3594.790 kb on + strand, within CCNA_03431at 3594.820 kb on + strand, within CCNA_03431at 3594.827 kb on + strand, within CCNA_03431at 3594.857 kb on + strand, within CCNA_03431at 3594.857 kb on + strand, within CCNA_03431at 3594.857 kb on + strand, within CCNA_03431at 3594.863 kb on + strand, within CCNA_03431at 3594.863 kb on + strand, within CCNA_03431at 3594.865 kb on - strand, within CCNA_03431at 3594.865 kb on - strand, within CCNA_03431at 3594.888 kb on - strand, within CCNA_03431at 3594.911 kb on + strand, within CCNA_03431at 3594.926 kb on + strand, within CCNA_03431at 3594.926 kb on + strand, within CCNA_03431at 3594.934 kb on + strand, within CCNA_03431at 3594.934 kb on - strand, within CCNA_03431at 3594.934 kb on - strand, within CCNA_03431at 3594.934 kb on - strand, within CCNA_03431at 3594.953 kb on + strand, within CCNA_03431at 3594.954 kb on + strand, within CCNA_03431at 3594.957 kb on - strand, within CCNA_03431at 3594.959 kb on + strand, within CCNA_03431at 3594.962 kb on - strand, within CCNA_03431at 3594.980 kb on + strand, within CCNA_03431

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
3,592,378 + -0.0
3,592,416 - +0.7
3,592,583 + -1.0
3,592,586 - -0.0
3,592,610 + +0.3
3,592,610 + -1.2
3,592,618 - +0.0
3,592,618 - +0.8
3,592,664 - CCNA_03907 0.15 +0.1
3,592,665 - CCNA_03907 0.16 +0.6
3,592,694 + CCNA_03907 0.24 +0.8
3,592,694 + CCNA_03907 0.24 -0.8
3,592,702 - CCNA_03907 0.27 +1.0
3,592,702 - CCNA_03907 0.27 -0.9
3,592,716 + CCNA_03907 0.31 -2.1
3,592,716 + CCNA_03907 0.31 -0.2
3,592,716 + CCNA_03907 0.31 -1.0
3,592,729 + CCNA_03907 0.35 -0.0
3,592,754 - CCNA_03907 0.42 +0.2
3,592,830 + CCNA_03907 0.65 -0.6
3,593,001 - +0.6
3,593,369 + -0.0
3,593,391 + -0.5
3,593,423 - +1.0
3,593,435 + CCNA_03429 0.11 -1.8
3,593,438 + CCNA_03429 0.12 -0.3
3,593,480 - CCNA_03429 0.18 -1.8
3,593,491 - CCNA_03429 0.20 -0.8
3,593,513 + CCNA_03429 0.24 -1.4
3,593,521 - CCNA_03429 0.25 -1.2
3,593,570 - CCNA_03429 0.33 -0.2
3,593,580 - CCNA_03429 0.35 +0.1
3,593,607 + CCNA_03429 0.39 +0.4
3,593,607 + CCNA_03429 0.39 +0.7
3,593,615 - +0.4
3,593,731 + CCNA_03429 0.59 -2.4
3,593,751 + CCNA_03429 0.62 -2.1
3,593,846 - CCNA_03429 0.78 +0.2
3,594,254 + +0.0
3,594,262 - +0.7
3,594,299 + -1.6
3,594,321 + -0.9
3,594,321 + -1.2
3,594,329 - +1.7
3,594,381 - -0.1
3,594,403 + -1.4
3,594,406 - +0.4
3,594,408 + -0.4
3,594,411 - +0.6
3,594,437 - -0.1
3,594,437 - -1.3
3,594,437 - -1.8
3,594,438 + -0.4
3,594,438 + +0.1
3,594,451 + CCNA_03431 0.10 +1.0
3,594,459 - CCNA_03431 0.11 +0.7
3,594,545 - CCNA_03431 0.17 -1.0
3,594,550 + CCNA_03431 0.18 -0.5
3,594,552 + CCNA_03431 0.18 +0.4
3,594,552 + CCNA_03431 0.18 +0.4
3,594,552 + CCNA_03431 0.18 -1.1
3,594,560 - CCNA_03431 0.19 +0.0
3,594,577 - CCNA_03431 0.20 -0.2
3,594,626 + CCNA_03431 0.24 +2.3
3,594,626 + CCNA_03431 0.24 -0.6
3,594,642 + CCNA_03431 0.25 -1.3
3,594,650 - CCNA_03431 0.25 -1.2
3,594,694 + +3.8
3,594,746 + CCNA_03431 0.33 -0.6
3,594,747 + CCNA_03431 0.33 -0.8
3,594,763 - CCNA_03431 0.34 -2.2
3,594,769 + CCNA_03431 0.35 -0.6
3,594,779 - CCNA_03431 0.35 -2.8
3,594,790 + CCNA_03431 0.36 -0.6
3,594,820 + CCNA_03431 0.39 +0.0
3,594,827 + CCNA_03431 0.39 -0.4
3,594,857 + CCNA_03431 0.41 +0.0
3,594,857 + CCNA_03431 0.41 +0.9
3,594,857 + CCNA_03431 0.41 +0.5
3,594,863 + CCNA_03431 0.42 +0.8
3,594,863 + CCNA_03431 0.42 +0.3
3,594,865 - CCNA_03431 0.42 -0.7
3,594,865 - CCNA_03431 0.42 -1.6
3,594,888 - CCNA_03431 0.44 -1.1
3,594,911 + CCNA_03431 0.46 -1.9
3,594,926 + CCNA_03431 0.47 -0.7
3,594,926 + CCNA_03431 0.47 +1.6
3,594,934 + CCNA_03431 0.47 -0.7
3,594,934 - CCNA_03431 0.47 -2.3
3,594,934 - CCNA_03431 0.47 -0.4
3,594,934 - CCNA_03431 0.47 -1.2
3,594,953 + CCNA_03431 0.49 -0.3
3,594,954 + CCNA_03431 0.49 +0.0
3,594,957 - CCNA_03431 0.49 -0.9
3,594,959 + CCNA_03431 0.49 -1.1
3,594,962 - CCNA_03431 0.49 -2.2
3,594,980 + CCNA_03431 0.51 -1.1

Or see this region's nucleotide sequence