Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02261

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02259 and CCNA_02260 are separated by 205 nucleotidesCCNA_02260 and CCNA_02261 are separated by 83 nucleotidesCCNA_02261 and CCNA_02262 are separated by 23 nucleotides CCNA_02259: CCNA_02259 - hypothetical protein, at 2,410,154 to 2,410,720 _02259 CCNA_02260: CCNA_02260 - hypothetical protein, at 2,410,926 to 2,411,330 _02260 CCNA_02261: CCNA_02261 - propionyl-CoA carboxylase biotin-containing subunit, at 2,411,414 to 2,413,423 _02261 CCNA_02262: CCNA_02262 - laminin G domain protein, at 2,413,447 to 2,417,358 _02262 Position (kb) 2411 2412 2413 2414Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2410.487 kb on - strand, within CCNA_02259at 2410.487 kb on - strand, within CCNA_02259at 2410.487 kb on - strand, within CCNA_02259at 2410.487 kb on - strand, within CCNA_02259at 2410.487 kb on - strand, within CCNA_02259at 2410.487 kb on - strand, within CCNA_02259at 2410.805 kb on - strandat 2410.805 kb on - strandat 2410.826 kb on - strandat 2410.827 kb on - strandat 2410.867 kb on - strandat 2410.882 kb on + strandat 2410.882 kb on + strandat 2410.890 kb on - strandat 2410.890 kb on - strandat 2410.890 kb on - strandat 2410.890 kb on - strandat 2410.898 kb on + strandat 2410.948 kb on + strandat 2410.949 kb on + strandat 2410.991 kb on + strand, within CCNA_02260at 2411.046 kb on + strand, within CCNA_02260at 2411.068 kb on - strand, within CCNA_02260at 2411.097 kb on + strand, within CCNA_02260at 2411.128 kb on + strand, within CCNA_02260at 2411.138 kb on + strand, within CCNA_02260at 2411.183 kb on + strand, within CCNA_02260at 2411.201 kb on - strand, within CCNA_02260at 2411.338 kb on - strandat 2411.367 kb on + strandat 2411.375 kb on - strandat 2411.375 kb on - strandat 2411.375 kb on - strandat 2411.375 kb on - strandat 2411.375 kb on - strandat 2411.431 kb on + strandat 2411.440 kb on - strandat 2411.475 kb on + strandat 2411.480 kb on + strandat 2411.480 kb on + strandat 2411.516 kb on - strandat 2411.620 kb on + strand, within CCNA_02261at 2411.620 kb on + strand, within CCNA_02261at 2411.628 kb on - strand, within CCNA_02261at 2411.628 kb on - strand, within CCNA_02261at 2411.628 kb on - strand, within CCNA_02261at 2411.628 kb on - strand, within CCNA_02261at 2411.628 kb on - strand, within CCNA_02261at 2411.690 kb on - strand, within CCNA_02261at 2411.690 kb on - strand, within CCNA_02261at 2411.699 kb on + strand, within CCNA_02261at 2411.699 kb on + strand, within CCNA_02261at 2411.707 kb on - strand, within CCNA_02261at 2411.746 kb on - strand, within CCNA_02261at 2411.757 kb on + strand, within CCNA_02261at 2411.757 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.781 kb on + strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.789 kb on - strand, within CCNA_02261at 2411.811 kb on - strand, within CCNA_02261at 2411.860 kb on + strand, within CCNA_02261at 2411.865 kb on + strand, within CCNA_02261at 2411.883 kb on + strand, within CCNA_02261at 2411.917 kb on + strand, within CCNA_02261at 2411.947 kb on + strand, within CCNA_02261at 2411.971 kb on + strand, within CCNA_02261at 2411.976 kb on + strand, within CCNA_02261at 2411.984 kb on - strand, within CCNA_02261at 2411.995 kb on - strand, within CCNA_02261at 2412.007 kb on - strand, within CCNA_02261at 2412.064 kb on + strand, within CCNA_02261at 2412.147 kb on - strand, within CCNA_02261at 2412.148 kb on + strand, within CCNA_02261at 2412.151 kb on - strand, within CCNA_02261at 2412.151 kb on - strand, within CCNA_02261at 2412.190 kb on + strand, within CCNA_02261at 2412.233 kb on - strand, within CCNA_02261at 2412.309 kb on - strand, within CCNA_02261at 2412.309 kb on - strand, within CCNA_02261at 2412.309 kb on - strand, within CCNA_02261at 2412.325 kb on + strand, within CCNA_02261at 2412.410 kb on - strand, within CCNA_02261at 2412.436 kb on - strand, within CCNA_02261at 2412.442 kb on + strand, within CCNA_02261at 2412.443 kb on - strand, within CCNA_02261at 2412.478 kb on - strand, within CCNA_02261at 2412.478 kb on - strand, within CCNA_02261at 2412.504 kb on - strand, within CCNA_02261at 2412.577 kb on - strand, within CCNA_02261at 2412.581 kb on + strand, within CCNA_02261at 2412.584 kb on - strand, within CCNA_02261at 2412.588 kb on - strand, within CCNA_02261at 2412.604 kb on - strand, within CCNA_02261at 2412.630 kb on + strand, within CCNA_02261at 2412.630 kb on + strand, within CCNA_02261at 2412.630 kb on + strand, within CCNA_02261at 2412.631 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.638 kb on - strand, within CCNA_02261at 2412.643 kb on - strand, within CCNA_02261at 2412.643 kb on - strand, within CCNA_02261at 2412.705 kb on + strand, within CCNA_02261at 2412.720 kb on - strand, within CCNA_02261at 2412.739 kb on - strand, within CCNA_02261at 2412.762 kb on + strand, within CCNA_02261at 2412.762 kb on + strand, within CCNA_02261at 2412.762 kb on + strand, within CCNA_02261at 2412.762 kb on + strand, within CCNA_02261at 2412.770 kb on - strand, within CCNA_02261at 2412.855 kb on + strand, within CCNA_02261at 2412.862 kb on - strand, within CCNA_02261at 2412.863 kb on - strand, within CCNA_02261at 2412.863 kb on - strand, within CCNA_02261at 2412.876 kb on + strand, within CCNA_02261at 2412.905 kb on + strand, within CCNA_02261at 2412.913 kb on - strand, within CCNA_02261at 2412.913 kb on - strand, within CCNA_02261at 2412.948 kb on + strand, within CCNA_02261at 2412.958 kb on + strand, within CCNA_02261at 2413.045 kb on - strand, within CCNA_02261at 2413.088 kb on + strand, within CCNA_02261at 2413.105 kb on + strand, within CCNA_02261at 2413.105 kb on + strand, within CCNA_02261at 2413.105 kb on + strand, within CCNA_02261at 2413.127 kb on + strand, within CCNA_02261at 2413.128 kb on - strand, within CCNA_02261at 2413.135 kb on - strand, within CCNA_02261at 2413.137 kb on + strand, within CCNA_02261at 2413.142 kb on + strand, within CCNA_02261at 2413.150 kb on - strand, within CCNA_02261at 2413.174 kb on + strand, within CCNA_02261at 2413.242 kb on + strandat 2413.250 kb on - strandat 2413.250 kb on - strandat 2413.274 kb on - strandat 2413.291 kb on - strandat 2413.305 kb on + strandat 2413.305 kb on + strandat 2413.326 kb on + strandat 2413.365 kb on + strandat 2413.390 kb on + strandat 2413.556 kb on - strandat 2413.557 kb on - strandat 2413.616 kb on + strandat 2413.621 kb on + strandat 2413.621 kb on + strandat 2413.623 kb on - strandat 2413.635 kb on + strandat 2413.671 kb on + strandat 2413.693 kb on + strandat 2413.751 kb on + strandat 2413.769 kb on - strandat 2413.771 kb on + strandat 2413.779 kb on - strandat 2413.823 kb on + strandat 2413.825 kb on - strandat 2413.831 kb on - strandat 2413.893 kb on + strand, within CCNA_02262at 2413.916 kb on + strand, within CCNA_02262at 2414.022 kb on + strand, within CCNA_02262at 2414.022 kb on + strand, within CCNA_02262at 2414.040 kb on - strand, within CCNA_02262at 2414.047 kb on + strand, within CCNA_02262at 2414.062 kb on + strand, within CCNA_02262at 2414.067 kb on + strand, within CCNA_02262at 2414.070 kb on - strand, within CCNA_02262at 2414.070 kb on - strand, within CCNA_02262at 2414.088 kb on - strand, within CCNA_02262at 2414.095 kb on + strandat 2414.102 kb on + strand, within CCNA_02262at 2414.136 kb on + strand, within CCNA_02262at 2414.144 kb on - strand, within CCNA_02262at 2414.154 kb on - strand, within CCNA_02262at 2414.167 kb on - strand, within CCNA_02262at 2414.187 kb on + strand, within CCNA_02262at 2414.195 kb on - strand, within CCNA_02262at 2414.206 kb on + strand, within CCNA_02262at 2414.214 kb on - strand, within CCNA_02262at 2414.214 kb on - strand, within CCNA_02262at 2414.215 kb on + strand, within CCNA_02262at 2414.291 kb on - strand, within CCNA_02262at 2414.306 kb on + strand, within CCNA_02262at 2414.388 kb on + strand, within CCNA_02262at 2414.388 kb on + strand, within CCNA_02262at 2414.390 kb on - strand, within CCNA_02262at 2414.396 kb on - strand, within CCNA_02262at 2414.396 kb on - strand, within CCNA_02262

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,410,487 - CCNA_02259 0.59 +0.8
2,410,487 - CCNA_02259 0.59 -0.7
2,410,487 - CCNA_02259 0.59 +1.4
2,410,487 - CCNA_02259 0.59 -1.1
2,410,487 - CCNA_02259 0.59 -0.0
2,410,487 - CCNA_02259 0.59 +1.2
2,410,805 - +0.4
2,410,805 - +0.3
2,410,826 - +1.3
2,410,827 - +0.5
2,410,867 - +0.1
2,410,882 + -1.6
2,410,882 + -0.2
2,410,890 - +1.2
2,410,890 - +1.2
2,410,890 - -2.0
2,410,890 - +1.3
2,410,898 + -1.1
2,410,948 + +0.6
2,410,949 + -2.5
2,410,991 + CCNA_02260 0.16 +0.1
2,411,046 + CCNA_02260 0.30 -0.9
2,411,068 - CCNA_02260 0.35 +0.9
2,411,097 + CCNA_02260 0.42 +2.6
2,411,128 + CCNA_02260 0.50 +0.6
2,411,138 + CCNA_02260 0.52 -0.4
2,411,183 + CCNA_02260 0.63 -1.6
2,411,201 - CCNA_02260 0.68 +0.2
2,411,338 - +0.5
2,411,367 + -1.0
2,411,375 - +0.9
2,411,375 - -1.1
2,411,375 - +0.4
2,411,375 - +1.2
2,411,375 - +1.5
2,411,431 + -1.3
2,411,440 - +0.3
2,411,475 + +0.3
2,411,480 + -0.2
2,411,480 + -0.5
2,411,516 - +1.4
2,411,620 + CCNA_02261 0.10 -0.6
2,411,620 + CCNA_02261 0.10 -1.2
2,411,628 - CCNA_02261 0.11 +0.3
2,411,628 - CCNA_02261 0.11 -0.1
2,411,628 - CCNA_02261 0.11 +0.3
2,411,628 - CCNA_02261 0.11 +0.0
2,411,628 - CCNA_02261 0.11 -1.4
2,411,690 - CCNA_02261 0.14 +0.5
2,411,690 - CCNA_02261 0.14 -0.4
2,411,699 + CCNA_02261 0.14 -2.2
2,411,699 + CCNA_02261 0.14 -2.2
2,411,707 - CCNA_02261 0.15 -0.2
2,411,746 - CCNA_02261 0.17 -1.5
2,411,757 + CCNA_02261 0.17 -1.3
2,411,757 + CCNA_02261 0.17 -1.2
2,411,781 + CCNA_02261 0.18 -1.8
2,411,781 + CCNA_02261 0.18 -1.7
2,411,781 + CCNA_02261 0.18 -2.8
2,411,781 + CCNA_02261 0.18 -1.6
2,411,781 + CCNA_02261 0.18 -1.5
2,411,781 + CCNA_02261 0.18 +0.1
2,411,781 + CCNA_02261 0.18 -3.0
2,411,789 - CCNA_02261 0.19 -1.8
2,411,789 - CCNA_02261 0.19 -0.5
2,411,789 - CCNA_02261 0.19 -0.6
2,411,789 - CCNA_02261 0.19 -0.3
2,411,789 - CCNA_02261 0.19 +0.1
2,411,789 - CCNA_02261 0.19 -0.6
2,411,789 - CCNA_02261 0.19 -1.1
2,411,789 - CCNA_02261 0.19 -0.8
2,411,789 - CCNA_02261 0.19 -2.0
2,411,789 - CCNA_02261 0.19 -0.4
2,411,811 - CCNA_02261 0.20 -0.9
2,411,860 + CCNA_02261 0.22 -1.1
2,411,865 + CCNA_02261 0.22 -1.7
2,411,883 + CCNA_02261 0.23 -1.9
2,411,917 + CCNA_02261 0.25 -2.9
2,411,947 + CCNA_02261 0.27 -0.8
2,411,971 + CCNA_02261 0.28 -2.5
2,411,976 + CCNA_02261 0.28 -1.3
2,411,984 - CCNA_02261 0.28 -0.0
2,411,995 - CCNA_02261 0.29 -0.4
2,412,007 - CCNA_02261 0.30 +0.0
2,412,064 + CCNA_02261 0.32 -2.4
2,412,147 - CCNA_02261 0.36 -2.0
2,412,148 + CCNA_02261 0.37 -1.2
2,412,151 - CCNA_02261 0.37 +0.4
2,412,151 - CCNA_02261 0.37 +1.0
2,412,190 + CCNA_02261 0.39 +1.3
2,412,233 - CCNA_02261 0.41 -2.3
2,412,309 - CCNA_02261 0.45 -1.0
2,412,309 - CCNA_02261 0.45 -1.5
2,412,309 - CCNA_02261 0.45 -1.8
2,412,325 + CCNA_02261 0.45 -1.2
2,412,410 - CCNA_02261 0.50 -0.3
2,412,436 - CCNA_02261 0.51 -0.2
2,412,442 + CCNA_02261 0.51 -2.2
2,412,443 - CCNA_02261 0.51 +0.7
2,412,478 - CCNA_02261 0.53 -0.6
2,412,478 - CCNA_02261 0.53 -1.3
2,412,504 - CCNA_02261 0.54 -2.7
2,412,577 - CCNA_02261 0.58 -0.4
2,412,581 + CCNA_02261 0.58 -1.7
2,412,584 - CCNA_02261 0.58 -1.0
2,412,588 - CCNA_02261 0.58 -1.3
2,412,604 - CCNA_02261 0.59 -1.5
2,412,630 + CCNA_02261 0.60 -1.5
2,412,630 + CCNA_02261 0.60 -0.2
2,412,630 + CCNA_02261 0.60 -1.8
2,412,631 - CCNA_02261 0.61 -1.2
2,412,638 - CCNA_02261 0.61 -0.2
2,412,638 - CCNA_02261 0.61 -0.7
2,412,638 - CCNA_02261 0.61 -0.8
2,412,638 - CCNA_02261 0.61 -0.8
2,412,638 - CCNA_02261 0.61 -2.4
2,412,638 - CCNA_02261 0.61 +0.2
2,412,643 - CCNA_02261 0.61 -2.6
2,412,643 - CCNA_02261 0.61 -0.2
2,412,705 + CCNA_02261 0.64 +0.4
2,412,720 - CCNA_02261 0.65 -1.9
2,412,739 - CCNA_02261 0.66 -1.2
2,412,762 + CCNA_02261 0.67 -0.4
2,412,762 + CCNA_02261 0.67 -1.7
2,412,762 + CCNA_02261 0.67 -0.4
2,412,762 + CCNA_02261 0.67 -2.2
2,412,770 - CCNA_02261 0.67 -0.2
2,412,855 + CCNA_02261 0.72 -1.2
2,412,862 - CCNA_02261 0.72 -0.2
2,412,863 - CCNA_02261 0.72 -1.7
2,412,863 - CCNA_02261 0.72 -2.4
2,412,876 + CCNA_02261 0.73 -2.3
2,412,905 + CCNA_02261 0.74 -0.4
2,412,913 - CCNA_02261 0.75 -2.5
2,412,913 - CCNA_02261 0.75 -1.0
2,412,948 + CCNA_02261 0.76 -0.8
2,412,958 + CCNA_02261 0.77 +1.3
2,413,045 - CCNA_02261 0.81 -0.7
2,413,088 + CCNA_02261 0.83 -3.3
2,413,105 + CCNA_02261 0.84 -2.8
2,413,105 + CCNA_02261 0.84 -0.8
2,413,105 + CCNA_02261 0.84 -1.8
2,413,127 + CCNA_02261 0.85 -2.6
2,413,128 - CCNA_02261 0.85 -2.3
2,413,135 - CCNA_02261 0.86 -0.9
2,413,137 + CCNA_02261 0.86 -1.3
2,413,142 + CCNA_02261 0.86 -3.0
2,413,150 - CCNA_02261 0.86 +0.8
2,413,174 + CCNA_02261 0.88 -3.1
2,413,242 + -2.9
2,413,250 - -1.4
2,413,250 - -2.5
2,413,274 - -1.8
2,413,291 - -3.0
2,413,305 + -1.3
2,413,305 + -1.7
2,413,326 + -2.5
2,413,365 + -0.7
2,413,390 + -0.9
2,413,556 - -0.1
2,413,557 - -1.0
2,413,616 + -0.8
2,413,621 + -0.6
2,413,621 + -0.4
2,413,623 - +0.3
2,413,635 + +0.3
2,413,671 + -0.5
2,413,693 + -0.9
2,413,751 + +0.4
2,413,769 - +0.2
2,413,771 + -1.0
2,413,779 - -1.2
2,413,823 + -1.3
2,413,825 - -0.5
2,413,831 - -0.6
2,413,893 + CCNA_02262 0.11 -2.4
2,413,916 + CCNA_02262 0.12 -0.5
2,414,022 + CCNA_02262 0.15 -1.0
2,414,022 + CCNA_02262 0.15 -0.8
2,414,040 - CCNA_02262 0.15 -0.2
2,414,047 + CCNA_02262 0.15 -0.7
2,414,062 + CCNA_02262 0.16 +1.1
2,414,067 + CCNA_02262 0.16 +0.1
2,414,070 - CCNA_02262 0.16 -0.5
2,414,070 - CCNA_02262 0.16 -1.2
2,414,088 - CCNA_02262 0.16 +0.9
2,414,095 + +1.3
2,414,102 + CCNA_02262 0.17 +0.6
2,414,136 + CCNA_02262 0.18 -0.9
2,414,144 - CCNA_02262 0.18 +2.3
2,414,154 - CCNA_02262 0.18 -0.4
2,414,167 - CCNA_02262 0.18 -0.9
2,414,187 + CCNA_02262 0.19 -0.1
2,414,195 - CCNA_02262 0.19 +0.9
2,414,206 + CCNA_02262 0.19 +0.4
2,414,214 - CCNA_02262 0.20 +1.2
2,414,214 - CCNA_02262 0.20 -0.2
2,414,215 + CCNA_02262 0.20 -2.6
2,414,291 - CCNA_02262 0.22 -2.3
2,414,306 + CCNA_02262 0.22 -1.2
2,414,388 + CCNA_02262 0.24 -0.5
2,414,388 + CCNA_02262 0.24 +0.6
2,414,390 - CCNA_02262 0.24 -2.6
2,414,396 - CCNA_02262 0.24 -1.4
2,414,396 - CCNA_02262 0.24 -1.0

Or see this region's nucleotide sequence