Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02105

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02102 and CCNA_02103 overlap by 4 nucleotidesCCNA_02103 and CCNA_02104 overlap by 1 nucleotidesCCNA_02104 and CCNA_02105 are separated by 61 nucleotidesCCNA_02105 and CCNA_02106 are separated by 274 nucleotides CCNA_02102: CCNA_02102 - glycosyl hydrolase, at 2,251,005 to 2,252,048 _02102 CCNA_02103: CCNA_02103 - hypothetical protein, at 2,252,045 to 2,252,605 _02103 CCNA_02104: CCNA_02104 - GIY-YIG domain protein, at 2,252,605 to 2,252,940 _02104 CCNA_02105: CCNA_02105 - hypothetical protein, at 2,253,002 to 2,253,388 _02105 CCNA_02106: CCNA_02106 - TonB-dependent outer membrane receptor, at 2,253,663 to 2,256,422 _02106 Position (kb) 2253 2254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2252.013 kb on + strandat 2252.021 kb on - strandat 2252.025 kb on + strandat 2252.042 kb on + strandat 2252.042 kb on + strandat 2252.050 kb on - strandat 2252.072 kb on - strandat 2252.080 kb on + strandat 2252.096 kb on - strandat 2252.096 kb on - strandat 2252.096 kb on - strandat 2252.101 kb on - strand, within CCNA_02103at 2252.118 kb on - strand, within CCNA_02103at 2252.166 kb on - strand, within CCNA_02103at 2252.187 kb on - strand, within CCNA_02103at 2252.187 kb on - strand, within CCNA_02103at 2252.187 kb on - strand, within CCNA_02103at 2252.187 kb on - strand, within CCNA_02103at 2252.370 kb on - strand, within CCNA_02103at 2252.521 kb on - strand, within CCNA_02103at 2252.575 kb on - strandat 2252.608 kb on + strandat 2252.624 kb on - strandat 2252.662 kb on - strand, within CCNA_02104at 2252.691 kb on + strand, within CCNA_02104at 2252.705 kb on + strand, within CCNA_02104at 2252.740 kb on - strand, within CCNA_02104at 2252.754 kb on - strand, within CCNA_02104at 2252.791 kb on - strand, within CCNA_02104at 2252.807 kb on - strand, within CCNA_02104at 2252.826 kb on + strand, within CCNA_02104at 2252.842 kb on + strand, within CCNA_02104at 2252.851 kb on - strand, within CCNA_02104at 2252.895 kb on - strand, within CCNA_02104at 2252.930 kb on + strandat 2253.061 kb on + strand, within CCNA_02105at 2253.091 kb on + strand, within CCNA_02105at 2253.099 kb on - strand, within CCNA_02105at 2253.099 kb on - strand, within CCNA_02105at 2253.099 kb on - strand, within CCNA_02105at 2253.128 kb on - strand, within CCNA_02105at 2253.130 kb on + strand, within CCNA_02105at 2253.130 kb on + strand, within CCNA_02105at 2253.138 kb on - strand, within CCNA_02105at 2253.138 kb on - strand, within CCNA_02105at 2253.148 kb on - strand, within CCNA_02105at 2253.149 kb on + strand, within CCNA_02105at 2253.215 kb on - strand, within CCNA_02105at 2253.258 kb on - strand, within CCNA_02105at 2253.268 kb on - strand, within CCNA_02105at 2253.276 kb on - strand, within CCNA_02105at 2253.289 kb on + strand, within CCNA_02105at 2253.324 kb on - strand, within CCNA_02105at 2253.326 kb on + strand, within CCNA_02105at 2253.326 kb on + strand, within CCNA_02105at 2253.331 kb on + strandat 2253.340 kb on + strand, within CCNA_02105at 2253.348 kb on - strand, within CCNA_02105at 2253.348 kb on - strand, within CCNA_02105at 2253.354 kb on + strandat 2253.362 kb on - strandat 2253.426 kb on + strandat 2253.426 kb on + strandat 2253.452 kb on - strandat 2253.454 kb on - strandat 2253.454 kb on - strandat 2253.454 kb on - strandat 2253.488 kb on - strandat 2253.587 kb on + strandat 2253.614 kb on + strandat 2253.614 kb on + strandat 2253.614 kb on + strandat 2253.614 kb on + strandat 2253.614 kb on + strandat 2253.614 kb on + strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.622 kb on - strandat 2253.655 kb on + strandat 2253.669 kb on - strandat 2253.684 kb on + strandat 2253.700 kb on - strandat 2253.707 kb on + strandat 2253.715 kb on - strandat 2253.715 kb on - strandat 2253.750 kb on - strandat 2253.750 kb on - strandat 2253.761 kb on + strandat 2253.775 kb on - strandat 2253.819 kb on - strandat 2253.819 kb on - strandat 2253.821 kb on - strandat 2253.828 kb on + strandat 2253.899 kb on - strandat 2253.953 kb on - strand, within CCNA_02106at 2253.954 kb on + strand, within CCNA_02106at 2253.985 kb on - strand, within CCNA_02106at 2254.003 kb on + strand, within CCNA_02106at 2254.010 kb on - strand, within CCNA_02106at 2254.010 kb on - strand, within CCNA_02106at 2254.057 kb on + strand, within CCNA_02106at 2254.076 kb on - strand, within CCNA_02106at 2254.082 kb on + strand, within CCNA_02106at 2254.130 kb on - strand, within CCNA_02106at 2254.151 kb on + strand, within CCNA_02106at 2254.336 kb on + strand, within CCNA_02106at 2254.336 kb on + strand, within CCNA_02106at 2254.336 kb on + strand, within CCNA_02106at 2254.336 kb on + strand, within CCNA_02106at 2254.344 kb on - strand, within CCNA_02106at 2254.344 kb on - strand, within CCNA_02106at 2254.346 kb on + strand, within CCNA_02106

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,252,013 + -0.7
2,252,021 - -1.9
2,252,025 + -0.5
2,252,042 + -0.1
2,252,042 + -1.3
2,252,050 - -1.1
2,252,072 - +1.7
2,252,080 + -0.6
2,252,096 - +1.2
2,252,096 - +2.3
2,252,096 - +1.1
2,252,101 - CCNA_02103 0.10 +0.8
2,252,118 - CCNA_02103 0.13 +1.4
2,252,166 - CCNA_02103 0.22 +1.3
2,252,187 - CCNA_02103 0.25 +1.7
2,252,187 - CCNA_02103 0.25 +2.2
2,252,187 - CCNA_02103 0.25 +1.4
2,252,187 - CCNA_02103 0.25 +0.9
2,252,370 - CCNA_02103 0.58 +0.8
2,252,521 - CCNA_02103 0.85 +1.4
2,252,575 - +2.4
2,252,608 + +1.0
2,252,624 - +1.9
2,252,662 - CCNA_02104 0.17 -1.1
2,252,691 + CCNA_02104 0.26 -1.3
2,252,705 + CCNA_02104 0.30 +0.1
2,252,740 - CCNA_02104 0.40 -0.4
2,252,754 - CCNA_02104 0.44 -1.2
2,252,791 - CCNA_02104 0.55 -0.6
2,252,807 - CCNA_02104 0.60 +0.9
2,252,826 + CCNA_02104 0.66 +1.3
2,252,842 + CCNA_02104 0.71 -0.7
2,252,851 - CCNA_02104 0.73 +0.7
2,252,895 - CCNA_02104 0.86 -1.3
2,252,930 + -1.4
2,253,061 + CCNA_02105 0.15 -0.3
2,253,091 + CCNA_02105 0.23 -1.6
2,253,099 - CCNA_02105 0.25 -0.9
2,253,099 - CCNA_02105 0.25 -0.6
2,253,099 - CCNA_02105 0.25 -1.5
2,253,128 - CCNA_02105 0.33 -0.6
2,253,130 + CCNA_02105 0.33 -0.6
2,253,130 + CCNA_02105 0.33 -1.8
2,253,138 - CCNA_02105 0.35 -0.6
2,253,138 - CCNA_02105 0.35 +0.1
2,253,148 - CCNA_02105 0.38 -0.4
2,253,149 + CCNA_02105 0.38 -1.3
2,253,215 - CCNA_02105 0.55 -0.1
2,253,258 - CCNA_02105 0.66 -0.1
2,253,268 - CCNA_02105 0.69 -0.8
2,253,276 - CCNA_02105 0.71 -1.0
2,253,289 + CCNA_02105 0.74 -0.1
2,253,324 - CCNA_02105 0.83 +0.6
2,253,326 + CCNA_02105 0.84 +1.3
2,253,326 + CCNA_02105 0.84 -1.0
2,253,331 + +1.6
2,253,340 + CCNA_02105 0.87 +0.3
2,253,348 - CCNA_02105 0.89 +0.3
2,253,348 - CCNA_02105 0.89 -0.6
2,253,354 + +0.3
2,253,362 - +0.9
2,253,426 + +0.6
2,253,426 + -1.1
2,253,452 - +0.1
2,253,454 - -2.0
2,253,454 - +0.1
2,253,454 - -2.3
2,253,488 - -1.1
2,253,587 + -2.4
2,253,614 + -1.3
2,253,614 + -1.5
2,253,614 + -0.1
2,253,614 + +0.1
2,253,614 + -1.1
2,253,614 + -0.7
2,253,622 - -1.2
2,253,622 - +0.3
2,253,622 - -0.8
2,253,622 - +0.8
2,253,622 - -1.7
2,253,622 - -3.0
2,253,622 - +0.3
2,253,622 - -0.4
2,253,655 + -0.8
2,253,669 - -1.2
2,253,684 + -1.9
2,253,700 - -0.7
2,253,707 + +1.3
2,253,715 - -1.4
2,253,715 - -0.7
2,253,750 - +0.1
2,253,750 - +0.9
2,253,761 + -0.2
2,253,775 - -0.8
2,253,819 - +0.1
2,253,819 - -1.8
2,253,821 - -0.7
2,253,828 + -1.2
2,253,899 - -0.6
2,253,953 - CCNA_02106 0.11 -1.9
2,253,954 + CCNA_02106 0.11 +0.5
2,253,985 - CCNA_02106 0.12 +0.3
2,254,003 + CCNA_02106 0.12 -0.3
2,254,010 - CCNA_02106 0.13 -2.1
2,254,010 - CCNA_02106 0.13 -1.4
2,254,057 + CCNA_02106 0.14 -0.3
2,254,076 - CCNA_02106 0.15 -0.0
2,254,082 + CCNA_02106 0.15 -0.1
2,254,130 - CCNA_02106 0.17 -0.9
2,254,151 + CCNA_02106 0.18 -0.7
2,254,336 + CCNA_02106 0.24 -0.8
2,254,336 + CCNA_02106 0.24 +0.4
2,254,336 + CCNA_02106 0.24 -0.5
2,254,336 + CCNA_02106 0.24 +0.4
2,254,344 - CCNA_02106 0.25 -2.9
2,254,344 - CCNA_02106 0.25 +1.7
2,254,346 + CCNA_02106 0.25 -0.1

Or see this region's nucleotide sequence