Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01168 and CCNA_01169 are separated by 95 nucleotides CCNA_01169 and CCNA_01170 are separated by 18 nucleotides
CCNA_01168: CCNA_01168 - 3-ketoacyl-CoA thiolase, at 1,286,584 to 1,287,783
_01168
CCNA_01169: CCNA_01169 - hypothetical protein, at 1,287,879 to 1,288,691
_01169
CCNA_01170: CCNA_01170 - TonB-dependent receptor, at 1,288,710 to 1,291,355
_01170
Position (kb)
1287
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1287.012 kb on - strand, within CCNA_01168 at 1287.193 kb on + strand, within CCNA_01168 at 1287.246 kb on - strand, within CCNA_01168 at 1287.766 kb on + strand at 1287.790 kb on + strand at 1287.813 kb on - strand at 1287.830 kb on + strand at 1287.830 kb on + strand at 1287.837 kb on + strand at 1287.838 kb on - strand at 1287.838 kb on - strand at 1287.838 kb on - strand at 1287.877 kb on + strand at 1287.885 kb on - strand at 1287.885 kb on - strand at 1287.933 kb on + strand at 1287.947 kb on - strand at 1288.035 kb on + strand, within CCNA_01169 at 1288.057 kb on + strand, within CCNA_01169 at 1288.075 kb on - strand, within CCNA_01169 at 1288.089 kb on - strand, within CCNA_01169 at 1288.145 kb on + strand, within CCNA_01169 at 1288.148 kb on - strand, within CCNA_01169 at 1288.168 kb on - strand, within CCNA_01169 at 1288.190 kb on + strand, within CCNA_01169 at 1288.205 kb on + strand, within CCNA_01169 at 1288.237 kb on - strand, within CCNA_01169 at 1288.246 kb on + strand at 1288.307 kb on + strand, within CCNA_01169 at 1288.315 kb on - strand, within CCNA_01169 at 1288.327 kb on - strand, within CCNA_01169 at 1288.380 kb on + strand, within CCNA_01169 at 1288.380 kb on + strand, within CCNA_01169 at 1288.416 kb on + strand, within CCNA_01169 at 1288.416 kb on + strand, within CCNA_01169 at 1288.418 kb on - strand, within CCNA_01169 at 1288.522 kb on + strand, within CCNA_01169 at 1288.550 kb on + strand, within CCNA_01169 at 1288.550 kb on + strand, within CCNA_01169 at 1288.569 kb on + strand, within CCNA_01169 at 1288.569 kb on + strand, within CCNA_01169 at 1288.569 kb on + strand, within CCNA_01169 at 1288.620 kb on + strand at 1288.662 kb on - strand at 1288.669 kb on + strand at 1288.669 kb on + strand at 1288.679 kb on + strand at 1288.682 kb on - strand at 1288.716 kb on + strand at 1288.716 kb on + strand at 1288.716 kb on + strand at 1288.716 kb on + strand at 1288.801 kb on - strand at 1288.818 kb on + strand at 1288.818 kb on + strand at 1288.826 kb on - strand at 1288.826 kb on - strand at 1288.838 kb on + strand at 1288.839 kb on + strand at 1288.847 kb on - strand at 1288.847 kb on - strand at 1288.855 kb on - strand at 1288.871 kb on - strand at 1288.874 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.894 kb on + strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.902 kb on - strand at 1288.909 kb on + strand at 1288.909 kb on + strand at 1288.933 kb on + strand at 1288.933 kb on + strand at 1288.941 kb on - strand at 1289.031 kb on + strand, within CCNA_01170 at 1289.036 kb on + strand, within CCNA_01170 at 1289.139 kb on + strand, within CCNA_01170 at 1289.139 kb on + strand, within CCNA_01170 at 1289.170 kb on + strand, within CCNA_01170 at 1289.170 kb on + strand, within CCNA_01170 at 1289.170 kb on + strand, within CCNA_01170 at 1289.178 kb on - strand, within CCNA_01170 at 1289.178 kb on - strand, within CCNA_01170 at 1289.178 kb on - strand, within CCNA_01170 at 1289.203 kb on + strand, within CCNA_01170 at 1289.211 kb on - strand, within CCNA_01170 at 1289.216 kb on - strand, within CCNA_01170 at 1289.216 kb on - strand, within CCNA_01170 at 1289.216 kb on - strand, within CCNA_01170 at 1289.232 kb on + strand, within CCNA_01170 at 1289.236 kb on + strand, within CCNA_01170 at 1289.275 kb on + strand, within CCNA_01170 at 1289.342 kb on + strand, within CCNA_01170 at 1289.342 kb on + strand, within CCNA_01170 at 1289.342 kb on + strand, within CCNA_01170 at 1289.350 kb on - strand, within CCNA_01170 at 1289.377 kb on + strand, within CCNA_01170 at 1289.492 kb on + strand, within CCNA_01170 at 1289.492 kb on + strand, within CCNA_01170 at 1289.492 kb on + strand, within CCNA_01170 at 1289.516 kb on + strand, within CCNA_01170 at 1289.553 kb on + strand, within CCNA_01170 at 1289.563 kb on + strand, within CCNA_01170 at 1289.609 kb on - strand, within CCNA_01170 at 1289.614 kb on - strand, within CCNA_01170 at 1289.629 kb on + strand, within CCNA_01170 at 1289.664 kb on + strand, within CCNA_01170 at 1289.672 kb on - strand at 1289.672 kb on - strand, within CCNA_01170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,287,012 - CCNA_01168 0.36 +0.2 1,287,193 + CCNA_01168 0.51 +0.5 1,287,246 - CCNA_01168 0.55 -0.1 1,287,766 + -0.4 1,287,790 + +1.3 1,287,813 - -1.1 1,287,830 + -1.0 1,287,830 + -0.1 1,287,837 + -1.1 1,287,838 - +1.0 1,287,838 - -0.4 1,287,838 - -0.6 1,287,877 + -0.1 1,287,885 - +0.5 1,287,885 - -0.1 1,287,933 + +1.0 1,287,947 - +1.1 1,288,035 + CCNA_01169 0.19 -2.0 1,288,057 + CCNA_01169 0.22 -1.4 1,288,075 - CCNA_01169 0.24 -0.9 1,288,089 - CCNA_01169 0.26 -2.1 1,288,145 + CCNA_01169 0.33 -0.9 1,288,148 - CCNA_01169 0.33 -0.6 1,288,168 - CCNA_01169 0.36 +1.3 1,288,190 + CCNA_01169 0.38 +1.1 1,288,205 + CCNA_01169 0.40 +0.5 1,288,237 - CCNA_01169 0.44 -0.7 1,288,246 + +1.5 1,288,307 + CCNA_01169 0.53 -1.3 1,288,315 - CCNA_01169 0.54 -3.4 1,288,327 - CCNA_01169 0.55 -0.8 1,288,380 + CCNA_01169 0.62 -0.5 1,288,380 + CCNA_01169 0.62 -0.1 1,288,416 + CCNA_01169 0.66 +0.7 1,288,416 + CCNA_01169 0.66 -0.4 1,288,418 - CCNA_01169 0.66 -1.1 1,288,522 + CCNA_01169 0.79 -0.2 1,288,550 + CCNA_01169 0.83 -0.8 1,288,550 + CCNA_01169 0.83 +0.8 1,288,569 + CCNA_01169 0.85 +0.1 1,288,569 + CCNA_01169 0.85 -0.6 1,288,569 + CCNA_01169 0.85 -2.1 1,288,620 + +0.5 1,288,662 - -0.2 1,288,669 + -0.1 1,288,669 + -0.3 1,288,679 + -0.4 1,288,682 - -0.2 1,288,716 + -1.0 1,288,716 + -1.1 1,288,716 + +0.3 1,288,716 + +1.2 1,288,801 - +0.9 1,288,818 + -0.7 1,288,818 + -0.5 1,288,826 - +0.3 1,288,826 - -1.6 1,288,838 + -0.4 1,288,839 + +0.3 1,288,847 - -0.4 1,288,847 - -0.1 1,288,855 - +0.5 1,288,871 - +0.2 1,288,874 + +0.3 1,288,894 + -1.5 1,288,894 + +0.4 1,288,894 + +0.4 1,288,894 + -1.1 1,288,894 + +0.1 1,288,894 + +0.9 1,288,894 + -0.6 1,288,894 + -1.4 1,288,894 + +0.3 1,288,894 + -1.4 1,288,894 + -0.5 1,288,902 - +1.7 1,288,902 - +0.9 1,288,902 - -1.5 1,288,902 - +0.5 1,288,902 - -0.5 1,288,902 - +3.1 1,288,902 - -0.5 1,288,909 + -0.1 1,288,909 + -1.8 1,288,933 + +0.1 1,288,933 + +0.9 1,288,941 - -0.6 1,289,031 + CCNA_01170 0.12 -2.6 1,289,036 + CCNA_01170 0.12 -0.6 1,289,139 + CCNA_01170 0.16 +0.5 1,289,139 + CCNA_01170 0.16 -1.4 1,289,170 + CCNA_01170 0.17 +1.3 1,289,170 + CCNA_01170 0.17 -0.1 1,289,170 + CCNA_01170 0.17 -0.0 1,289,178 - CCNA_01170 0.18 -0.2 1,289,178 - CCNA_01170 0.18 -2.3 1,289,178 - CCNA_01170 0.18 -1.8 1,289,203 + CCNA_01170 0.19 +0.8 1,289,211 - CCNA_01170 0.19 +0.6 1,289,216 - CCNA_01170 0.19 -0.1 1,289,216 - CCNA_01170 0.19 -0.8 1,289,216 - CCNA_01170 0.19 -0.1 1,289,232 + CCNA_01170 0.20 -1.0 1,289,236 + CCNA_01170 0.20 -1.3 1,289,275 + CCNA_01170 0.21 -0.9 1,289,342 + CCNA_01170 0.24 -1.4 1,289,342 + CCNA_01170 0.24 -1.4 1,289,342 + CCNA_01170 0.24 -0.8 1,289,350 - CCNA_01170 0.24 -1.4 1,289,377 + CCNA_01170 0.25 +0.6 1,289,492 + CCNA_01170 0.30 +0.3 1,289,492 + CCNA_01170 0.30 -0.5 1,289,492 + CCNA_01170 0.30 -0.1 1,289,516 + CCNA_01170 0.30 -1.1 1,289,553 + CCNA_01170 0.32 +0.6 1,289,563 + CCNA_01170 0.32 +1.5 1,289,609 - CCNA_01170 0.34 -2.2 1,289,614 - CCNA_01170 0.34 -0.6 1,289,629 + CCNA_01170 0.35 -1.0 1,289,664 + CCNA_01170 0.36 +0.2 1,289,672 - +1.1 1,289,672 - CCNA_01170 0.36 -1.5
Or see this region's nucleotide sequence