Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS06330 and CA265_RS06335 are separated by 155 nucleotides CA265_RS06335 and CA265_RS06340 are separated by 372 nucleotides
CA265_RS06330: CA265_RS06330 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,553,943 to 1,555,778
_RS06330
CA265_RS06335: CA265_RS06335 - hypothetical protein, at 1,555,934 to 1,556,407
_RS06335
CA265_RS06340: CA265_RS06340 - hypothetical protein, at 1,556,780 to 1,557,742
_RS06340
Position (kb) 1555
1556
1557 Strain fitness (log2 ratio) -1
0
1 at 1555.745 kb on + strand at 1555.776 kb on + strand at 1555.810 kb on - strand at 1555.838 kb on - strand at 1555.882 kb on + strand at 1555.896 kb on - strand at 1555.936 kb on - strand at 1556.043 kb on - strand, within CA265_RS06335 at 1556.210 kb on + strand, within CA265_RS06335 at 1556.239 kb on + strand, within CA265_RS06335 at 1556.240 kb on - strand, within CA265_RS06335 at 1556.245 kb on + strand, within CA265_RS06335 at 1556.266 kb on + strand, within CA265_RS06335 at 1556.266 kb on + strand, within CA265_RS06335 at 1556.266 kb on + strand, within CA265_RS06335 at 1556.297 kb on - strand, within CA265_RS06335 at 1556.297 kb on - strand, within CA265_RS06335 at 1556.312 kb on - strand, within CA265_RS06335 at 1556.312 kb on - strand, within CA265_RS06335 at 1556.349 kb on - strand, within CA265_RS06335 at 1556.422 kb on - strand at 1556.422 kb on - strand at 1556.432 kb on - strand at 1556.471 kb on - strand at 1556.514 kb on + strand at 1556.515 kb on - strand at 1556.520 kb on + strand at 1556.651 kb on - strand at 1556.651 kb on - strand at 1556.651 kb on - strand at 1556.656 kb on - strand at 1556.741 kb on - strand at 1556.793 kb on + strand at 1556.803 kb on + strand at 1556.804 kb on - strand at 1556.807 kb on + strand at 1556.808 kb on - strand at 1556.857 kb on + strand at 1556.857 kb on + strand at 1556.857 kb on + strand at 1556.857 kb on + strand at 1556.858 kb on - strand at 1556.858 kb on - strand at 1556.861 kb on + strand at 1557.014 kb on + strand, within CA265_RS06340 at 1557.101 kb on + strand, within CA265_RS06340 at 1557.101 kb on + strand, within CA265_RS06340 at 1557.115 kb on + strand, within CA265_RS06340 at 1557.127 kb on + strand, within CA265_RS06340 at 1557.127 kb on + strand, within CA265_RS06340 at 1557.130 kb on + strand, within CA265_RS06340 at 1557.163 kb on - strand, within CA265_RS06340 at 1557.168 kb on - strand, within CA265_RS06340 at 1557.193 kb on + strand, within CA265_RS06340 at 1557.242 kb on - strand, within CA265_RS06340 at 1557.306 kb on + strand, within CA265_RS06340 at 1557.366 kb on - strand, within CA265_RS06340 at 1557.367 kb on + strand, within CA265_RS06340 at 1557.367 kb on + strand, within CA265_RS06340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 1,555,745 + -0.1 1,555,776 + +0.1 1,555,810 - +0.1 1,555,838 - +0.2 1,555,882 + +0.1 1,555,896 - -0.3 1,555,936 - -0.3 1,556,043 - CA265_RS06335 0.23 -0.3 1,556,210 + CA265_RS06335 0.58 +0.6 1,556,239 + CA265_RS06335 0.64 +1.1 1,556,240 - CA265_RS06335 0.65 +0.5 1,556,245 + CA265_RS06335 0.66 +0.2 1,556,266 + CA265_RS06335 0.70 +0.4 1,556,266 + CA265_RS06335 0.70 -0.6 1,556,266 + CA265_RS06335 0.70 -0.1 1,556,297 - CA265_RS06335 0.77 -0.7 1,556,297 - CA265_RS06335 0.77 -0.0 1,556,312 - CA265_RS06335 0.80 -0.5 1,556,312 - CA265_RS06335 0.80 -0.4 1,556,349 - CA265_RS06335 0.88 +0.2 1,556,422 - -0.6 1,556,422 - -0.6 1,556,432 - +0.7 1,556,471 - -1.1 1,556,514 + +0.3 1,556,515 - -0.9 1,556,520 + -0.0 1,556,651 - -0.5 1,556,651 - -0.0 1,556,651 - -0.3 1,556,656 - -0.7 1,556,741 - +0.1 1,556,793 + -1.3 1,556,803 + -0.1 1,556,804 - -0.1 1,556,807 + +0.4 1,556,808 - +0.3 1,556,857 + -1.3 1,556,857 + +0.8 1,556,857 + +0.3 1,556,857 + +1.1 1,556,858 - -0.9 1,556,858 - -0.3 1,556,861 + +0.3 1,557,014 + CA265_RS06340 0.24 -0.5 1,557,101 + CA265_RS06340 0.33 +0.1 1,557,101 + CA265_RS06340 0.33 +0.0 1,557,115 + CA265_RS06340 0.35 +0.1 1,557,127 + CA265_RS06340 0.36 +0.4 1,557,127 + CA265_RS06340 0.36 -0.4 1,557,130 + CA265_RS06340 0.36 -1.1 1,557,163 - CA265_RS06340 0.40 +0.3 1,557,168 - CA265_RS06340 0.40 +0.7 1,557,193 + CA265_RS06340 0.43 -0.3 1,557,242 - CA265_RS06340 0.48 +0.4 1,557,306 + CA265_RS06340 0.55 -0.9 1,557,366 - CA265_RS06340 0.61 -0.4 1,557,367 + CA265_RS06340 0.61 -0.9 1,557,367 + CA265_RS06340 0.61 -0.6
Or see this region's nucleotide sequence