Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18495

Experiment: reconstituted MRS with D-Galactose 56 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with D-Galactose 56 mM
1,935,839	-		BBR_RS18490	0.43	-1.2
1,935,839	-		BBR_RS18490	0.43	+0.2
1,935,845	-		BBR_RS18490	0.43	+1.6
1,935,855	+		BBR_RS18490	0.44	+0.2
1,935,855	+		BBR_RS18490	0.44	-0.3
1,935,855	+		BBR_RS18490	0.44	-0.2
1,935,863	-		BBR_RS18490	0.45	-0.9
1,935,863	-		BBR_RS18490	0.45	+0.1
1,935,930	+		BBR_RS18490	0.50	-0.3
1,935,930	+		BBR_RS18490	0.50	+0.2
1,935,930	+		BBR_RS18490	0.50	+0.5
1,935,930	+		BBR_RS18490	0.50	+0.2
1,935,938	-		BBR_RS18490	0.50	-0.1
1,935,973	-		BBR_RS18490	0.53	+0.6
1,935,988	-		BBR_RS18490	0.54	+0.8
1,935,996	+		BBR_RS18490	0.55	+0.0
1,936,004	-		BBR_RS18490	0.55	+0.0
1,936,008	+		BBR_RS18490	0.56	-0.0
1,936,011	-		BBR_RS18490	0.56	-0.4
1,936,016	-		BBR_RS18490	0.56	+1.1
1,936,016	-		BBR_RS18490	0.56	+0.1
1,936,018	+		BBR_RS18490	0.56	-0.5
1,936,018	+		BBR_RS18490	0.56	-0.7
1,936,033	+		BBR_RS18490	0.58	+0.4
1,936,135	-		BBR_RS18490	0.65	+0.3
1,936,154	+		BBR_RS18490	0.67	+0.3
1,936,156	-		BBR_RS18490	0.67	-0.8
1,936,162	-		BBR_RS18490	0.67	-0.1
1,936,163	-		BBR_RS18490	0.67	-0.4
1,936,189	+		BBR_RS18490	0.69	-0.5
1,936,202	-		BBR_RS18490	0.70	-1.0
1,936,202	-		BBR_RS18490	0.70	+0.3
1,936,233	-		BBR_RS18490	0.73	+1.1
1,936,236	+		BBR_RS18490	0.73	-0.9
1,936,253	+		BBR_RS18490	0.74	+0.6
1,936,253	+		BBR_RS18490	0.74	-0.8
1,936,253	+		BBR_RS18490	0.74	-0.4
1,936,253	+		BBR_RS18490	0.74	+0.3
1,936,259	-		BBR_RS18490	0.75	+1.5
1,936,260	+		BBR_RS18490	0.75	-0.7
1,936,265	+		BBR_RS18490	0.75	-0.3
1,936,271	+		BBR_RS18490	0.76	+0.3
1,936,273	-		BBR_RS18490	0.76	+0.8
1,936,273	-		BBR_RS18490	0.76	+0.5
1,936,315	-		BBR_RS18490	0.79	+0.2
1,936,324	+		BBR_RS18490	0.80	-0.5
1,936,332	-		BBR_RS18490	0.80	+0.2
1,936,332	-		BBR_RS18490	0.80	-0.1
1,936,364	+		BBR_RS18490	0.83	-0.2
1,936,364	+		BBR_RS18490	0.83	+0.4
1,936,367	-		BBR_RS18490	0.83	+0.4
1,936,367	-		BBR_RS18490	0.83	-0.9
1,936,372	-		BBR_RS18490	0.83	+1.0
1,936,372	-		BBR_RS18490	0.83	-0.8
1,936,374	+		BBR_RS18490	0.83	+0.3
1,936,374	+		BBR_RS18490	0.83	-0.8
1,936,374	+		BBR_RS18490	0.83	-0.7
1,936,374	+		BBR_RS18490	0.83	-0.7
1,936,377	-		BBR_RS18490	0.84	+0.3
1,936,382	-		BBR_RS18490	0.84	+0.2
1,936,390	-		BBR_RS18490	0.85	-0.9
1,936,390	-		BBR_RS18490	0.85	-0.3
1,936,392	-		BBR_RS18490	0.85	+0.1
1,936,416	-		BBR_RS18490	0.87	+0.2
1,936,416	-		BBR_RS18490	0.87	-0.3
1,936,433	-		BBR_RS18490	0.88	-0.2
1,936,442	+		BBR_RS18490	0.88	-0.2
1,936,442	+		BBR_RS18490	0.88	-0.1
1,936,450	-		BBR_RS18490	0.89	+0.3
1,936,450	-		BBR_RS18490	0.89	+0.1
1,936,450	-		BBR_RS18490	0.89	-0.2
1,936,461	+		BBR_RS18490	0.90	-0.5
1,936,477	+				-1.9
1,936,489	+				+0.7
1,936,497	-				-0.6
1,936,529	+				+0.0
1,936,529	+				-0.9
1,936,544	-				+1.4
1,936,565	+				-0.1
1,936,573	-				+0.5
1,936,592	-				-0.0
1,936,628	-				+0.0
1,936,628	-				-0.3
1,936,719	+				+0.2
1,936,730	-				+0.5
1,936,734	+				-1.4
1,936,734	+				-0.2
1,936,735	-				-1.5
1,936,742	-				+0.2
1,936,742	-				+0.4
1,936,821	+				+0.5
1,936,824	-				+0.4
1,936,824	-				-0.9
1,936,826	-				+1.3
1,936,844	+				-2.1
1,936,857	+				+1.2
1,936,872	+				+0.5
1,936,874	+				+0.7
1,936,886	+				-0.1
1,936,930	-				+1.3
1,936,948	-		BBR_RS18495	0.11	-1.4
1,936,948	-		BBR_RS18495	0.11	+1.0
1,936,951	+		BBR_RS18495	0.11	+0.3
1,936,959	-		BBR_RS18495	0.11	-0.1
1,936,963	+		BBR_RS18495	0.12	+0.2
1,936,967	-		BBR_RS18495	0.12	+1.2
1,937,013	-		BBR_RS18495	0.16	+1.5
1,937,033	+		BBR_RS18495	0.18	+0.2
1,937,041	-		BBR_RS18495	0.18	+0.5
1,937,056	-		BBR_RS18495	0.20	+0.3
1,937,061	+		BBR_RS18495	0.20	+0.7
1,937,062	-		BBR_RS18495	0.20	-0.0
1,937,145	-		BBR_RS18495	0.27	+1.1
1,937,157	+		BBR_RS18495	0.28	+1.3
1,937,211	-		BBR_RS18495	0.33	-0.8
1,937,238	+		BBR_RS18495	0.35	+0.5
1,937,323	+		BBR_RS18495	0.42	-0.5
1,937,323	+		BBR_RS18495	0.42	+0.5
1,937,351	-		BBR_RS18495	0.45	+1.1
1,937,445	-		BBR_RS18495	0.53	+0.2
1,937,453	-		BBR_RS18495	0.53	+0.5
1,937,467	+		BBR_RS18495	0.55	+0.6
1,937,535	+		BBR_RS18495	0.60	-1.0
1,937,591	+		BBR_RS18495	0.65	+1.2
1,937,623	+		BBR_RS18495	0.68	+1.1
1,937,654	+		BBR_RS18495	0.71	+1.3
1,937,662	-		BBR_RS18495	0.71	+0.9
1,937,671	+		BBR_RS18495	0.72	+0.5
1,937,696	-		BBR_RS18495	0.74	+1.2
1,937,696	-		BBR_RS18495	0.74	-0.2
1,937,709	-		BBR_RS18495	0.75	+0.5
1,937,735	+		BBR_RS18495	0.77	+0.2
1,937,735	+		BBR_RS18495	0.77	+0.5
1,937,742	+		BBR_RS18495	0.78	+0.9
1,937,742	+		BBR_RS18495	0.78	+0.8
1,937,744	+		BBR_RS18495	0.78	+0.6
1,937,748	-		BBR_RS18495	0.79	+1.1
1,937,750	-		BBR_RS18495	0.79	+1.2
1,937,750	-		BBR_RS18495	0.79	+0.5
1,937,768	+		BBR_RS18495	0.80	+0.0
1,937,768	+		BBR_RS18495	0.80	+0.9
1,937,768	+		BBR_RS18495	0.80	+0.8
1,937,776	-		BBR_RS18495	0.81	+0.2
1,937,776	-		BBR_RS18495	0.81	+0.5
1,937,824	+		BBR_RS18495	0.85	+0.7
1,937,824	+		BBR_RS18495	0.85	+0.2
1,937,832	-		BBR_RS18495	0.86	+0.0
1,937,834	-		BBR_RS18495	0.86	+1.5
1,937,834	-		BBR_RS18495	0.86	+0.7
1,937,847	-		BBR_RS18495	0.87	+1.0
1,937,865	+		BBR_RS18495	0.89	+0.7
1,937,872	+		BBR_RS18495	0.89	-0.1
1,937,908	+				-1.2
1,937,908	+				-0.8
1,937,908	+				+0.7
1,937,916	-				+0.1
1,937,943	-				+1.2
1,937,950	+				+0.3
1,937,950	+				-1.3
1,937,950	+				-0.1
1,937,950	+				+0.2
1,937,950	+				+0.2
1,937,951	+				+1.0
1,937,958	-				+0.2
1,937,958	-				+0.9
1,937,958	-				+1.6
1,937,966	+				+0.3
1,937,977	+				-0.3
1,937,990	-				-0.3
1,937,992	+				+0.3
1,937,992	+				-0.2
1,938,000	-				-1.1
1,938,005	-				+0.2
1,938,025	-				-0.1
1,938,030	-				+0.0
1,938,030	-				+0.2
1,938,036	-				+0.0
1,938,036	-				-0.0
1,938,064	+				-0.0
1,938,074	+				+0.2
1,938,083	+				+0.4
1,938,091	-				+0.4
1,938,127	-				-0.1
1,938,130	+				-0.9
1,938,132	-				+1.6
1,938,142	+				+0.6
1,938,151	-				+0.0
1,938,152	-				-0.7
1,938,170	-				-0.9
1,938,176	-				+0.4
1,938,178	+				-0.8
1,938,188	+				+0.0
1,938,188	+				+0.1
1,938,191	-				+0.0
1,938,196	-				-0.2
1,938,196	-				-0.1
1,938,278	-				+0.7
1,938,286	-				-0.3
1,938,306	+				+0.5
1,938,314	-				+1.0
1,938,314	-				-0.1
1,938,327	+				-0.1
1,938,336	-				+1.0
1,938,336	-				+0.6
1,938,353	-				+0.6
1,938,372	-				-0.5
1,938,372	-				+0.3
1,938,391	-				-0.6
1,938,403	+				+0.5
1,938,458	+		BBR_RS18500	0.10	+0.3
1,938,458	+		BBR_RS18500	0.10	-0.1
1,938,482	+		BBR_RS18500	0.12	+1.1
1,938,490	-		BBR_RS18500	0.12	+0.5
1,938,490	-		BBR_RS18500	0.12	+0.7
1,938,502	+		BBR_RS18500	0.13	-0.6
1,938,504	-		BBR_RS18500	0.13	+0.4
1,938,507	+		BBR_RS18500	0.13	+1.2
1,938,510	-		BBR_RS18500	0.13	+0.4
1,938,512	-		BBR_RS18500	0.13	+0.1
1,938,514	+		BBR_RS18500	0.13	+0.3
1,938,527	+		BBR_RS18500	0.14	+0.3
1,938,527	+		BBR_RS18500	0.14	+1.0
1,938,572	-		BBR_RS18500	0.16	+0.3
1,938,574	+		BBR_RS18500	0.16	-0.8
1,938,576	+		BBR_RS18500	0.16	-0.5
1,938,584	-		BBR_RS18500	0.17	-0.0
1,938,584	-		BBR_RS18500	0.17	-0.7
1,938,584	-		BBR_RS18500	0.17	+0.2
1,938,601	-		BBR_RS18500	0.18	-0.6
1,938,625	+		BBR_RS18500	0.19	+0.1
1,938,625	+		BBR_RS18500	0.19	-0.5
1,938,625	+		BBR_RS18500	0.19	+0.6
1,938,625	+		BBR_RS18500	0.19	-0.0
1,938,633	-		BBR_RS18500	0.19	-0.2
1,938,633	-		BBR_RS18500	0.19	+0.6
1,938,633	-		BBR_RS18500	0.19	+0.8
1,938,633	-		BBR_RS18500	0.19	-1.0
1,938,698	+		BBR_RS18500	0.22	-0.1
1,938,717	-		BBR_RS18500	0.23	+0.8
1,938,718	-		BBR_RS18500	0.23	-1.7
1,938,719	+		BBR_RS18500	0.23	-0.6
1,938,721	+		BBR_RS18500	0.23	+0.7
1,938,727	-		BBR_RS18500	0.24	+1.0
1,938,729	-		BBR_RS18500	0.24	+0.1
1,938,740	+		BBR_RS18500	0.24	+0.5
1,938,749	-		BBR_RS18500	0.25	-0.4
1,938,763	-		BBR_RS18500	0.26	+0.9
1,938,765	+		BBR_RS18500	0.26	+0.1
1,938,766	+		BBR_RS18500	0.26	-0.2
1,938,771	+		BBR_RS18500	0.26	+0.4
1,938,771	+		BBR_RS18500	0.26	-0.1
1,938,771	+		BBR_RS18500	0.26	+1.2
1,938,774	-		BBR_RS18500	0.26	-0.7
1,938,784	-		BBR_RS18500	0.27	+0.2
1,938,784	-		BBR_RS18500	0.27	+0.0
1,938,786	-		BBR_RS18500	0.27	+0.2
1,938,787	+		BBR_RS18500	0.27	+0.4
1,938,787	+		BBR_RS18500	0.27	-0.1
1,938,811	-		BBR_RS18500	0.28	+0.2
1,938,817	-		BBR_RS18500	0.28	-0.5
1,938,824	+		BBR_RS18500	0.29	+0.3
1,938,832	-		BBR_RS18500	0.29	-0.1
1,938,832	-		BBR_RS18500	0.29	-0.4
1,938,841	-		BBR_RS18500	0.29	+0.7
1,938,875	-		BBR_RS18500	0.31	+0.6
1,938,894	+		BBR_RS18500	0.32	+0.6
1,938,912	-		BBR_RS18500	0.33	+0.0
1,938,919	-		BBR_RS18500	0.33	-1.0
1,938,919	-		BBR_RS18500	0.33	+0.3
1,938,921	+		BBR_RS18500	0.33	-2.6
1,938,921	+		BBR_RS18500	0.33	+0.4
1,938,921	+		BBR_RS18500	0.33	+0.6
1,938,921	+		BBR_RS18500	0.33	+0.7
1,938,921	+		BBR_RS18500	0.33	-0.3
1,938,921	+		BBR_RS18500	0.33	+0.4
1,938,921	+		BBR_RS18500	0.33	-0.4
1,938,921	+		BBR_RS18500	0.33	-0.2
1,938,921	+		BBR_RS18500	0.33	-0.2
1,938,926	+		BBR_RS18500	0.34	+0.0
1,938,929	-		BBR_RS18500	0.34	+0.8
1,938,929	-		BBR_RS18500	0.34	+0.8
1,938,929	-		BBR_RS18500	0.34	+0.2
1,938,929	-		BBR_RS18500	0.34	+0.7
1,938,929	-		BBR_RS18500	0.34	+0.6
1,938,929	-		BBR_RS18500	0.34	+1.8
1,938,929	-		BBR_RS18500	0.34	+0.2
1,938,929	-		BBR_RS18500	0.34	-0.8
1,938,934	-		BBR_RS18500	0.34	+0.7
1,938,949	-		BBR_RS18500	0.35	+0.7
1,938,953	-		BBR_RS18500	0.35	-0.2
1,938,969	+		BBR_RS18500	0.36	-1.3
1,938,995	+		BBR_RS18500	0.37	+0.7
1,938,995	+		BBR_RS18500	0.37	+0.8