Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3298

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3297 and Ac3H11_3298 are separated by 201 nucleotidesAc3H11_3298 and Ac3H11_3299 are separated by 57 nucleotidesAc3H11_3299 and Ac3H11_3300 are separated by 195 nucleotidesAc3H11_3300 and Ac3H11_3301 are separated by 39 nucleotides Ac3H11_3297 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 31,369 to 32,433 _3297 Ac3H11_3298 - transcriptional regulator, putative, at 32,635 to 33,492 _3298 Ac3H11_3299 - hypothetical protein, at 33,550 to 33,711 _3299 Ac3H11_3300 - hypothetical protein, at 33,907 to 34,257 _3300 Ac3H11_3301 - Predicted membrane protein, at 34,297 to 34,674 _3301 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.802 kb on + strand, within Ac3H11_3297at 31.802 kb on + strand, within Ac3H11_3297at 31.907 kb on + strand, within Ac3H11_3297at 31.907 kb on + strand, within Ac3H11_3297at 31.907 kb on + strand, within Ac3H11_3297at 31.907 kb on + strand, within Ac3H11_3297at 31.908 kb on - strand, within Ac3H11_3297at 31.908 kb on - strand, within Ac3H11_3297at 31.908 kb on - strand, within Ac3H11_3297at 31.908 kb on - strand, within Ac3H11_3297at 31.910 kb on + strand, within Ac3H11_3297at 31.910 kb on + strand, within Ac3H11_3297at 31.910 kb on + strand, within Ac3H11_3297at 31.911 kb on - strand, within Ac3H11_3297at 31.911 kb on - strand, within Ac3H11_3297at 31.911 kb on - strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.039 kb on + strand, within Ac3H11_3297at 32.040 kb on - strand, within Ac3H11_3297at 32.040 kb on - strand, within Ac3H11_3297at 32.040 kb on - strand, within Ac3H11_3297at 32.040 kb on - strand, within Ac3H11_3297at 32.111 kb on + strand, within Ac3H11_3297at 32.111 kb on + strand, within Ac3H11_3297at 32.111 kb on + strand, within Ac3H11_3297at 32.112 kb on - strand, within Ac3H11_3297at 32.112 kb on - strand, within Ac3H11_3297at 32.112 kb on - strand, within Ac3H11_3297at 32.181 kb on - strand, within Ac3H11_3297at 32.252 kb on + strand, within Ac3H11_3297at 32.253 kb on - strand, within Ac3H11_3297at 32.297 kb on + strand, within Ac3H11_3297at 32.298 kb on - strand, within Ac3H11_3297at 32.298 kb on - strand, within Ac3H11_3297at 32.298 kb on - strand, within Ac3H11_3297at 32.313 kb on - strand, within Ac3H11_3297at 32.417 kb on + strandat 32.418 kb on - strandat 32.433 kb on + strandat 32.434 kb on - strandat 32.434 kb on - strandat 32.442 kb on - strandat 32.442 kb on - strandat 32.446 kb on + strandat 32.446 kb on + strandat 32.447 kb on - strandat 32.447 kb on - strandat 32.447 kb on - strandat 32.532 kb on + strandat 32.532 kb on + strandat 32.532 kb on + strandat 32.533 kb on - strandat 32.539 kb on - strandat 32.539 kb on - strandat 32.628 kb on + strandat 32.628 kb on + strandat 32.629 kb on - strandat 32.629 kb on - strandat 32.770 kb on + strand, within Ac3H11_3298at 32.770 kb on + strand, within Ac3H11_3298at 32.771 kb on - strand, within Ac3H11_3298at 32.771 kb on - strand, within Ac3H11_3298at 32.771 kb on - strand, within Ac3H11_3298at 32.938 kb on + strand, within Ac3H11_3298at 32.938 kb on + strand, within Ac3H11_3298at 32.938 kb on + strand, within Ac3H11_3298at 32.938 kb on + strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 32.939 kb on - strand, within Ac3H11_3298at 33.056 kb on + strand, within Ac3H11_3298at 33.056 kb on + strand, within Ac3H11_3298at 33.056 kb on + strand, within Ac3H11_3298at 33.056 kb on + strand, within Ac3H11_3298at 33.056 kb on + strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.057 kb on - strand, within Ac3H11_3298at 33.094 kb on + strand, within Ac3H11_3298at 33.095 kb on - strand, within Ac3H11_3298at 33.130 kb on + strand, within Ac3H11_3298at 33.130 kb on + strand, within Ac3H11_3298at 33.130 kb on + strand, within Ac3H11_3298at 33.131 kb on - strand, within Ac3H11_3298at 33.131 kb on - strand, within Ac3H11_3298at 33.131 kb on - strand, within Ac3H11_3298at 33.131 kb on - strand, within Ac3H11_3298at 33.146 kb on + strand, within Ac3H11_3298at 33.146 kb on + strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.147 kb on - strand, within Ac3H11_3298at 33.286 kb on + strand, within Ac3H11_3298at 33.286 kb on + strand, within Ac3H11_3298at 33.287 kb on - strand, within Ac3H11_3298at 33.640 kb on + strand, within Ac3H11_3299at 33.640 kb on + strand, within Ac3H11_3299at 33.640 kb on + strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.641 kb on - strand, within Ac3H11_3299at 33.743 kb on - strandat 33.743 kb on - strandat 33.743 kb on - strandat 33.765 kb on + strandat 33.765 kb on + strandat 33.765 kb on + strandat 33.765 kb on + strandat 33.766 kb on - strandat 33.817 kb on - strandat 33.817 kb on - strandat 33.817 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.864 kb on - strandat 33.900 kb on + strandat 33.900 kb on + strandat 33.900 kb on + strandat 33.901 kb on - strandat 33.901 kb on - strandat 33.901 kb on - strandat 33.901 kb on - strandat 33.901 kb on - strandat 33.901 kb on - strandat 33.913 kb on + strandat 33.913 kb on + strandat 33.913 kb on + strandat 33.914 kb on - strandat 33.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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31,802 + Ac3H11_3297 0.41 +0.3
31,802 + Ac3H11_3297 0.41 +0.6
31,907 + Ac3H11_3297 0.51 -0.1
31,907 + Ac3H11_3297 0.51 +0.4
31,907 + Ac3H11_3297 0.51 -0.4
31,907 + Ac3H11_3297 0.51 -1.6
31,908 - Ac3H11_3297 0.51 -0.9
31,908 - Ac3H11_3297 0.51 -0.2
31,908 - Ac3H11_3297 0.51 +0.1
31,908 - Ac3H11_3297 0.51 -0.6
31,910 + Ac3H11_3297 0.51 -1.5
31,910 + Ac3H11_3297 0.51 -0.9
31,910 + Ac3H11_3297 0.51 +0.5
31,911 - Ac3H11_3297 0.51 +0.3
31,911 - Ac3H11_3297 0.51 -0.8
31,911 - Ac3H11_3297 0.51 -0.5
32,039 + Ac3H11_3297 0.63 -0.9
32,039 + Ac3H11_3297 0.63 +1.9
32,039 + Ac3H11_3297 0.63 +0.6
32,039 + Ac3H11_3297 0.63 +1.1
32,039 + Ac3H11_3297 0.63 +1.4
32,039 + Ac3H11_3297 0.63 +0.3
32,039 + Ac3H11_3297 0.63 +1.1
32,039 + Ac3H11_3297 0.63 -0.1
32,039 + Ac3H11_3297 0.63 -0.8
32,039 + Ac3H11_3297 0.63 -0.1
32,039 + Ac3H11_3297 0.63 -0.0
32,039 + Ac3H11_3297 0.63 -2.0
32,039 + Ac3H11_3297 0.63 -0.0
32,039 + Ac3H11_3297 0.63 -0.2
32,039 + Ac3H11_3297 0.63 +1.2
32,040 - Ac3H11_3297 0.63 +0.9
32,040 - Ac3H11_3297 0.63 +1.1
32,040 - Ac3H11_3297 0.63 +0.9
32,040 - Ac3H11_3297 0.63 -0.5
32,111 + Ac3H11_3297 0.70 -2.9
32,111 + Ac3H11_3297 0.70 +0.9
32,111 + Ac3H11_3297 0.70 -0.3
32,112 - Ac3H11_3297 0.70 +0.0
32,112 - Ac3H11_3297 0.70 -2.7
32,112 - Ac3H11_3297 0.70 +0.9
32,181 - Ac3H11_3297 0.76 -0.2
32,252 + Ac3H11_3297 0.83 -1.7
32,253 - Ac3H11_3297 0.83 +0.6
32,297 + Ac3H11_3297 0.87 +0.1
32,298 - Ac3H11_3297 0.87 +0.1
32,298 - Ac3H11_3297 0.87 +0.3
32,298 - Ac3H11_3297 0.87 +0.3
32,313 - Ac3H11_3297 0.89 -1.6
32,417 + +0.3
32,418 - +0.8
32,433 + -0.4
32,434 - -0.7
32,434 - +0.3
32,442 - +0.4
32,442 - -0.7
32,446 + -0.4
32,446 + -0.9
32,447 - +0.7
32,447 - +2.3
32,447 - +0.4
32,532 + -1.0
32,532 + +0.1
32,532 + +0.9
32,533 - +0.2
32,539 - -0.1
32,539 - -0.5
32,628 + -1.0
32,628 + +0.0
32,629 - -1.0
32,629 - +0.3
32,770 + Ac3H11_3298 0.16 -1.2
32,770 + Ac3H11_3298 0.16 -0.5
32,771 - Ac3H11_3298 0.16 +0.1
32,771 - Ac3H11_3298 0.16 -1.3
32,771 - Ac3H11_3298 0.16 -2.0
32,938 + Ac3H11_3298 0.35 -1.2
32,938 + Ac3H11_3298 0.35 +1.4
32,938 + Ac3H11_3298 0.35 +0.5
32,938 + Ac3H11_3298 0.35 -0.2
32,939 - Ac3H11_3298 0.35 +0.0
32,939 - Ac3H11_3298 0.35 -0.6
32,939 - Ac3H11_3298 0.35 +0.6
32,939 - Ac3H11_3298 0.35 +0.1
32,939 - Ac3H11_3298 0.35 -0.0
32,939 - Ac3H11_3298 0.35 +1.1
33,056 + Ac3H11_3298 0.49 +1.2
33,056 + Ac3H11_3298 0.49 -0.3
33,056 + Ac3H11_3298 0.49 +0.5
33,056 + Ac3H11_3298 0.49 -0.2
33,056 + Ac3H11_3298 0.49 -0.4
33,057 - Ac3H11_3298 0.49 -0.8
33,057 - Ac3H11_3298 0.49 -0.6
33,057 - Ac3H11_3298 0.49 -0.3
33,057 - Ac3H11_3298 0.49 -1.0
33,057 - Ac3H11_3298 0.49 +0.6
33,057 - Ac3H11_3298 0.49 -0.5
33,057 - Ac3H11_3298 0.49 -2.0
33,057 - Ac3H11_3298 0.49 +0.1
33,094 + Ac3H11_3298 0.53 -0.7
33,095 - Ac3H11_3298 0.54 -0.6
33,130 + Ac3H11_3298 0.58 -0.3
33,130 + Ac3H11_3298 0.58 +1.4
33,130 + Ac3H11_3298 0.58 -0.6
33,131 - Ac3H11_3298 0.58 -0.0
33,131 - Ac3H11_3298 0.58 -0.7
33,131 - Ac3H11_3298 0.58 +0.2
33,131 - Ac3H11_3298 0.58 -0.9
33,146 + Ac3H11_3298 0.60 -0.4
33,146 + Ac3H11_3298 0.60 -0.8
33,147 - Ac3H11_3298 0.60 +0.3
33,147 - Ac3H11_3298 0.60 +0.1
33,147 - Ac3H11_3298 0.60 +0.3
33,147 - Ac3H11_3298 0.60 -0.4
33,147 - Ac3H11_3298 0.60 -1.4
33,147 - Ac3H11_3298 0.60 -1.0
33,286 + Ac3H11_3298 0.76 -1.5
33,286 + Ac3H11_3298 0.76 +0.1
33,287 - Ac3H11_3298 0.76 +0.7
33,640 + Ac3H11_3299 0.56 -0.0
33,640 + Ac3H11_3299 0.56 +0.7
33,640 + Ac3H11_3299 0.56 -0.1
33,641 - Ac3H11_3299 0.56 -0.3
33,641 - Ac3H11_3299 0.56 +0.2
33,641 - Ac3H11_3299 0.56 +0.5
33,641 - Ac3H11_3299 0.56 +0.1
33,641 - Ac3H11_3299 0.56 -1.0
33,641 - Ac3H11_3299 0.56 +0.1
33,743 - -2.2
33,743 - +0.3
33,743 - -0.6
33,765 + +0.1
33,765 + -0.3
33,765 + +1.3
33,765 + -0.9
33,766 - +0.2
33,817 - +0.1
33,817 - +0.5
33,817 - -0.6
33,864 - -0.4
33,864 - +0.7
33,864 - -0.3
33,864 - -1.8
33,864 - +0.7
33,864 - -0.3
33,864 - +0.9
33,864 - +0.3
33,900 + -0.6
33,900 + +1.0
33,900 + +0.3
33,901 - +0.3
33,901 - +1.0
33,901 - -0.4
33,901 - +0.5
33,901 - +1.4
33,901 - -0.6
33,913 + +0.1
33,913 + -1.1
33,913 + -0.1
33,914 - +0.2
33,914 - -0.5

Or see this region's nucleotide sequence