Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1985 and Ac3H11_1986 are separated by 88 nucleotides Ac3H11_1986 and Ac3H11_1987 are separated by 92 nucleotides Ac3H11_1987 and Ac3H11_1988 are separated by 101 nucleotides Ac3H11_1988 and Ac3H11_1989 are separated by 7 nucleotides
Ac3H11_1985 - Metallo-beta-lactamase family protein, at 201,148 to 202,854
_1985
Ac3H11_1986 - Maleate cis-trans isomerase (EC 5.2.1.1), at 202,943 to 203,695
_1986
Ac3H11_1987 - Tricarboxylate transport protein TctC, at 203,788 to 204,750
_1987
Ac3H11_1988 - transcriptional regulator, LysR family, at 204,852 to 205,721
_1988
Ac3H11_1989 - Putative drug efflux protein, at 205,729 to 206,931
_1989
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.947 kb on + strand at 202.948 kb on - strand at 202.948 kb on - strand at 203.253 kb on + strand, within Ac3H11_1986 at 203.253 kb on + strand, within Ac3H11_1986 at 203.253 kb on + strand, within Ac3H11_1986 at 203.254 kb on - strand, within Ac3H11_1986 at 203.284 kb on + strand, within Ac3H11_1986 at 203.284 kb on + strand, within Ac3H11_1986 at 203.284 kb on + strand, within Ac3H11_1986 at 203.284 kb on + strand, within Ac3H11_1986 at 203.284 kb on + strand, within Ac3H11_1986 at 203.285 kb on - strand, within Ac3H11_1986 at 203.286 kb on + strand, within Ac3H11_1986 at 203.286 kb on + strand, within Ac3H11_1986 at 203.287 kb on - strand, within Ac3H11_1986 at 203.287 kb on - strand, within Ac3H11_1986 at 203.287 kb on - strand, within Ac3H11_1986 at 203.464 kb on - strand, within Ac3H11_1986 at 203.682 kb on + strand at 203.682 kb on + strand at 203.683 kb on - strand at 203.832 kb on - strand at 203.879 kb on + strand at 204.209 kb on + strand, within Ac3H11_1987 at 204.296 kb on + strand, within Ac3H11_1987 at 204.297 kb on - strand, within Ac3H11_1987 at 204.297 kb on - strand, within Ac3H11_1987 at 204.297 kb on - strand, within Ac3H11_1987 at 204.297 kb on - strand, within Ac3H11_1987 at 204.327 kb on - strand, within Ac3H11_1987 at 204.327 kb on - strand, within Ac3H11_1987 at 204.470 kb on + strand, within Ac3H11_1987 at 204.480 kb on - strand, within Ac3H11_1987 at 204.497 kb on + strand, within Ac3H11_1987 at 204.497 kb on + strand, within Ac3H11_1987 at 204.497 kb on + strand, within Ac3H11_1987 at 204.497 kb on + strand, within Ac3H11_1987 at 204.530 kb on + strand, within Ac3H11_1987 at 204.680 kb on + strand at 204.784 kb on + strand at 204.817 kb on + strand at 204.847 kb on + strand at 204.873 kb on + strand at 204.874 kb on - strand at 205.041 kb on + strand, within Ac3H11_1988 at 205.041 kb on + strand, within Ac3H11_1988 at 205.042 kb on - strand, within Ac3H11_1988 at 205.042 kb on - strand, within Ac3H11_1988 at 205.042 kb on - strand, within Ac3H11_1988 at 205.042 kb on - strand, within Ac3H11_1988
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 202,947 + +1.6 202,948 - +1.0 202,948 - +0.1 203,253 + Ac3H11_1986 0.41 +1.0 203,253 + Ac3H11_1986 0.41 +0.0 203,253 + Ac3H11_1986 0.41 +1.5 203,254 - Ac3H11_1986 0.41 -0.0 203,284 + Ac3H11_1986 0.45 +0.8 203,284 + Ac3H11_1986 0.45 -0.7 203,284 + Ac3H11_1986 0.45 -0.9 203,284 + Ac3H11_1986 0.45 +0.0 203,284 + Ac3H11_1986 0.45 +0.8 203,285 - Ac3H11_1986 0.45 -0.7 203,286 + Ac3H11_1986 0.46 +0.5 203,286 + Ac3H11_1986 0.46 -0.5 203,287 - Ac3H11_1986 0.46 -2.0 203,287 - Ac3H11_1986 0.46 -1.5 203,287 - Ac3H11_1986 0.46 -0.1 203,464 - Ac3H11_1986 0.69 -2.4 203,682 + -0.6 203,682 + +0.3 203,683 - -0.6 203,832 - -1.2 203,879 + +1.8 204,209 + Ac3H11_1987 0.44 -1.9 204,296 + Ac3H11_1987 0.53 +0.6 204,297 - Ac3H11_1987 0.53 +0.2 204,297 - Ac3H11_1987 0.53 -0.7 204,297 - Ac3H11_1987 0.53 +1.3 204,297 - Ac3H11_1987 0.53 -0.6 204,327 - Ac3H11_1987 0.56 +0.3 204,327 - Ac3H11_1987 0.56 -1.2 204,470 + Ac3H11_1987 0.71 +0.6 204,480 - Ac3H11_1987 0.72 +2.1 204,497 + Ac3H11_1987 0.74 +0.4 204,497 + Ac3H11_1987 0.74 -0.3 204,497 + Ac3H11_1987 0.74 +1.1 204,497 + Ac3H11_1987 0.74 -0.7 204,530 + Ac3H11_1987 0.77 +0.1 204,680 + -0.8 204,784 + -0.7 204,817 + +0.5 204,847 + +0.1 204,873 + -0.5 204,874 - -0.3 205,041 + Ac3H11_1988 0.22 -1.0 205,041 + Ac3H11_1988 0.22 +1.6 205,042 - Ac3H11_1988 0.22 -0.2 205,042 - Ac3H11_1988 0.22 +1.9 205,042 - Ac3H11_1988 0.22 +0.9 205,042 - Ac3H11_1988 0.22 +0.5
Or see this region's nucleotide sequence