Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1934

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1933 and Ac3H11_1934 are separated by 131 nucleotidesAc3H11_1934 and Ac3H11_1935 are separated by 204 nucleotides Ac3H11_1933 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 147,690 to 148,850 _1933 Ac3H11_1934 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 148,982 to 150,148 _1934 Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209 _1935 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 147.986 kb on - strand, within Ac3H11_1933at 148.042 kb on + strand, within Ac3H11_1933at 148.043 kb on - strand, within Ac3H11_1933at 148.399 kb on + strand, within Ac3H11_1933at 148.399 kb on + strand, within Ac3H11_1933at 148.399 kb on + strand, within Ac3H11_1933at 148.399 kb on + strand, within Ac3H11_1933at 148.400 kb on - strand, within Ac3H11_1933at 148.400 kb on - strand, within Ac3H11_1933at 148.400 kb on - strand, within Ac3H11_1933at 148.400 kb on - strand, within Ac3H11_1933at 148.519 kb on + strand, within Ac3H11_1933at 148.519 kb on + strand, within Ac3H11_1933at 148.519 kb on + strand, within Ac3H11_1933at 148.519 kb on + strand, within Ac3H11_1933at 148.520 kb on - strand, within Ac3H11_1933at 148.520 kb on - strand, within Ac3H11_1933at 148.520 kb on - strand, within Ac3H11_1933at 148.520 kb on - strand, within Ac3H11_1933at 148.520 kb on - strand, within Ac3H11_1933at 148.558 kb on + strand, within Ac3H11_1933at 148.558 kb on + strand, within Ac3H11_1933at 148.558 kb on + strand, within Ac3H11_1933at 148.558 kb on + strand, within Ac3H11_1933at 148.558 kb on + strand, within Ac3H11_1933at 148.559 kb on - strand, within Ac3H11_1933at 148.559 kb on - strand, within Ac3H11_1933at 148.640 kb on - strand, within Ac3H11_1933at 148.642 kb on + strand, within Ac3H11_1933at 148.642 kb on + strand, within Ac3H11_1933at 148.642 kb on + strand, within Ac3H11_1933at 148.642 kb on + strand, within Ac3H11_1933at 148.642 kb on + strand, within Ac3H11_1933at 148.669 kb on + strand, within Ac3H11_1933at 148.669 kb on + strand, within Ac3H11_1933at 148.669 kb on + strand, within Ac3H11_1933at 148.670 kb on - strand, within Ac3H11_1933at 148.738 kb on + strandat 148.738 kb on + strandat 148.739 kb on - strandat 148.739 kb on - strandat 148.788 kb on - strandat 148.867 kb on - strandat 148.871 kb on - strandat 148.975 kb on + strandat 148.975 kb on + strandat 148.975 kb on + strandat 148.975 kb on + strandat 148.976 kb on - strandat 148.976 kb on - strandat 148.976 kb on - strandat 148.976 kb on - strandat 148.976 kb on - strandat 148.995 kb on + strandat 148.995 kb on + strandat 148.995 kb on + strandat 148.995 kb on + strandat 148.996 kb on - strandat 148.996 kb on - strandat 149.205 kb on + strand, within Ac3H11_1934at 149.205 kb on + strand, within Ac3H11_1934at 149.206 kb on - strand, within Ac3H11_1934at 149.206 kb on - strand, within Ac3H11_1934at 149.206 kb on - strand, within Ac3H11_1934at 149.206 kb on - strand, within Ac3H11_1934at 149.211 kb on + strand, within Ac3H11_1934at 149.211 kb on + strand, within Ac3H11_1934at 149.211 kb on + strand, within Ac3H11_1934at 149.212 kb on - strand, within Ac3H11_1934at 149.253 kb on + strand, within Ac3H11_1934at 149.254 kb on - strand, within Ac3H11_1934at 149.254 kb on - strand, within Ac3H11_1934at 149.254 kb on - strand, within Ac3H11_1934at 149.298 kb on + strand, within Ac3H11_1934at 149.299 kb on - strand, within Ac3H11_1934at 149.325 kb on + strand, within Ac3H11_1934at 149.325 kb on + strand, within Ac3H11_1934at 149.325 kb on + strand, within Ac3H11_1934at 149.325 kb on + strand, within Ac3H11_1934at 149.326 kb on - strand, within Ac3H11_1934at 149.326 kb on - strand, within Ac3H11_1934at 149.326 kb on - strand, within Ac3H11_1934at 149.326 kb on - strand, within Ac3H11_1934at 149.326 kb on - strand, within Ac3H11_1934at 149.373 kb on + strand, within Ac3H11_1934at 149.374 kb on - strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.535 kb on + strand, within Ac3H11_1934at 149.536 kb on - strand, within Ac3H11_1934at 149.536 kb on - strand, within Ac3H11_1934at 149.625 kb on + strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.626 kb on - strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.694 kb on + strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.695 kb on - strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.697 kb on + strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.698 kb on - strand, within Ac3H11_1934at 149.715 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.739 kb on + strand, within Ac3H11_1934at 149.740 kb on - strand, within Ac3H11_1934at 149.905 kb on - strand, within Ac3H11_1934at 149.923 kb on + strand, within Ac3H11_1934at 149.924 kb on - strand, within Ac3H11_1934at 149.924 kb on - strand, within Ac3H11_1934at 150.194 kb on - strandat 150.195 kb on + strandat 150.195 kb on + strandat 150.195 kb on + strandat 150.196 kb on - strandat 150.196 kb on - strandat 150.354 kb on + strandat 150.360 kb on + strandat 150.361 kb on - strandat 150.361 kb on - strandat 150.361 kb on - strandat 150.384 kb on + strandat 150.385 kb on - strandat 150.570 kb on + strand, within Ac3H11_1935at 150.571 kb on - strand, within Ac3H11_1935at 150.649 kb on - strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.687 kb on + strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.688 kb on - strand, within Ac3H11_1935at 150.877 kb on - strand, within Ac3H11_1935at 151.032 kb on - strand, within Ac3H11_1935at 151.062 kb on + strand, within Ac3H11_1935at 151.062 kb on + strand, within Ac3H11_1935

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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147,986 - Ac3H11_1933 0.25 +0.5
148,042 + Ac3H11_1933 0.30 +0.7
148,043 - Ac3H11_1933 0.30 +0.8
148,399 + Ac3H11_1933 0.61 -0.8
148,399 + Ac3H11_1933 0.61 +0.4
148,399 + Ac3H11_1933 0.61 -1.4
148,399 + Ac3H11_1933 0.61 -0.8
148,400 - Ac3H11_1933 0.61 +0.7
148,400 - Ac3H11_1933 0.61 -1.4
148,400 - Ac3H11_1933 0.61 +0.4
148,400 - Ac3H11_1933 0.61 +0.4
148,519 + Ac3H11_1933 0.71 +0.5
148,519 + Ac3H11_1933 0.71 +0.2
148,519 + Ac3H11_1933 0.71 +1.2
148,519 + Ac3H11_1933 0.71 +0.3
148,520 - Ac3H11_1933 0.71 +0.7
148,520 - Ac3H11_1933 0.71 -1.4
148,520 - Ac3H11_1933 0.71 -0.6
148,520 - Ac3H11_1933 0.71 +0.3
148,520 - Ac3H11_1933 0.71 +0.6
148,558 + Ac3H11_1933 0.75 -2.1
148,558 + Ac3H11_1933 0.75 +0.4
148,558 + Ac3H11_1933 0.75 +0.8
148,558 + Ac3H11_1933 0.75 +0.0
148,558 + Ac3H11_1933 0.75 -1.1
148,559 - Ac3H11_1933 0.75 +0.4
148,559 - Ac3H11_1933 0.75 -0.2
148,640 - Ac3H11_1933 0.82 +0.8
148,642 + Ac3H11_1933 0.82 +0.7
148,642 + Ac3H11_1933 0.82 -0.9
148,642 + Ac3H11_1933 0.82 -0.6
148,642 + Ac3H11_1933 0.82 +0.9
148,642 + Ac3H11_1933 0.82 +0.3
148,669 + Ac3H11_1933 0.84 -0.7
148,669 + Ac3H11_1933 0.84 -0.5
148,669 + Ac3H11_1933 0.84 +0.3
148,670 - Ac3H11_1933 0.84 +1.3
148,738 + -2.6
148,738 + -0.0
148,739 - -0.3
148,739 - +0.3
148,788 - -0.9
148,867 - +1.0
148,871 - -0.1
148,975 + -0.3
148,975 + +1.0
148,975 + +0.8
148,975 + -0.6
148,976 - +0.5
148,976 - +0.5
148,976 - -0.8
148,976 - -0.2
148,976 - +1.0
148,995 + -0.6
148,995 + -1.4
148,995 + -1.5
148,995 + -0.7
148,996 - -0.2
148,996 - -1.6
149,205 + Ac3H11_1934 0.19 -0.6
149,205 + Ac3H11_1934 0.19 +0.4
149,206 - Ac3H11_1934 0.19 +0.1
149,206 - Ac3H11_1934 0.19 -1.8
149,206 - Ac3H11_1934 0.19 -1.5
149,206 - Ac3H11_1934 0.19 +0.2
149,211 + Ac3H11_1934 0.20 +0.7
149,211 + Ac3H11_1934 0.20 +0.4
149,211 + Ac3H11_1934 0.20 +0.3
149,212 - Ac3H11_1934 0.20 +0.9
149,253 + Ac3H11_1934 0.23 +1.5
149,254 - Ac3H11_1934 0.23 -0.3
149,254 - Ac3H11_1934 0.23 -0.9
149,254 - Ac3H11_1934 0.23 -1.2
149,298 + Ac3H11_1934 0.27 +0.3
149,299 - Ac3H11_1934 0.27 +0.3
149,325 + Ac3H11_1934 0.29 -0.1
149,325 + Ac3H11_1934 0.29 +0.1
149,325 + Ac3H11_1934 0.29 +0.2
149,325 + Ac3H11_1934 0.29 +0.2
149,326 - Ac3H11_1934 0.29 -2.9
149,326 - Ac3H11_1934 0.29 -1.6
149,326 - Ac3H11_1934 0.29 -2.4
149,326 - Ac3H11_1934 0.29 -0.6
149,326 - Ac3H11_1934 0.29 +0.3
149,373 + Ac3H11_1934 0.34 +0.1
149,374 - Ac3H11_1934 0.34 -0.7
149,535 + Ac3H11_1934 0.47 +0.0
149,535 + Ac3H11_1934 0.47 +0.1
149,535 + Ac3H11_1934 0.47 -1.0
149,535 + Ac3H11_1934 0.47 -0.1
149,536 - Ac3H11_1934 0.47 -0.4
149,536 - Ac3H11_1934 0.47 -0.4
149,625 + Ac3H11_1934 0.55 -0.6
149,626 - Ac3H11_1934 0.55 -1.4
149,626 - Ac3H11_1934 0.55 -0.1
149,626 - Ac3H11_1934 0.55 +1.8
149,626 - Ac3H11_1934 0.55 +0.8
149,694 + Ac3H11_1934 0.61 +1.0
149,694 + Ac3H11_1934 0.61 +0.4
149,694 + Ac3H11_1934 0.61 +0.0
149,694 + Ac3H11_1934 0.61 -0.3
149,695 - Ac3H11_1934 0.61 +1.2
149,695 - Ac3H11_1934 0.61 -0.7
149,695 - Ac3H11_1934 0.61 -0.2
149,697 + Ac3H11_1934 0.61 -0.9
149,697 + Ac3H11_1934 0.61 -0.1
149,697 + Ac3H11_1934 0.61 -0.0
149,697 + Ac3H11_1934 0.61 -1.3
149,698 - Ac3H11_1934 0.61 +0.5
149,698 - Ac3H11_1934 0.61 -0.3
149,698 - Ac3H11_1934 0.61 -0.7
149,698 - Ac3H11_1934 0.61 -0.8
149,698 - Ac3H11_1934 0.61 -0.4
149,698 - Ac3H11_1934 0.61 -1.1
149,715 + Ac3H11_1934 0.63 -0.3
149,739 + Ac3H11_1934 0.65 +0.7
149,739 + Ac3H11_1934 0.65 -0.3
149,739 + Ac3H11_1934 0.65 +0.3
149,739 + Ac3H11_1934 0.65 +0.7
149,739 + Ac3H11_1934 0.65 +0.6
149,739 + Ac3H11_1934 0.65 +1.5
149,740 - Ac3H11_1934 0.65 -0.1
149,905 - Ac3H11_1934 0.79 -0.9
149,923 + Ac3H11_1934 0.81 -1.0
149,924 - Ac3H11_1934 0.81 -0.7
149,924 - Ac3H11_1934 0.81 -1.3
150,194 - -0.1
150,195 + -1.3
150,195 + -0.7
150,195 + +0.0
150,196 - +1.0
150,196 - -0.8
150,354 + -0.5
150,360 + -0.4
150,361 - +8.1
150,361 - +0.8
150,361 - +0.4
150,384 + +0.3
150,385 - -1.0
150,570 + Ac3H11_1935 0.12 +0.2
150,571 - Ac3H11_1935 0.12 -1.4
150,649 - Ac3H11_1935 0.16 -0.9
150,687 + Ac3H11_1935 0.18 -0.9
150,687 + Ac3H11_1935 0.18 +0.9
150,687 + Ac3H11_1935 0.18 -0.4
150,688 - Ac3H11_1935 0.18 -0.1
150,688 - Ac3H11_1935 0.18 -0.7
150,688 - Ac3H11_1935 0.18 +0.9
150,688 - Ac3H11_1935 0.18 +0.0
150,877 - Ac3H11_1935 0.28 +0.4
151,032 - Ac3H11_1935 0.37 -0.3
151,062 + Ac3H11_1935 0.38 -0.3
151,062 + Ac3H11_1935 0.38 -2.0

Or see this region's nucleotide sequence