Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15390 and AZOBR_RS15395 are separated by 10 nucleotides AZOBR_RS15395 and AZOBR_RS15400 are separated by 120 nucleotides
AZOBR_RS15390: AZOBR_RS15390 - chemotaxis protein, at 214,152 to 216,230
_RS15390
AZOBR_RS15395: AZOBR_RS15395 - phytoene synthase, at 216,241 to 217,095
_RS15395
AZOBR_RS15400: AZOBR_RS15400 - squalene synthase, at 217,216 to 218,088
_RS15400
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 215.889 kb on - strand, within AZOBR_RS15390 at 215.889 kb on - strand, within AZOBR_RS15390 at 216.872 kb on + strand, within AZOBR_RS15395 at 216.873 kb on - strand, within AZOBR_RS15395 at 216.873 kb on - strand, within AZOBR_RS15395 at 217.043 kb on + strand at 217.044 kb on - strand at 217.067 kb on + strand at 217.068 kb on - strand at 217.162 kb on + strand at 217.162 kb on + strand at 217.162 kb on + strand at 217.163 kb on - strand at 217.163 kb on - strand at 217.164 kb on + strand at 217.164 kb on + strand at 217.164 kb on + strand at 217.167 kb on + strand at 217.421 kb on - strand, within AZOBR_RS15400 at 217.471 kb on + strand, within AZOBR_RS15400 at 217.471 kb on + strand, within AZOBR_RS15400 at 217.642 kb on + strand, within AZOBR_RS15400 at 217.642 kb on + strand, within AZOBR_RS15400 at 218.037 kb on + strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.086 kb on + strand at 218.086 kb on + strand at 218.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 215,889 - AZOBR_RS15390 0.84 +0.1 215,889 - AZOBR_RS15390 0.84 +0.1 216,872 + AZOBR_RS15395 0.74 -2.8 216,873 - AZOBR_RS15395 0.74 -2.0 216,873 - AZOBR_RS15395 0.74 -0.4 217,043 + +0.6 217,044 - +0.6 217,067 + +0.1 217,068 - -0.0 217,162 + +0.5 217,162 + +1.1 217,162 + +0.3 217,163 - +0.2 217,163 - -0.2 217,164 + +1.7 217,164 + -0.0 217,164 + -0.9 217,167 + +0.3 217,421 - AZOBR_RS15400 0.23 +0.1 217,471 + AZOBR_RS15400 0.29 +0.7 217,471 + AZOBR_RS15400 0.29 +0.1 217,642 + AZOBR_RS15400 0.49 -0.3 217,642 + AZOBR_RS15400 0.49 +0.4 218,037 + +0.0 218,038 - -0.1 218,038 - +0.1 218,038 - +0.6 218,038 - +0.1 218,086 + +0.1 218,086 + +0.0 218,087 - -0.1
Or see this region's nucleotide sequence