Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24010

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24005 and AO353_24010 are separated by 92 nucleotidesAO353_24010 and AO353_24015 are separated by 58 nucleotides AO353_24005: AO353_24005 - peptide synthetase, at 5,274,373 to 5,278,725 _24005 AO353_24010: AO353_24010 - Rhizobactin siderophore biosynthesis protein RhbE, at 5,278,818 to 5,280,137 _24010 AO353_24015: AO353_24015 - non ribosomal peptide synthetase BasB, at 5,280,196 to 5,282,364 _24015 Position (kb) 5278 5279 5280 5281Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 5277.846 kb on + strand, within AO353_24005at 5277.846 kb on + strand, within AO353_24005at 5277.916 kb on + strand, within AO353_24005at 5277.917 kb on - strand, within AO353_24005at 5278.003 kb on + strand, within AO353_24005at 5278.167 kb on - strand, within AO353_24005at 5278.167 kb on - strand, within AO353_24005at 5278.167 kb on - strand, within AO353_24005at 5278.167 kb on - strand, within AO353_24005at 5278.241 kb on - strand, within AO353_24005at 5278.282 kb on + strandat 5278.282 kb on + strand, within AO353_24005at 5278.283 kb on - strand, within AO353_24005at 5278.283 kb on - strand, within AO353_24005at 5278.283 kb on - strand, within AO353_24005at 5278.333 kb on + strandat 5278.333 kb on + strandat 5278.333 kb on + strandat 5278.333 kb on + strandat 5278.334 kb on - strandat 5278.334 kb on - strandat 5278.334 kb on - strandat 5278.334 kb on - strandat 5278.522 kb on + strandat 5278.522 kb on + strandat 5278.522 kb on + strandat 5278.522 kb on + strandat 5278.532 kb on + strandat 5278.532 kb on + strandat 5278.533 kb on - strandat 5278.737 kb on + strandat 5278.738 kb on - strandat 5278.738 kb on - strandat 5278.740 kb on + strandat 5278.740 kb on + strandat 5278.740 kb on + strandat 5278.827 kb on - strandat 5278.828 kb on + strandat 5278.828 kb on + strandat 5278.829 kb on - strandat 5278.837 kb on + strandat 5278.837 kb on + strandat 5278.837 kb on + strandat 5278.837 kb on + strandat 5278.837 kb on + strandat 5278.837 kb on + strandat 5278.838 kb on - strandat 5278.838 kb on - strandat 5278.838 kb on - strandat 5278.838 kb on - strandat 5278.841 kb on + strandat 5278.841 kb on + strandat 5278.842 kb on - strandat 5278.868 kb on + strandat 5278.868 kb on + strandat 5278.917 kb on - strandat 5279.040 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.049 kb on + strand, within AO353_24010at 5279.050 kb on - strand, within AO353_24010at 5279.073 kb on + strand, within AO353_24010at 5279.082 kb on + strand, within AO353_24010at 5279.082 kb on + strand, within AO353_24010at 5279.082 kb on + strand, within AO353_24010at 5279.082 kb on + strand, within AO353_24010at 5279.083 kb on - strand, within AO353_24010at 5279.083 kb on - strand, within AO353_24010at 5279.083 kb on - strand, within AO353_24010at 5279.085 kb on + strand, within AO353_24010at 5279.085 kb on + strand, within AO353_24010at 5279.085 kb on + strand, within AO353_24010at 5279.086 kb on - strand, within AO353_24010at 5279.086 kb on - strand, within AO353_24010at 5279.086 kb on - strand, within AO353_24010at 5279.089 kb on - strand, within AO353_24010at 5279.118 kb on + strand, within AO353_24010at 5279.127 kb on + strand, within AO353_24010at 5279.127 kb on + strand, within AO353_24010at 5279.128 kb on - strand, within AO353_24010at 5279.128 kb on - strand, within AO353_24010at 5279.193 kb on + strand, within AO353_24010at 5279.193 kb on + strand, within AO353_24010at 5279.194 kb on - strand, within AO353_24010at 5279.194 kb on - strand, within AO353_24010at 5279.194 kb on - strand, within AO353_24010at 5279.194 kb on - strand, within AO353_24010at 5279.259 kb on + strand, within AO353_24010at 5279.259 kb on + strand, within AO353_24010at 5279.260 kb on - strand, within AO353_24010at 5279.260 kb on - strand, within AO353_24010at 5279.529 kb on + strand, within AO353_24010at 5279.530 kb on - strandat 5279.530 kb on - strand, within AO353_24010at 5279.555 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.574 kb on + strand, within AO353_24010at 5279.574 kb on + strand, within AO353_24010at 5279.585 kb on + strand, within AO353_24010at 5279.585 kb on + strand, within AO353_24010at 5279.585 kb on + strandat 5279.585 kb on + strand, within AO353_24010at 5279.586 kb on - strand, within AO353_24010at 5279.634 kb on + strand, within AO353_24010at 5279.634 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.671 kb on - strand, within AO353_24010at 5279.682 kb on + strand, within AO353_24010at 5279.682 kb on + strand, within AO353_24010at 5279.683 kb on - strand, within AO353_24010at 5279.708 kb on + strand, within AO353_24010at 5279.708 kb on + strand, within AO353_24010at 5279.921 kb on + strand, within AO353_24010at 5279.921 kb on + strand, within AO353_24010at 5279.973 kb on - strand, within AO353_24010at 5280.135 kb on + strandat 5280.135 kb on + strandat 5280.135 kb on + strandat 5280.160 kb on + strandat 5280.161 kb on - strandat 5280.490 kb on - strand, within AO353_24015at 5280.490 kb on - strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.566 kb on + strand, within AO353_24015at 5280.566 kb on + strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.774 kb on + strand, within AO353_24015at 5280.775 kb on - strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.777 kb on - strand, within AO353_24015at 5280.777 kb on - strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.965 kb on + strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.993 kb on + strand, within AO353_24015at 5280.994 kb on - strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,277,846 + AO353_24005 0.80 -0.2
5,277,846 + AO353_24005 0.80 +0.7
5,277,916 + AO353_24005 0.81 -1.1
5,277,917 - AO353_24005 0.81 +0.7
5,278,003 + AO353_24005 0.83 +0.6
5,278,167 - AO353_24005 0.87 +2.1
5,278,167 - AO353_24005 0.87 -0.3
5,278,167 - AO353_24005 0.87 +0.3
5,278,167 - AO353_24005 0.87 -0.4
5,278,241 - AO353_24005 0.89 +0.1
5,278,282 + +1.8
5,278,282 + AO353_24005 0.90 -0.4
5,278,283 - AO353_24005 0.90 -0.5
5,278,283 - AO353_24005 0.90 -0.0
5,278,283 - AO353_24005 0.90 +1.1
5,278,333 + +1.5
5,278,333 + +0.6
5,278,333 + +1.4
5,278,333 + -1.0
5,278,334 - -0.8
5,278,334 - -0.1
5,278,334 - -0.5
5,278,334 - -0.3
5,278,522 + +0.8
5,278,522 + +0.9
5,278,522 + -0.4
5,278,522 + -0.0
5,278,532 + +1.3
5,278,532 + -1.0
5,278,533 - -0.4
5,278,737 + +0.7
5,278,738 - +1.1
5,278,738 - +0.8
5,278,740 + +0.9
5,278,740 + +0.3
5,278,740 + +1.0
5,278,827 - -0.2
5,278,828 + +0.2
5,278,828 + +0.2
5,278,829 - +0.0
5,278,837 + -0.5
5,278,837 + -0.7
5,278,837 + +0.3
5,278,837 + +0.1
5,278,837 + +0.5
5,278,837 + +0.1
5,278,838 - +0.6
5,278,838 - -0.7
5,278,838 - +0.2
5,278,838 - +0.6
5,278,841 + -0.2
5,278,841 + +1.0
5,278,842 - -0.2
5,278,868 + +0.9
5,278,868 + +0.7
5,278,917 - +0.8
5,279,040 + AO353_24010 0.17 -0.3
5,279,049 + AO353_24010 0.17 +0.1
5,279,049 + AO353_24010 0.17 +0.3
5,279,049 + AO353_24010 0.17 +0.6
5,279,049 + AO353_24010 0.17 +1.3
5,279,049 + AO353_24010 0.17 +0.3
5,279,049 + AO353_24010 0.17 +0.6
5,279,049 + AO353_24010 0.17 +0.3
5,279,049 + AO353_24010 0.17 -0.8
5,279,050 - AO353_24010 0.18 +0.6
5,279,073 + AO353_24010 0.19 -0.7
5,279,082 + AO353_24010 0.20 +1.1
5,279,082 + AO353_24010 0.20 +1.6
5,279,082 + AO353_24010 0.20 -0.7
5,279,082 + AO353_24010 0.20 -0.3
5,279,083 - AO353_24010 0.20 +0.3
5,279,083 - AO353_24010 0.20 -1.8
5,279,083 - AO353_24010 0.20 +0.9
5,279,085 + AO353_24010 0.20 -0.1
5,279,085 + AO353_24010 0.20 -0.6
5,279,085 + AO353_24010 0.20 +0.1
5,279,086 - AO353_24010 0.20 -0.7
5,279,086 - AO353_24010 0.20 +1.5
5,279,086 - AO353_24010 0.20 +0.2
5,279,089 - AO353_24010 0.21 -2.1
5,279,118 + AO353_24010 0.23 +0.5
5,279,127 + AO353_24010 0.23 -1.0
5,279,127 + AO353_24010 0.23 +1.5
5,279,128 - AO353_24010 0.23 +0.4
5,279,128 - AO353_24010 0.23 -1.9
5,279,193 + AO353_24010 0.28 +0.1
5,279,193 + AO353_24010 0.28 +0.5
5,279,194 - AO353_24010 0.28 +0.6
5,279,194 - AO353_24010 0.28 -2.1
5,279,194 - AO353_24010 0.28 +1.5
5,279,194 - AO353_24010 0.28 +0.8
5,279,259 + AO353_24010 0.33 +1.2
5,279,259 + AO353_24010 0.33 -0.4
5,279,260 - AO353_24010 0.33 +0.4
5,279,260 - AO353_24010 0.33 -1.0
5,279,529 + AO353_24010 0.54 +0.7
5,279,530 - +1.5
5,279,530 - AO353_24010 0.54 -0.8
5,279,555 + AO353_24010 0.56 +0.7
5,279,565 + AO353_24010 0.57 -0.5
5,279,565 + AO353_24010 0.57 +0.8
5,279,565 + AO353_24010 0.57 -0.7
5,279,565 + AO353_24010 0.57 +1.0
5,279,565 + AO353_24010 0.57 -0.1
5,279,565 + AO353_24010 0.57 -0.7
5,279,565 + AO353_24010 0.57 -1.9
5,279,566 - AO353_24010 0.57 +0.9
5,279,566 - AO353_24010 0.57 -0.5
5,279,566 - AO353_24010 0.57 +2.4
5,279,566 - AO353_24010 0.57 +0.1
5,279,566 - AO353_24010 0.57 -0.3
5,279,566 - AO353_24010 0.57 -1.7
5,279,566 - AO353_24010 0.57 +0.4
5,279,566 - AO353_24010 0.57 +0.7
5,279,574 + AO353_24010 0.57 +0.8
5,279,574 + AO353_24010 0.57 +1.1
5,279,585 + AO353_24010 0.58 +1.1
5,279,585 + AO353_24010 0.58 +1.3
5,279,585 + +1.4
5,279,585 + AO353_24010 0.58 -0.0
5,279,586 - AO353_24010 0.58 -0.4
5,279,634 + AO353_24010 0.62 +0.9
5,279,634 + AO353_24010 0.62 +0.5
5,279,670 + AO353_24010 0.65 -0.2
5,279,670 + AO353_24010 0.65 -1.3
5,279,670 + AO353_24010 0.65 +0.0
5,279,671 - AO353_24010 0.65 -1.1
5,279,682 + AO353_24010 0.65 +0.1
5,279,682 + AO353_24010 0.65 +0.5
5,279,683 - AO353_24010 0.66 +0.1
5,279,708 + AO353_24010 0.67 +1.7
5,279,708 + AO353_24010 0.67 -1.0
5,279,921 + AO353_24010 0.84 -0.9
5,279,921 + AO353_24010 0.84 +0.3
5,279,973 - AO353_24010 0.88 -0.0
5,280,135 + +0.7
5,280,135 + -0.4
5,280,135 + -1.0
5,280,160 + -0.6
5,280,161 - +0.3
5,280,490 - AO353_24015 0.14 +0.5
5,280,490 - AO353_24015 0.14 +0.0
5,280,491 + AO353_24015 0.14 +0.8
5,280,491 + AO353_24015 0.14 -1.4
5,280,491 + AO353_24015 0.14 +4.7
5,280,491 + AO353_24015 0.14 +0.8
5,280,491 + AO353_24015 0.14 -1.6
5,280,492 - AO353_24015 0.14 -0.1
5,280,492 - AO353_24015 0.14 +0.3
5,280,492 - AO353_24015 0.14 -0.5
5,280,492 - AO353_24015 0.14 +0.3
5,280,492 - AO353_24015 0.14 -2.2
5,280,492 - AO353_24015 0.14 +1.3
5,280,566 + AO353_24015 0.17 +0.6
5,280,566 + AO353_24015 0.17 +0.7
5,280,567 - AO353_24015 0.17 +0.4
5,280,567 - AO353_24015 0.17 +2.1
5,280,567 - AO353_24015 0.17 +1.2
5,280,668 + AO353_24015 0.22 -0.7
5,280,668 + AO353_24015 0.22 +1.0
5,280,668 + AO353_24015 0.22 +2.0
5,280,774 + AO353_24015 0.27 +0.6
5,280,775 - AO353_24015 0.27 -0.1
5,280,776 + AO353_24015 0.27 -1.1
5,280,776 + AO353_24015 0.27 -1.4
5,280,776 + AO353_24015 0.27 +0.2
5,280,777 - AO353_24015 0.27 +0.3
5,280,777 - AO353_24015 0.27 +0.6
5,280,821 + AO353_24015 0.29 +0.9
5,280,821 + AO353_24015 0.29 +2.2
5,280,821 + AO353_24015 0.29 +0.2
5,280,822 - AO353_24015 0.29 -0.2
5,280,822 - AO353_24015 0.29 +1.5
5,280,822 - AO353_24015 0.29 +0.4
5,280,822 - AO353_24015 0.29 -1.0
5,280,965 + AO353_24015 0.35 -0.8
5,280,966 - AO353_24015 0.36 +1.2
5,280,966 - AO353_24015 0.36 -1.0
5,280,966 - AO353_24015 0.36 +0.9
5,280,993 + AO353_24015 0.37 -0.0
5,280,994 - AO353_24015 0.37 -0.1
5,281,076 + AO353_24015 0.41 -0.3
5,281,076 + AO353_24015 0.41 +6.3
5,281,076 + AO353_24015 0.41 +0.5

Or see this region's nucleotide sequence