Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23170 and AO353_23175 overlap by 1 nucleotides AO353_23175 and AO353_23180 are separated by 28 nucleotides AO353_23180 and AO353_23185 are separated by 39 nucleotides
AO353_23170: AO353_23170 - short-chain dehydrogenase, at 5,083,689 to 5,084,453
_23170
AO353_23175: AO353_23175 - ABC transporter permease, at 5,084,453 to 5,085,229
_23175
AO353_23180: AO353_23180 - nitrate ABC transporter substrate-binding protein, at 5,085,258 to 5,086,259
_23180
AO353_23185: AO353_23185 - ABC transporter ATP-binding protein, at 5,086,299 to 5,087,135
_23185
Position (kb)
5085
5086
5087 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5084.383 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.865 kb on + strand, within AO353_23175 at 5084.895 kb on - strand, within AO353_23175 at 5084.895 kb on - strand, within AO353_23175 at 5084.940 kb on + strand, within AO353_23175 at 5084.940 kb on + strand, within AO353_23175 at 5085.214 kb on + strand at 5085.214 kb on + strand at 5085.214 kb on + strand at 5085.215 kb on - strand at 5085.215 kb on - strand at 5085.217 kb on + strand at 5085.238 kb on + strand at 5085.298 kb on + strand at 5085.298 kb on + strand at 5085.299 kb on - strand at 5085.299 kb on - strand at 5085.346 kb on + strand at 5085.346 kb on + strand at 5085.347 kb on - strand at 5085.409 kb on + strand, within AO353_23180 at 5085.409 kb on + strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.424 kb on + strand, within AO353_23180 at 5085.424 kb on + strand, within AO353_23180 at 5085.467 kb on - strand, within AO353_23180 at 5085.799 kb on - strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.818 kb on - strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5086.090 kb on + strand, within AO353_23180 at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.263 kb on + strand at 5086.264 kb on - strand at 5086.264 kb on - strand at 5086.264 kb on - strand at 5086.264 kb on - strand at 5087.108 kb on + strand at 5087.131 kb on + strand at 5087.131 kb on + strand at 5087.132 kb on - strand at 5087.132 kb on - strand at 5087.174 kb on + strand at 5087.175 kb on - strand at 5087.176 kb on + strand at 5087.176 kb on + strand at 5087.183 kb on + strand at 5087.183 kb on + strand at 5087.184 kb on - strand at 5087.184 kb on - strand at 5087.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,084,383 + +0.4 5,084,484 + +0.4 5,084,484 + -1.0 5,084,484 + -0.5 5,084,485 - +1.5 5,084,485 - +0.6 5,084,485 - +0.4 5,084,531 + AO353_23175 0.10 -1.2 5,084,531 + AO353_23175 0.10 +0.6 5,084,531 + AO353_23175 0.10 -1.2 5,084,532 - AO353_23175 0.10 +1.5 5,084,532 - AO353_23175 0.10 +0.8 5,084,532 - AO353_23175 0.10 +0.8 5,084,810 + AO353_23175 0.46 +0.2 5,084,810 + AO353_23175 0.46 -0.1 5,084,810 + AO353_23175 0.46 -1.5 5,084,810 + AO353_23175 0.46 +0.5 5,084,810 + AO353_23175 0.46 -0.4 5,084,810 + AO353_23175 0.46 +0.1 5,084,811 - AO353_23175 0.46 +0.5 5,084,811 - AO353_23175 0.46 +0.9 5,084,811 - AO353_23175 0.46 -1.7 5,084,811 - AO353_23175 0.46 -0.2 5,084,811 - AO353_23175 0.46 +0.8 5,084,865 + AO353_23175 0.53 +0.6 5,084,895 - AO353_23175 0.57 +0.8 5,084,895 - AO353_23175 0.57 +0.4 5,084,940 + AO353_23175 0.63 +1.4 5,084,940 + AO353_23175 0.63 +1.6 5,085,214 + -0.0 5,085,214 + +0.4 5,085,214 + -0.6 5,085,215 - -2.4 5,085,215 - +0.6 5,085,217 + +0.9 5,085,238 + -0.5 5,085,298 + -1.8 5,085,298 + +1.1 5,085,299 - +2.1 5,085,299 - +2.1 5,085,346 + -0.2 5,085,346 + -0.0 5,085,347 - +0.7 5,085,409 + AO353_23180 0.15 +0.7 5,085,409 + AO353_23180 0.15 +0.5 5,085,410 - AO353_23180 0.15 +0.3 5,085,410 - AO353_23180 0.15 +2.3 5,085,410 - AO353_23180 0.15 +0.1 5,085,424 + AO353_23180 0.17 +0.9 5,085,424 + AO353_23180 0.17 -0.2 5,085,467 - AO353_23180 0.21 +2.6 5,085,799 - AO353_23180 0.54 +1.0 5,085,817 + AO353_23180 0.56 -0.7 5,085,817 + AO353_23180 0.56 -0.5 5,085,817 + AO353_23180 0.56 +0.5 5,085,818 - AO353_23180 0.56 +0.8 5,085,820 + AO353_23180 0.56 -0.3 5,085,820 + AO353_23180 0.56 +1.8 5,085,820 + AO353_23180 0.56 -0.7 5,085,820 + AO353_23180 0.56 +1.1 5,085,820 + AO353_23180 0.56 +0.7 5,085,820 + AO353_23180 0.56 +1.0 5,085,820 + AO353_23180 0.56 -0.5 5,085,820 + AO353_23180 0.56 +0.8 5,085,821 - AO353_23180 0.56 +0.5 5,085,821 - AO353_23180 0.56 -0.4 5,085,821 - AO353_23180 0.56 +1.5 5,085,821 - AO353_23180 0.56 -0.0 5,085,821 - AO353_23180 0.56 +1.8 5,085,821 - AO353_23180 0.56 -1.1 5,086,090 + AO353_23180 0.83 +0.6 5,086,159 + +0.6 5,086,159 + -0.9 5,086,159 + -0.4 5,086,159 + -1.5 5,086,159 + +1.3 5,086,159 + +0.6 5,086,159 + -0.6 5,086,160 - -3.0 5,086,160 - -0.7 5,086,160 - -0.7 5,086,160 - -0.0 5,086,160 - +0.2 5,086,160 - +1.7 5,086,263 + -0.0 5,086,264 - +0.5 5,086,264 - +0.5 5,086,264 - +2.7 5,086,264 - +1.8 5,087,108 + +0.3 5,087,131 + +0.7 5,087,131 + +0.9 5,087,132 - +0.7 5,087,132 - -0.9 5,087,174 + -2.7 5,087,175 - +1.8 5,087,176 + +0.5 5,087,176 + +1.1 5,087,183 + -0.1 5,087,183 + +0.6 5,087,184 - +1.9 5,087,184 - +2.1 5,087,184 - +2.4
Or see this region's nucleotide sequence