Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20900 and AO353_20905 are separated by 3 nucleotides AO353_20905 and AO353_20910 overlap by 20 nucleotides AO353_20910 and AO353_20915 are separated by 89 nucleotides
AO353_20900: AO353_20900 - phenylalanine--tRNA ligase subunit beta, at 4,571,874 to 4,574,252
_20900
AO353_20905: AO353_20905 - integration host factor subunit alpha, at 4,574,256 to 4,574,558
_20905
AO353_20910: AO353_20910 - MerR family transcriptional regulator, at 4,574,539 to 4,574,895
_20910
AO353_20915: AO353_20915 - tRNA-Pro, at 4,574,985 to 4,575,061
_20915
Position (kb) 4574
4575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.538 kb on + strand at 4574.538 kb on + strand at 4574.538 kb on + strand at 4574.539 kb on - strand at 4574.591 kb on - strand, within AO353_20910 at 4574.647 kb on + strand, within AO353_20910 at 4574.707 kb on + strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.751 kb on - strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.831 kb on - strand, within AO353_20910 at 4574.938 kb on - strand at 4574.981 kb on + strand at 4575.013 kb on + strand, within AO353_20915 at 4575.062 kb on + strand at 4575.194 kb on + strand at 4575.194 kb on + strand at 4575.194 kb on + strand at 4575.195 kb on - strand at 4575.195 kb on - strand at 4575.331 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.583 kb on + strand at 4575.584 kb on - strand at 4575.682 kb on + strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,574,295 + AO353_20905 0.13 +1.9 4,574,295 + AO353_20905 0.13 -0.8 4,574,295 + AO353_20905 0.13 -0.6 4,574,295 + AO353_20905 0.13 -2.4 4,574,538 + -0.4 4,574,538 + -1.1 4,574,538 + -1.1 4,574,539 - -0.6 4,574,591 - AO353_20910 0.15 +0.1 4,574,647 + AO353_20910 0.30 -1.6 4,574,707 + AO353_20910 0.47 -2.6 4,574,708 - AO353_20910 0.47 -1.2 4,574,708 - AO353_20910 0.47 -3.0 4,574,708 - AO353_20910 0.47 -2.4 4,574,708 - AO353_20910 0.47 -1.0 4,574,750 + AO353_20910 0.59 -2.0 4,574,750 + AO353_20910 0.59 -1.6 4,574,750 + AO353_20910 0.59 -1.6 4,574,751 - AO353_20910 0.59 -1.4 4,574,755 + AO353_20910 0.61 -1.2 4,574,755 + AO353_20910 0.61 -2.4 4,574,755 + AO353_20910 0.61 -2.0 4,574,756 - AO353_20910 0.61 -0.5 4,574,756 - AO353_20910 0.61 -2.4 4,574,756 - AO353_20910 0.61 -1.7 4,574,756 - AO353_20910 0.61 -1.4 4,574,756 - AO353_20910 0.61 -1.1 4,574,830 + AO353_20910 0.82 -1.3 4,574,830 + AO353_20910 0.82 -0.9 4,574,830 + AO353_20910 0.82 -0.5 4,574,831 - AO353_20910 0.82 +0.6 4,574,938 - +0.7 4,574,981 + -0.5 4,575,013 + AO353_20915 0.36 -1.2 4,575,062 + -0.5 4,575,194 + +0.4 4,575,194 + +0.0 4,575,194 + -0.5 4,575,195 - -1.5 4,575,195 - +0.4 4,575,331 - +1.4 4,575,366 - +0.2 4,575,366 - +0.2 4,575,366 - -1.5 4,575,366 - +0.2 4,575,583 + -1.4 4,575,584 - -0.4 4,575,682 + +0.2 4,575,683 - +0.8 4,575,683 - +0.8 4,575,683 - +0.4 4,575,683 - -0.5 4,575,683 - -0.8 4,575,740 - +0.8 4,575,740 - -0.6 4,575,740 - +0.7 4,575,740 - -0.2 4,575,794 - +0.4
Or see this region's nucleotide sequence