Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18320

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18315 and AO353_18320 are separated by 140 nucleotidesAO353_18320 and AO353_18325 are separated by 315 nucleotidesAO353_18325 and AO353_18330 are separated by 293 nucleotides AO353_18315: AO353_18315 - hypothetical protein, at 4,038,533 to 4,039,114 _18315 AO353_18320: AO353_18320 - hypothetical protein, at 4,039,255 to 4,039,698 _18320 AO353_18325: AO353_18325 - hypothetical protein, at 4,040,014 to 4,040,397 _18325 AO353_18330: AO353_18330 - short-chain dehydrogenase, at 4,040,691 to 4,040,957 _18330 Position (kb) 4039 4040Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.257 kb on + strandat 4038.258 kb on - strandat 4038.258 kb on - strandat 4038.258 kb on - strandat 4038.258 kb on - strandat 4038.258 kb on - strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.260 kb on + strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.261 kb on - strandat 4038.275 kb on + strandat 4038.275 kb on + strandat 4038.275 kb on + strandat 4038.276 kb on - strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.358 kb on + strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.359 kb on - strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.362 kb on + strandat 4038.363 kb on - strandat 4038.363 kb on - strandat 4038.363 kb on - strandat 4038.363 kb on - strandat 4038.363 kb on - strandat 4038.386 kb on + strandat 4038.485 kb on - strandat 4038.498 kb on + strandat 4038.498 kb on + strandat 4038.498 kb on + strandat 4038.499 kb on - strandat 4038.503 kb on + strandat 4038.504 kb on - strandat 4038.550 kb on - strandat 4038.564 kb on + strandat 4038.564 kb on + strandat 4038.596 kb on + strand, within AO353_18315at 4038.596 kb on + strand, within AO353_18315at 4038.596 kb on + strand, within AO353_18315at 4038.596 kb on + strand, within AO353_18315at 4038.596 kb on + strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.597 kb on - strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.599 kb on + strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.600 kb on - strand, within AO353_18315at 4038.638 kb on - strand, within AO353_18315at 4038.641 kb on + strand, within AO353_18315at 4038.642 kb on - strand, within AO353_18315at 4038.754 kb on + strand, within AO353_18315at 4038.755 kb on - strand, within AO353_18315at 4038.789 kb on - strand, within AO353_18315at 4038.812 kb on + strand, within AO353_18315at 4038.812 kb on + strand, within AO353_18315at 4038.813 kb on - strand, within AO353_18315at 4038.813 kb on - strand, within AO353_18315at 4038.813 kb on - strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.871 kb on + strand, within AO353_18315at 4038.872 kb on - strand, within AO353_18315at 4038.872 kb on - strand, within AO353_18315at 4038.872 kb on - strand, within AO353_18315at 4038.963 kb on + strand, within AO353_18315at 4038.998 kb on - strand, within AO353_18315at 4038.998 kb on - strand, within AO353_18315at 4039.033 kb on + strand, within AO353_18315at 4039.034 kb on - strand, within AO353_18315at 4039.034 kb on - strand, within AO353_18315at 4039.034 kb on - strand, within AO353_18315at 4039.055 kb on + strand, within AO353_18315at 4039.055 kb on + strand, within AO353_18315at 4039.058 kb on - strandat 4039.064 kb on - strandat 4039.079 kb on - strandat 4039.099 kb on + strandat 4039.112 kb on + strandat 4039.386 kb on + strand, within AO353_18320at 4039.386 kb on + strand, within AO353_18320at 4039.401 kb on + strand, within AO353_18320at 4039.402 kb on - strand, within AO353_18320at 4039.402 kb on - strand, within AO353_18320at 4039.437 kb on - strand, within AO353_18320at 4039.437 kb on - strand, within AO353_18320at 4039.440 kb on + strand, within AO353_18320at 4039.441 kb on - strand, within AO353_18320at 4039.444 kb on - strand, within AO353_18320at 4039.469 kb on - strand, within AO353_18320at 4039.535 kb on + strand, within AO353_18320at 4039.535 kb on + strand, within AO353_18320at 4039.536 kb on - strand, within AO353_18320at 4039.608 kb on + strand, within AO353_18320at 4039.608 kb on + strand, within AO353_18320at 4039.611 kb on + strand, within AO353_18320at 4039.612 kb on - strand, within AO353_18320at 4039.662 kb on + strandat 4039.662 kb on + strandat 4039.663 kb on - strandat 4039.716 kb on + strandat 4039.716 kb on + strandat 4039.717 kb on - strandat 4039.717 kb on - strandat 4039.797 kb on - strandat 4039.809 kb on + strandat 4039.822 kb on - strandat 4039.931 kb on + strandat 4039.931 kb on + strandat 4039.932 kb on - strandat 4039.962 kb on - strandat 4039.995 kb on + strandat 4039.995 kb on + strandat 4039.996 kb on - strandat 4040.075 kb on + strand, within AO353_18325at 4040.075 kb on + strand, within AO353_18325at 4040.225 kb on + strand, within AO353_18325at 4040.226 kb on - strand, within AO353_18325at 4040.226 kb on - strand, within AO353_18325at 4040.229 kb on + strand, within AO353_18325at 4040.417 kb on - strandat 4040.480 kb on + strandat 4040.481 kb on - strandat 4040.481 kb on - strandat 4040.481 kb on - strandat 4040.485 kb on - strandat 4040.513 kb on - strandat 4040.552 kb on + strandat 4040.552 kb on + strandat 4040.574 kb on + strandat 4040.574 kb on + strandat 4040.575 kb on - strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.578 kb on + strandat 4040.579 kb on - strandat 4040.579 kb on - strandat 4040.579 kb on - strandat 4040.579 kb on - strandat 4040.638 kb on + strandat 4040.638 kb on + strandat 4040.638 kb on + strandat 4040.638 kb on + strandat 4040.638 kb on + strandat 4040.638 kb on + strandat 4040.639 kb on - strandat 4040.639 kb on - strandat 4040.639 kb on - strandat 4040.639 kb on - strandat 4040.639 kb on - strandat 4040.663 kb on + strandat 4040.663 kb on + strandat 4040.663 kb on + strandat 4040.663 kb on + strandat 4040.663 kb on + strandat 4040.663 kb on + strandat 4040.664 kb on - strandat 4040.664 kb on - strandat 4040.664 kb on - strandat 4040.680 kb on + strandat 4040.680 kb on + strandat 4040.680 kb on + strandat 4040.680 kb on + strandat 4040.680 kb on + strandat 4040.681 kb on - strandat 4040.681 kb on - strandat 4040.687 kb on + strandat 4040.687 kb on + strandat 4040.688 kb on - strandat 4040.688 kb on - strandat 4040.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,038,257 + -1.8
4,038,257 + -0.5
4,038,257 + +0.2
4,038,257 + -0.0
4,038,257 + -0.4
4,038,257 + -1.3
4,038,257 + -0.4
4,038,257 + -1.1
4,038,257 + -0.1
4,038,258 - -0.8
4,038,258 - +0.4
4,038,258 - -0.7
4,038,258 - +0.8
4,038,258 - -0.5
4,038,260 + -1.6
4,038,260 + -1.0
4,038,260 + -0.2
4,038,260 + -1.8
4,038,260 + +0.8
4,038,260 + -0.5
4,038,260 + +0.6
4,038,261 - -0.9
4,038,261 - -1.0
4,038,261 - -0.4
4,038,261 - -1.0
4,038,261 - -0.3
4,038,261 - -1.1
4,038,261 - +0.1
4,038,261 - +0.4
4,038,261 - -1.8
4,038,275 + -1.0
4,038,275 + -0.5
4,038,275 + -0.7
4,038,276 - +1.0
4,038,358 + +0.1
4,038,358 + -0.4
4,038,358 + +1.7
4,038,358 + -0.1
4,038,358 + +2.1
4,038,358 + +0.4
4,038,358 + +0.2
4,038,358 + -0.2
4,038,358 + +0.0
4,038,358 + +0.6
4,038,358 + +3.5
4,038,359 - +0.1
4,038,359 - -0.1
4,038,359 - -0.7
4,038,359 - -1.4
4,038,359 - -0.1
4,038,359 - -1.4
4,038,359 - -0.8
4,038,359 - -1.4
4,038,359 - -0.7
4,038,359 - -0.7
4,038,359 - -0.6
4,038,359 - -0.4
4,038,359 - +0.3
4,038,362 + -0.6
4,038,362 + -2.5
4,038,362 + -0.0
4,038,362 + +0.4
4,038,362 + +1.6
4,038,362 + -0.5
4,038,362 + +0.6
4,038,363 - -0.1
4,038,363 - -2.2
4,038,363 - -0.2
4,038,363 - +0.3
4,038,363 - +0.1
4,038,386 + +0.9
4,038,485 - +0.9
4,038,498 + -0.9
4,038,498 + +0.9
4,038,498 + -0.3
4,038,499 - -0.1
4,038,503 + -0.4
4,038,504 - +1.2
4,038,550 - -0.1
4,038,564 + -0.5
4,038,564 + +0.2
4,038,596 + AO353_18315 0.11 -0.7
4,038,596 + AO353_18315 0.11 +1.3
4,038,596 + AO353_18315 0.11 -1.2
4,038,596 + AO353_18315 0.11 -1.7
4,038,596 + AO353_18315 0.11 -0.4
4,038,597 - AO353_18315 0.11 +0.3
4,038,597 - AO353_18315 0.11 -0.6
4,038,597 - AO353_18315 0.11 +0.3
4,038,597 - AO353_18315 0.11 -0.4
4,038,597 - AO353_18315 0.11 -0.9
4,038,597 - AO353_18315 0.11 -1.2
4,038,599 + AO353_18315 0.11 +0.7
4,038,599 + AO353_18315 0.11 -0.2
4,038,599 + AO353_18315 0.11 -1.1
4,038,599 + AO353_18315 0.11 -1.2
4,038,599 + AO353_18315 0.11 +0.9
4,038,599 + AO353_18315 0.11 +1.1
4,038,599 + AO353_18315 0.11 -0.7
4,038,599 + AO353_18315 0.11 -0.5
4,038,599 + AO353_18315 0.11 +0.9
4,038,599 + AO353_18315 0.11 +0.5
4,038,599 + AO353_18315 0.11 +1.3
4,038,599 + AO353_18315 0.11 -0.5
4,038,599 + AO353_18315 0.11 +0.3
4,038,599 + AO353_18315 0.11 +0.2
4,038,600 - AO353_18315 0.12 +3.4
4,038,600 - AO353_18315 0.12 -0.9
4,038,600 - AO353_18315 0.12 -0.3
4,038,600 - AO353_18315 0.12 -0.7
4,038,600 - AO353_18315 0.12 +0.1
4,038,600 - AO353_18315 0.12 +1.5
4,038,600 - AO353_18315 0.12 -0.1
4,038,600 - AO353_18315 0.12 +0.9
4,038,600 - AO353_18315 0.12 +0.9
4,038,600 - AO353_18315 0.12 +0.4
4,038,600 - AO353_18315 0.12 -0.9
4,038,600 - AO353_18315 0.12 -0.5
4,038,600 - AO353_18315 0.12 +1.1
4,038,600 - AO353_18315 0.12 +0.3
4,038,600 - AO353_18315 0.12 -0.4
4,038,600 - AO353_18315 0.12 +0.4
4,038,600 - AO353_18315 0.12 +0.8
4,038,638 - AO353_18315 0.18 +2.4
4,038,641 + AO353_18315 0.19 -1.0
4,038,642 - AO353_18315 0.19 -0.8
4,038,754 + AO353_18315 0.38 -0.9
4,038,755 - AO353_18315 0.38 +0.1
4,038,789 - AO353_18315 0.44 -0.1
4,038,812 + AO353_18315 0.48 -0.2
4,038,812 + AO353_18315 0.48 -1.6
4,038,813 - AO353_18315 0.48 -0.4
4,038,813 - AO353_18315 0.48 -0.4
4,038,813 - AO353_18315 0.48 +0.3
4,038,871 + AO353_18315 0.58 +0.1
4,038,871 + AO353_18315 0.58 -0.6
4,038,871 + AO353_18315 0.58 -0.3
4,038,871 + AO353_18315 0.58 +0.8
4,038,871 + AO353_18315 0.58 -0.6
4,038,871 + AO353_18315 0.58 -0.1
4,038,871 + AO353_18315 0.58 +1.3
4,038,872 - AO353_18315 0.58 +0.1
4,038,872 - AO353_18315 0.58 +1.3
4,038,872 - AO353_18315 0.58 +0.2
4,038,963 + AO353_18315 0.74 -0.8
4,038,998 - AO353_18315 0.80 +0.6
4,038,998 - AO353_18315 0.80 +0.6
4,039,033 + AO353_18315 0.86 +0.3
4,039,034 - AO353_18315 0.86 +4.4
4,039,034 - AO353_18315 0.86 +0.1
4,039,034 - AO353_18315 0.86 -1.4
4,039,055 + AO353_18315 0.90 +0.8
4,039,055 + AO353_18315 0.90 -1.5
4,039,058 - +1.1
4,039,064 - -0.2
4,039,079 - +0.1
4,039,099 + +0.3
4,039,112 + +0.3
4,039,386 + AO353_18320 0.30 +0.4
4,039,386 + AO353_18320 0.30 +0.9
4,039,401 + AO353_18320 0.33 +1.3
4,039,402 - AO353_18320 0.33 -0.7
4,039,402 - AO353_18320 0.33 -0.5
4,039,437 - AO353_18320 0.41 -0.4
4,039,437 - AO353_18320 0.41 -0.5
4,039,440 + AO353_18320 0.42 -0.2
4,039,441 - AO353_18320 0.42 +0.1
4,039,444 - AO353_18320 0.43 +0.7
4,039,469 - AO353_18320 0.48 +0.1
4,039,535 + AO353_18320 0.63 +0.3
4,039,535 + AO353_18320 0.63 -1.6
4,039,536 - AO353_18320 0.63 -0.6
4,039,608 + AO353_18320 0.80 +0.8
4,039,608 + AO353_18320 0.80 -0.7
4,039,611 + AO353_18320 0.80 -0.5
4,039,612 - AO353_18320 0.80 +0.1
4,039,662 + +0.3
4,039,662 + -0.3
4,039,663 - +2.4
4,039,716 + -2.4
4,039,716 + -0.6
4,039,717 - -0.7
4,039,717 - -1.9
4,039,797 - +0.3
4,039,809 + +1.1
4,039,822 - +0.1
4,039,931 + +0.2
4,039,931 + -0.5
4,039,932 - -0.7
4,039,962 - +0.1
4,039,995 + -2.0
4,039,995 + -0.9
4,039,996 - +0.6
4,040,075 + AO353_18325 0.16 -1.6
4,040,075 + AO353_18325 0.16 -0.5
4,040,225 + AO353_18325 0.55 +0.5
4,040,226 - AO353_18325 0.55 -0.1
4,040,226 - AO353_18325 0.55 +2.2
4,040,229 + AO353_18325 0.56 +0.1
4,040,417 - +0.1
4,040,480 + -0.5
4,040,481 - -0.8
4,040,481 - +0.2
4,040,481 - +0.2
4,040,485 - -0.7
4,040,513 - -1.0
4,040,552 + -0.7
4,040,552 + -1.7
4,040,574 + -0.2
4,040,574 + +0.2
4,040,575 - +0.3
4,040,578 + -1.2
4,040,578 + +0.2
4,040,578 + +0.3
4,040,578 + -0.9
4,040,578 + +0.7
4,040,578 + -0.1
4,040,578 + +0.3
4,040,578 + -2.6
4,040,578 + -1.1
4,040,578 + +0.8
4,040,578 + +0.8
4,040,578 + -0.0
4,040,578 + +1.1
4,040,578 + +2.1
4,040,579 - -0.3
4,040,579 - +0.3
4,040,579 - +0.4
4,040,579 - -0.1
4,040,638 + +1.4
4,040,638 + +1.8
4,040,638 + -0.2
4,040,638 + +0.9
4,040,638 + +0.1
4,040,638 + -1.1
4,040,639 - -0.6
4,040,639 - -1.2
4,040,639 - -1.7
4,040,639 - -0.3
4,040,639 - -0.2
4,040,663 + -0.7
4,040,663 + -0.2
4,040,663 + +0.4
4,040,663 + +0.0
4,040,663 + -0.3
4,040,663 + -0.4
4,040,664 - +0.9
4,040,664 - -0.6
4,040,664 - -0.2
4,040,680 + +0.3
4,040,680 + +0.5
4,040,680 + +0.0
4,040,680 + -0.7
4,040,680 + -1.2
4,040,681 - -0.7
4,040,681 - -0.4
4,040,687 + +0.8
4,040,687 + -0.4
4,040,688 - +0.3
4,040,688 - -0.7
4,040,688 - +1.1

Or see this region's nucleotide sequence