Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16815 and AO353_16820 are separated by 504 nucleotides AO353_16820 and AO353_16825 are separated by 8 nucleotides AO353_16825 and AO353_16830 are separated by 190 nucleotides
AO353_16815: AO353_16815 - cytochrome D ubiquinol oxidase subunit II, at 3,723,148 to 3,724,269
_16815
AO353_16820: AO353_16820 - hypothetical protein, at 3,724,774 to 3,724,968
_16820
AO353_16825: AO353_16825 - hypothetical protein, at 3,724,977 to 3,725,402
_16825
AO353_16830: AO353_16830 - hypothetical protein, at 3,725,593 to 3,726,351
_16830
Position (kb)
3724
3725
3726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3723.987 kb on + strand, within AO353_16815 at 3723.987 kb on + strand, within AO353_16815 at 3723.987 kb on + strand, within AO353_16815 at 3723.987 kb on + strand, within AO353_16815 at 3724.167 kb on + strand at 3724.168 kb on - strand at 3724.263 kb on - strand at 3724.284 kb on + strand at 3724.285 kb on - strand at 3724.285 kb on - strand at 3724.285 kb on - strand at 3724.285 kb on - strand at 3724.370 kb on + strand at 3724.370 kb on + strand at 3724.371 kb on - strand at 3724.437 kb on - strand at 3724.508 kb on - strand at 3724.508 kb on - strand at 3724.508 kb on - strand at 3724.508 kb on - strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.518 kb on - strand at 3724.529 kb on - strand at 3724.529 kb on - strand at 3724.529 kb on - strand at 3724.529 kb on - strand at 3724.593 kb on + strand at 3724.593 kb on + strand at 3724.593 kb on + strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.594 kb on - strand at 3724.660 kb on + strand at 3724.668 kb on + strand at 3724.668 kb on + strand at 3724.668 kb on + strand at 3724.668 kb on + strand at 3724.669 kb on - strand at 3724.669 kb on - strand at 3724.669 kb on - strand at 3724.774 kb on - strand at 3724.810 kb on + strand, within AO353_16820 at 3724.811 kb on - strand, within AO353_16820 at 3724.903 kb on + strand, within AO353_16820 at 3724.904 kb on - strand, within AO353_16820 at 3724.970 kb on + strand at 3724.970 kb on + strand at 3724.970 kb on + strand at 3724.971 kb on - strand at 3724.971 kb on - strand at 3724.971 kb on - strand at 3724.971 kb on - strand at 3724.979 kb on - strand at 3724.979 kb on - strand at 3724.979 kb on - strand at 3725.024 kb on - strand, within AO353_16825 at 3725.024 kb on - strand, within AO353_16825 at 3725.037 kb on + strand, within AO353_16825 at 3725.038 kb on - strand, within AO353_16825 at 3725.071 kb on + strand, within AO353_16825 at 3725.107 kb on + strand, within AO353_16825 at 3725.108 kb on - strand, within AO353_16825 at 3725.147 kb on - strand, within AO353_16825 at 3725.231 kb on + strand, within AO353_16825 at 3725.231 kb on + strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.232 kb on - strand, within AO353_16825 at 3725.233 kb on + strand, within AO353_16825 at 3725.283 kb on - strand, within AO353_16825 at 3725.283 kb on - strand, within AO353_16825 at 3725.390 kb on + strand at 3725.471 kb on + strand at 3725.472 kb on - strand at 3725.472 kb on - strand at 3725.472 kb on - strand at 3725.473 kb on + strand at 3725.473 kb on + strand at 3725.473 kb on + strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.474 kb on - strand at 3725.520 kb on + strand at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.709 kb on + strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.710 kb on - strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.738 kb on + strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.739 kb on - strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.742 kb on + strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.743 kb on - strand, within AO353_16830 at 3725.853 kb on + strand, within AO353_16830 at 3725.854 kb on - strand, within AO353_16830 at 3725.854 kb on - strand, within AO353_16830 at 3725.865 kb on + strand, within AO353_16830 at 3725.865 kb on + strand, within AO353_16830 at 3725.865 kb on + strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.866 kb on - strand, within AO353_16830 at 3725.932 kb on + strand, within AO353_16830 at 3725.932 kb on + strand, within AO353_16830 at 3725.932 kb on + strand, within AO353_16830 at 3725.932 kb on + strand, within AO353_16830 at 3725.933 kb on - strand, within AO353_16830 at 3725.933 kb on - strand, within AO353_16830 at 3725.953 kb on + strand, within AO353_16830 at 3725.953 kb on + strand, within AO353_16830 at 3725.953 kb on + strand, within AO353_16830 at 3725.953 kb on + strand, within AO353_16830 at 3725.953 kb on + strand, within AO353_16830 at 3725.954 kb on - strand, within AO353_16830 at 3725.954 kb on - strand, within AO353_16830 at 3725.954 kb on - strand, within AO353_16830 at 3726.070 kb on + strand, within AO353_16830 at 3726.071 kb on - strand, within AO353_16830 at 3726.203 kb on + strand, within AO353_16830 at 3726.203 kb on + strand, within AO353_16830 at 3726.203 kb on + strand, within AO353_16830 at 3726.203 kb on + strand, within AO353_16830 at 3726.203 kb on + strand, within AO353_16830 at 3726.204 kb on - strand, within AO353_16830 at 3726.204 kb on - strand, within AO353_16830 at 3726.204 kb on - strand, within AO353_16830 at 3726.229 kb on + strand, within AO353_16830 at 3726.229 kb on + strand, within AO353_16830 at 3726.229 kb on + strand, within AO353_16830 at 3726.230 kb on - strand, within AO353_16830 at 3726.230 kb on - strand, within AO353_16830 at 3726.230 kb on - strand, within AO353_16830 at 3726.230 kb on - strand, within AO353_16830 at 3726.253 kb on + strand, within AO353_16830 at 3726.253 kb on + strand, within AO353_16830 at 3726.253 kb on + strand, within AO353_16830 at 3726.253 kb on + strand, within AO353_16830 at 3726.253 kb on + strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.254 kb on - strand, within AO353_16830 at 3726.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,723,987 + AO353_16815 0.75 -0.8 3,723,987 + AO353_16815 0.75 -0.5 3,723,987 + AO353_16815 0.75 -1.1 3,723,987 + AO353_16815 0.75 +0.2 3,724,167 + -1.6 3,724,168 - +0.7 3,724,263 - -1.0 3,724,284 + +0.4 3,724,285 - +1.5 3,724,285 - +0.6 3,724,285 - +0.5 3,724,285 - +0.7 3,724,370 + +0.9 3,724,370 + +0.1 3,724,371 - +0.4 3,724,437 - +1.1 3,724,508 - +0.7 3,724,508 - +0.7 3,724,508 - -0.8 3,724,508 - -0.1 3,724,517 + +0.4 3,724,517 + -0.0 3,724,517 + +1.2 3,724,517 + -0.2 3,724,517 + -0.3 3,724,517 + +0.3 3,724,517 + +0.9 3,724,517 + +0.7 3,724,517 + +0.2 3,724,517 + -0.7 3,724,517 + +0.8 3,724,517 + +1.0 3,724,517 + +0.6 3,724,518 - +1.2 3,724,518 - +1.1 3,724,518 - +1.6 3,724,518 - +1.1 3,724,518 - -0.3 3,724,518 - +1.4 3,724,518 - +0.7 3,724,518 - +1.2 3,724,518 - +1.1 3,724,518 - +0.6 3,724,518 - +1.3 3,724,529 - +0.8 3,724,529 - +2.2 3,724,529 - +0.7 3,724,529 - -0.4 3,724,593 + +1.0 3,724,593 + -1.7 3,724,593 + +0.3 3,724,594 - -0.2 3,724,594 - +0.5 3,724,594 - +0.5 3,724,594 - +1.0 3,724,594 - -0.0 3,724,594 - +0.3 3,724,594 - +0.4 3,724,660 + +1.2 3,724,668 + -0.6 3,724,668 + +0.5 3,724,668 + +0.7 3,724,668 + -1.4 3,724,669 - +2.5 3,724,669 - +1.2 3,724,669 - +0.7 3,724,774 - +1.1 3,724,810 + AO353_16820 0.18 +0.4 3,724,811 - AO353_16820 0.19 -0.9 3,724,903 + AO353_16820 0.66 -0.2 3,724,904 - AO353_16820 0.67 +1.0 3,724,970 + +1.1 3,724,970 + -0.2 3,724,970 + +0.7 3,724,971 - +0.8 3,724,971 - -0.6 3,724,971 - +1.3 3,724,971 - -0.7 3,724,979 - +0.7 3,724,979 - +0.9 3,724,979 - -0.8 3,725,024 - AO353_16825 0.11 -2.6 3,725,024 - AO353_16825 0.11 -1.3 3,725,037 + AO353_16825 0.14 -1.9 3,725,038 - AO353_16825 0.14 -0.9 3,725,071 + AO353_16825 0.22 -0.6 3,725,107 + AO353_16825 0.31 +0.5 3,725,108 - AO353_16825 0.31 -0.8 3,725,147 - AO353_16825 0.40 -1.8 3,725,231 + AO353_16825 0.60 -1.3 3,725,231 + AO353_16825 0.60 -0.9 3,725,232 - AO353_16825 0.60 -2.5 3,725,232 - AO353_16825 0.60 -3.7 3,725,232 - AO353_16825 0.60 -2.0 3,725,232 - AO353_16825 0.60 -2.1 3,725,232 - AO353_16825 0.60 -1.8 3,725,232 - AO353_16825 0.60 -1.6 3,725,232 - AO353_16825 0.60 +0.2 3,725,232 - AO353_16825 0.60 -2.3 3,725,232 - AO353_16825 0.60 -0.2 3,725,232 - AO353_16825 0.60 +0.2 3,725,233 + AO353_16825 0.60 -0.1 3,725,283 - AO353_16825 0.72 +2.2 3,725,283 - AO353_16825 0.72 -1.1 3,725,390 + +0.4 3,725,471 + -2.7 3,725,472 - +1.4 3,725,472 - +1.9 3,725,472 - -0.7 3,725,473 + +1.1 3,725,473 + +1.2 3,725,473 + +0.8 3,725,474 - +0.7 3,725,474 - -1.5 3,725,474 - +0.2 3,725,474 - +1.2 3,725,474 - +1.1 3,725,474 - +1.6 3,725,474 - +1.2 3,725,474 - -0.1 3,725,520 + -0.5 3,725,709 + AO353_16830 0.15 -0.9 3,725,709 + AO353_16830 0.15 -0.2 3,725,709 + AO353_16830 0.15 +0.3 3,725,709 + AO353_16830 0.15 -0.5 3,725,709 + AO353_16830 0.15 -0.0 3,725,709 + AO353_16830 0.15 +0.3 3,725,709 + AO353_16830 0.15 -0.4 3,725,710 - AO353_16830 0.15 -2.5 3,725,710 - AO353_16830 0.15 -1.6 3,725,710 - AO353_16830 0.15 -0.9 3,725,710 - AO353_16830 0.15 -1.8 3,725,710 - AO353_16830 0.15 +0.4 3,725,710 - AO353_16830 0.15 +1.2 3,725,710 - AO353_16830 0.15 +1.3 3,725,710 - AO353_16830 0.15 +0.9 3,725,710 - AO353_16830 0.15 +0.1 3,725,738 + AO353_16830 0.19 -1.5 3,725,738 + AO353_16830 0.19 +1.5 3,725,738 + AO353_16830 0.19 -0.4 3,725,738 + AO353_16830 0.19 +0.8 3,725,738 + AO353_16830 0.19 +0.7 3,725,738 + AO353_16830 0.19 -0.3 3,725,738 + AO353_16830 0.19 +1.2 3,725,738 + AO353_16830 0.19 -0.2 3,725,738 + AO353_16830 0.19 +1.3 3,725,738 + AO353_16830 0.19 +0.6 3,725,739 - AO353_16830 0.19 +0.7 3,725,739 - AO353_16830 0.19 +1.5 3,725,739 - AO353_16830 0.19 -0.6 3,725,739 - AO353_16830 0.19 +1.0 3,725,739 - AO353_16830 0.19 +1.4 3,725,739 - AO353_16830 0.19 -0.7 3,725,739 - AO353_16830 0.19 +0.0 3,725,742 + AO353_16830 0.20 +0.8 3,725,742 + AO353_16830 0.20 +0.2 3,725,742 + AO353_16830 0.20 -1.8 3,725,742 + AO353_16830 0.20 -1.0 3,725,742 + AO353_16830 0.20 +0.7 3,725,742 + AO353_16830 0.20 -0.7 3,725,742 + AO353_16830 0.20 +0.2 3,725,742 + AO353_16830 0.20 -1.5 3,725,742 + AO353_16830 0.20 +0.7 3,725,742 + AO353_16830 0.20 +0.0 3,725,742 + AO353_16830 0.20 +1.9 3,725,742 + AO353_16830 0.20 -0.3 3,725,742 + AO353_16830 0.20 -0.0 3,725,742 + AO353_16830 0.20 -0.2 3,725,742 + AO353_16830 0.20 +0.5 3,725,743 - AO353_16830 0.20 -0.2 3,725,743 - AO353_16830 0.20 -0.4 3,725,743 - AO353_16830 0.20 +1.4 3,725,743 - AO353_16830 0.20 -1.8 3,725,743 - AO353_16830 0.20 +1.1 3,725,743 - AO353_16830 0.20 -0.1 3,725,743 - AO353_16830 0.20 -1.7 3,725,743 - AO353_16830 0.20 -1.3 3,725,743 - AO353_16830 0.20 -0.8 3,725,743 - AO353_16830 0.20 +0.9 3,725,743 - AO353_16830 0.20 +1.9 3,725,743 - AO353_16830 0.20 -1.0 3,725,743 - AO353_16830 0.20 -0.9 3,725,743 - AO353_16830 0.20 -0.4 3,725,743 - AO353_16830 0.20 +0.2 3,725,743 - AO353_16830 0.20 -1.1 3,725,743 - AO353_16830 0.20 +0.3 3,725,743 - AO353_16830 0.20 +1.3 3,725,853 + AO353_16830 0.34 -0.3 3,725,854 - AO353_16830 0.34 +0.1 3,725,854 - AO353_16830 0.34 +0.7 3,725,865 + AO353_16830 0.36 -1.9 3,725,865 + AO353_16830 0.36 +1.4 3,725,865 + AO353_16830 0.36 +0.8 3,725,866 - AO353_16830 0.36 -1.2 3,725,866 - AO353_16830 0.36 +0.7 3,725,866 - AO353_16830 0.36 +1.4 3,725,866 - AO353_16830 0.36 +0.2 3,725,866 - AO353_16830 0.36 +0.5 3,725,866 - AO353_16830 0.36 -1.1 3,725,866 - AO353_16830 0.36 -0.2 3,725,932 + AO353_16830 0.45 +0.7 3,725,932 + AO353_16830 0.45 +0.2 3,725,932 + AO353_16830 0.45 -0.9 3,725,932 + AO353_16830 0.45 +0.2 3,725,933 - AO353_16830 0.45 +1.7 3,725,933 - AO353_16830 0.45 +1.2 3,725,953 + AO353_16830 0.47 -0.8 3,725,953 + AO353_16830 0.47 +0.2 3,725,953 + AO353_16830 0.47 -0.4 3,725,953 + AO353_16830 0.47 +0.3 3,725,953 + AO353_16830 0.47 -1.2 3,725,954 - AO353_16830 0.48 +1.2 3,725,954 - AO353_16830 0.48 +0.3 3,725,954 - AO353_16830 0.48 +1.7 3,726,070 + AO353_16830 0.63 -2.8 3,726,071 - AO353_16830 0.63 -0.2 3,726,203 + AO353_16830 0.80 -1.8 3,726,203 + AO353_16830 0.80 -0.8 3,726,203 + AO353_16830 0.80 -2.5 3,726,203 + AO353_16830 0.80 +0.3 3,726,203 + AO353_16830 0.80 -1.9 3,726,204 - AO353_16830 0.81 +0.2 3,726,204 - AO353_16830 0.81 +2.2 3,726,204 - AO353_16830 0.81 -0.3 3,726,229 + AO353_16830 0.84 -1.0 3,726,229 + AO353_16830 0.84 -1.1 3,726,229 + AO353_16830 0.84 -2.1 3,726,230 - AO353_16830 0.84 +0.4 3,726,230 - AO353_16830 0.84 -0.7 3,726,230 - AO353_16830 0.84 +0.1 3,726,230 - AO353_16830 0.84 +0.2 3,726,253 + AO353_16830 0.87 -1.7 3,726,253 + AO353_16830 0.87 +0.2 3,726,253 + AO353_16830 0.87 -1.8 3,726,253 + AO353_16830 0.87 -1.1 3,726,253 + AO353_16830 0.87 -0.8 3,726,254 - AO353_16830 0.87 +0.5 3,726,254 - AO353_16830 0.87 -1.9 3,726,254 - AO353_16830 0.87 +1.1 3,726,254 - AO353_16830 0.87 +0.2 3,726,254 - AO353_16830 0.87 -0.6 3,726,254 - AO353_16830 0.87 +0.5 3,726,254 - AO353_16830 0.87 +0.1 3,726,303 + -3.0
Or see this region's nucleotide sequence