Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16825

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16815 and AO353_16820 are separated by 504 nucleotidesAO353_16820 and AO353_16825 are separated by 8 nucleotidesAO353_16825 and AO353_16830 are separated by 190 nucleotides AO353_16815: AO353_16815 - cytochrome D ubiquinol oxidase subunit II, at 3,723,148 to 3,724,269 _16815 AO353_16820: AO353_16820 - hypothetical protein, at 3,724,774 to 3,724,968 _16820 AO353_16825: AO353_16825 - hypothetical protein, at 3,724,977 to 3,725,402 _16825 AO353_16830: AO353_16830 - hypothetical protein, at 3,725,593 to 3,726,351 _16830 Position (kb) 3724 3725 3726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3724.167 kb on + strandat 3724.168 kb on - strandat 3724.263 kb on - strandat 3724.284 kb on + strandat 3724.285 kb on - strandat 3724.285 kb on - strandat 3724.285 kb on - strandat 3724.285 kb on - strandat 3724.370 kb on + strandat 3724.370 kb on + strandat 3724.371 kb on - strandat 3724.437 kb on - strandat 3724.508 kb on - strandat 3724.508 kb on - strandat 3724.508 kb on - strandat 3724.508 kb on - strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.517 kb on + strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.518 kb on - strandat 3724.529 kb on - strandat 3724.529 kb on - strandat 3724.529 kb on - strandat 3724.529 kb on - strandat 3724.593 kb on + strandat 3724.593 kb on + strandat 3724.593 kb on + strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.594 kb on - strandat 3724.660 kb on + strandat 3724.668 kb on + strandat 3724.668 kb on + strandat 3724.668 kb on + strandat 3724.668 kb on + strandat 3724.669 kb on - strandat 3724.669 kb on - strandat 3724.669 kb on - strandat 3724.774 kb on - strandat 3724.810 kb on + strand, within AO353_16820at 3724.811 kb on - strand, within AO353_16820at 3724.903 kb on + strand, within AO353_16820at 3724.904 kb on - strand, within AO353_16820at 3724.970 kb on + strandat 3724.970 kb on + strandat 3724.970 kb on + strandat 3724.971 kb on - strandat 3724.971 kb on - strandat 3724.971 kb on - strandat 3724.971 kb on - strandat 3724.979 kb on - strandat 3724.979 kb on - strandat 3724.979 kb on - strandat 3725.024 kb on - strand, within AO353_16825at 3725.024 kb on - strand, within AO353_16825at 3725.037 kb on + strand, within AO353_16825at 3725.038 kb on - strand, within AO353_16825at 3725.071 kb on + strand, within AO353_16825at 3725.107 kb on + strand, within AO353_16825at 3725.108 kb on - strand, within AO353_16825at 3725.147 kb on - strand, within AO353_16825at 3725.231 kb on + strand, within AO353_16825at 3725.231 kb on + strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.232 kb on - strand, within AO353_16825at 3725.233 kb on + strand, within AO353_16825at 3725.283 kb on - strand, within AO353_16825at 3725.283 kb on - strand, within AO353_16825at 3725.390 kb on + strandat 3725.471 kb on + strandat 3725.472 kb on - strandat 3725.472 kb on - strandat 3725.472 kb on - strandat 3725.473 kb on + strandat 3725.473 kb on + strandat 3725.473 kb on + strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.474 kb on - strandat 3725.520 kb on + strandat 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.709 kb on + strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.710 kb on - strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.738 kb on + strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.739 kb on - strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.742 kb on + strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.743 kb on - strand, within AO353_16830at 3725.853 kb on + strand, within AO353_16830at 3725.854 kb on - strand, within AO353_16830at 3725.854 kb on - strand, within AO353_16830at 3725.865 kb on + strand, within AO353_16830at 3725.865 kb on + strand, within AO353_16830at 3725.865 kb on + strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.866 kb on - strand, within AO353_16830at 3725.932 kb on + strand, within AO353_16830at 3725.932 kb on + strand, within AO353_16830at 3725.932 kb on + strand, within AO353_16830at 3725.932 kb on + strand, within AO353_16830at 3725.933 kb on - strand, within AO353_16830at 3725.933 kb on - strand, within AO353_16830at 3725.953 kb on + strand, within AO353_16830at 3725.953 kb on + strand, within AO353_16830at 3725.953 kb on + strand, within AO353_16830at 3725.953 kb on + strand, within AO353_16830at 3725.953 kb on + strand, within AO353_16830at 3725.954 kb on - strand, within AO353_16830at 3725.954 kb on - strand, within AO353_16830at 3725.954 kb on - strand, within AO353_16830at 3726.070 kb on + strand, within AO353_16830at 3726.071 kb on - strand, within AO353_16830at 3726.203 kb on + strand, within AO353_16830at 3726.203 kb on + strand, within AO353_16830at 3726.203 kb on + strand, within AO353_16830at 3726.203 kb on + strand, within AO353_16830at 3726.203 kb on + strand, within AO353_16830at 3726.204 kb on - strand, within AO353_16830at 3726.204 kb on - strand, within AO353_16830at 3726.204 kb on - strand, within AO353_16830at 3726.229 kb on + strand, within AO353_16830at 3726.229 kb on + strand, within AO353_16830at 3726.229 kb on + strand, within AO353_16830at 3726.230 kb on - strand, within AO353_16830at 3726.230 kb on - strand, within AO353_16830at 3726.230 kb on - strand, within AO353_16830at 3726.230 kb on - strand, within AO353_16830at 3726.253 kb on + strand, within AO353_16830at 3726.253 kb on + strand, within AO353_16830at 3726.253 kb on + strand, within AO353_16830at 3726.253 kb on + strand, within AO353_16830at 3726.253 kb on + strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.254 kb on - strand, within AO353_16830at 3726.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,723,987 + AO353_16815 0.75 -0.8
3,723,987 + AO353_16815 0.75 -0.5
3,723,987 + AO353_16815 0.75 -1.1
3,723,987 + AO353_16815 0.75 +0.2
3,724,167 + -1.6
3,724,168 - +0.7
3,724,263 - -1.0
3,724,284 + +0.4
3,724,285 - +1.5
3,724,285 - +0.6
3,724,285 - +0.5
3,724,285 - +0.7
3,724,370 + +0.9
3,724,370 + +0.1
3,724,371 - +0.4
3,724,437 - +1.1
3,724,508 - +0.7
3,724,508 - +0.7
3,724,508 - -0.8
3,724,508 - -0.1
3,724,517 + +0.4
3,724,517 + -0.0
3,724,517 + +1.2
3,724,517 + -0.2
3,724,517 + -0.3
3,724,517 + +0.3
3,724,517 + +0.9
3,724,517 + +0.7
3,724,517 + +0.2
3,724,517 + -0.7
3,724,517 + +0.8
3,724,517 + +1.0
3,724,517 + +0.6
3,724,518 - +1.2
3,724,518 - +1.1
3,724,518 - +1.6
3,724,518 - +1.1
3,724,518 - -0.3
3,724,518 - +1.4
3,724,518 - +0.7
3,724,518 - +1.2
3,724,518 - +1.1
3,724,518 - +0.6
3,724,518 - +1.3
3,724,529 - +0.8
3,724,529 - +2.2
3,724,529 - +0.7
3,724,529 - -0.4
3,724,593 + +1.0
3,724,593 + -1.7
3,724,593 + +0.3
3,724,594 - -0.2
3,724,594 - +0.5
3,724,594 - +0.5
3,724,594 - +1.0
3,724,594 - -0.0
3,724,594 - +0.3
3,724,594 - +0.4
3,724,660 + +1.2
3,724,668 + -0.6
3,724,668 + +0.5
3,724,668 + +0.7
3,724,668 + -1.4
3,724,669 - +2.5
3,724,669 - +1.2
3,724,669 - +0.7
3,724,774 - +1.1
3,724,810 + AO353_16820 0.18 +0.4
3,724,811 - AO353_16820 0.19 -0.9
3,724,903 + AO353_16820 0.66 -0.2
3,724,904 - AO353_16820 0.67 +1.0
3,724,970 + +1.1
3,724,970 + -0.2
3,724,970 + +0.7
3,724,971 - +0.8
3,724,971 - -0.6
3,724,971 - +1.3
3,724,971 - -0.7
3,724,979 - +0.7
3,724,979 - +0.9
3,724,979 - -0.8
3,725,024 - AO353_16825 0.11 -2.6
3,725,024 - AO353_16825 0.11 -1.3
3,725,037 + AO353_16825 0.14 -1.9
3,725,038 - AO353_16825 0.14 -0.9
3,725,071 + AO353_16825 0.22 -0.6
3,725,107 + AO353_16825 0.31 +0.5
3,725,108 - AO353_16825 0.31 -0.8
3,725,147 - AO353_16825 0.40 -1.8
3,725,231 + AO353_16825 0.60 -1.3
3,725,231 + AO353_16825 0.60 -0.9
3,725,232 - AO353_16825 0.60 -2.5
3,725,232 - AO353_16825 0.60 -3.7
3,725,232 - AO353_16825 0.60 -2.0
3,725,232 - AO353_16825 0.60 -2.1
3,725,232 - AO353_16825 0.60 -1.8
3,725,232 - AO353_16825 0.60 -1.6
3,725,232 - AO353_16825 0.60 +0.2
3,725,232 - AO353_16825 0.60 -2.3
3,725,232 - AO353_16825 0.60 -0.2
3,725,232 - AO353_16825 0.60 +0.2
3,725,233 + AO353_16825 0.60 -0.1
3,725,283 - AO353_16825 0.72 +2.2
3,725,283 - AO353_16825 0.72 -1.1
3,725,390 + +0.4
3,725,471 + -2.7
3,725,472 - +1.4
3,725,472 - +1.9
3,725,472 - -0.7
3,725,473 + +1.1
3,725,473 + +1.2
3,725,473 + +0.8
3,725,474 - +0.7
3,725,474 - -1.5
3,725,474 - +0.2
3,725,474 - +1.2
3,725,474 - +1.1
3,725,474 - +1.6
3,725,474 - +1.2
3,725,474 - -0.1
3,725,520 + -0.5
3,725,709 + AO353_16830 0.15 -0.9
3,725,709 + AO353_16830 0.15 -0.2
3,725,709 + AO353_16830 0.15 +0.3
3,725,709 + AO353_16830 0.15 -0.5
3,725,709 + AO353_16830 0.15 -0.0
3,725,709 + AO353_16830 0.15 +0.3
3,725,709 + AO353_16830 0.15 -0.4
3,725,710 - AO353_16830 0.15 -2.5
3,725,710 - AO353_16830 0.15 -1.6
3,725,710 - AO353_16830 0.15 -0.9
3,725,710 - AO353_16830 0.15 -1.8
3,725,710 - AO353_16830 0.15 +0.4
3,725,710 - AO353_16830 0.15 +1.2
3,725,710 - AO353_16830 0.15 +1.3
3,725,710 - AO353_16830 0.15 +0.9
3,725,710 - AO353_16830 0.15 +0.1
3,725,738 + AO353_16830 0.19 -1.5
3,725,738 + AO353_16830 0.19 +1.5
3,725,738 + AO353_16830 0.19 -0.4
3,725,738 + AO353_16830 0.19 +0.8
3,725,738 + AO353_16830 0.19 +0.7
3,725,738 + AO353_16830 0.19 -0.3
3,725,738 + AO353_16830 0.19 +1.2
3,725,738 + AO353_16830 0.19 -0.2
3,725,738 + AO353_16830 0.19 +1.3
3,725,738 + AO353_16830 0.19 +0.6
3,725,739 - AO353_16830 0.19 +0.7
3,725,739 - AO353_16830 0.19 +1.5
3,725,739 - AO353_16830 0.19 -0.6
3,725,739 - AO353_16830 0.19 +1.0
3,725,739 - AO353_16830 0.19 +1.4
3,725,739 - AO353_16830 0.19 -0.7
3,725,739 - AO353_16830 0.19 +0.0
3,725,742 + AO353_16830 0.20 +0.8
3,725,742 + AO353_16830 0.20 +0.2
3,725,742 + AO353_16830 0.20 -1.8
3,725,742 + AO353_16830 0.20 -1.0
3,725,742 + AO353_16830 0.20 +0.7
3,725,742 + AO353_16830 0.20 -0.7
3,725,742 + AO353_16830 0.20 +0.2
3,725,742 + AO353_16830 0.20 -1.5
3,725,742 + AO353_16830 0.20 +0.7
3,725,742 + AO353_16830 0.20 +0.0
3,725,742 + AO353_16830 0.20 +1.9
3,725,742 + AO353_16830 0.20 -0.3
3,725,742 + AO353_16830 0.20 -0.0
3,725,742 + AO353_16830 0.20 -0.2
3,725,742 + AO353_16830 0.20 +0.5
3,725,743 - AO353_16830 0.20 -0.2
3,725,743 - AO353_16830 0.20 -0.4
3,725,743 - AO353_16830 0.20 +1.4
3,725,743 - AO353_16830 0.20 -1.8
3,725,743 - AO353_16830 0.20 +1.1
3,725,743 - AO353_16830 0.20 -0.1
3,725,743 - AO353_16830 0.20 -1.7
3,725,743 - AO353_16830 0.20 -1.3
3,725,743 - AO353_16830 0.20 -0.8
3,725,743 - AO353_16830 0.20 +0.9
3,725,743 - AO353_16830 0.20 +1.9
3,725,743 - AO353_16830 0.20 -1.0
3,725,743 - AO353_16830 0.20 -0.9
3,725,743 - AO353_16830 0.20 -0.4
3,725,743 - AO353_16830 0.20 +0.2
3,725,743 - AO353_16830 0.20 -1.1
3,725,743 - AO353_16830 0.20 +0.3
3,725,743 - AO353_16830 0.20 +1.3
3,725,853 + AO353_16830 0.34 -0.3
3,725,854 - AO353_16830 0.34 +0.1
3,725,854 - AO353_16830 0.34 +0.7
3,725,865 + AO353_16830 0.36 -1.9
3,725,865 + AO353_16830 0.36 +1.4
3,725,865 + AO353_16830 0.36 +0.8
3,725,866 - AO353_16830 0.36 -1.2
3,725,866 - AO353_16830 0.36 +0.7
3,725,866 - AO353_16830 0.36 +1.4
3,725,866 - AO353_16830 0.36 +0.2
3,725,866 - AO353_16830 0.36 +0.5
3,725,866 - AO353_16830 0.36 -1.1
3,725,866 - AO353_16830 0.36 -0.2
3,725,932 + AO353_16830 0.45 +0.7
3,725,932 + AO353_16830 0.45 +0.2
3,725,932 + AO353_16830 0.45 -0.9
3,725,932 + AO353_16830 0.45 +0.2
3,725,933 - AO353_16830 0.45 +1.7
3,725,933 - AO353_16830 0.45 +1.2
3,725,953 + AO353_16830 0.47 -0.8
3,725,953 + AO353_16830 0.47 +0.2
3,725,953 + AO353_16830 0.47 -0.4
3,725,953 + AO353_16830 0.47 +0.3
3,725,953 + AO353_16830 0.47 -1.2
3,725,954 - AO353_16830 0.48 +1.2
3,725,954 - AO353_16830 0.48 +0.3
3,725,954 - AO353_16830 0.48 +1.7
3,726,070 + AO353_16830 0.63 -2.8
3,726,071 - AO353_16830 0.63 -0.2
3,726,203 + AO353_16830 0.80 -1.8
3,726,203 + AO353_16830 0.80 -0.8
3,726,203 + AO353_16830 0.80 -2.5
3,726,203 + AO353_16830 0.80 +0.3
3,726,203 + AO353_16830 0.80 -1.9
3,726,204 - AO353_16830 0.81 +0.2
3,726,204 - AO353_16830 0.81 +2.2
3,726,204 - AO353_16830 0.81 -0.3
3,726,229 + AO353_16830 0.84 -1.0
3,726,229 + AO353_16830 0.84 -1.1
3,726,229 + AO353_16830 0.84 -2.1
3,726,230 - AO353_16830 0.84 +0.4
3,726,230 - AO353_16830 0.84 -0.7
3,726,230 - AO353_16830 0.84 +0.1
3,726,230 - AO353_16830 0.84 +0.2
3,726,253 + AO353_16830 0.87 -1.7
3,726,253 + AO353_16830 0.87 +0.2
3,726,253 + AO353_16830 0.87 -1.8
3,726,253 + AO353_16830 0.87 -1.1
3,726,253 + AO353_16830 0.87 -0.8
3,726,254 - AO353_16830 0.87 +0.5
3,726,254 - AO353_16830 0.87 -1.9
3,726,254 - AO353_16830 0.87 +1.1
3,726,254 - AO353_16830 0.87 +0.2
3,726,254 - AO353_16830 0.87 -0.6
3,726,254 - AO353_16830 0.87 +0.5
3,726,254 - AO353_16830 0.87 +0.1
3,726,303 + -3.0

Or see this region's nucleotide sequence