Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15820

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15815 and AO353_15820 are separated by 146 nucleotidesAO353_15820 and AO353_15825 are separated by 2 nucleotidesAO353_15825 and AO353_15830 are separated by 189 nucleotides AO353_15815: AO353_15815 - inositol monophosphatase, at 3,494,081 to 3,494,899 _15815 AO353_15820: AO353_15820 - RNA methyltransferase, at 3,495,046 to 3,495,816 _15820 AO353_15825: AO353_15825 - serine acetyltransferase, at 3,495,819 to 3,496,595 _15825 AO353_15830: AO353_15830 - transcriptional regulator, at 3,496,785 to 3,497,276 _15830 Position (kb) 3495 3496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3494.941 kb on - strandat 3494.982 kb on + strandat 3494.982 kb on + strandat 3494.983 kb on - strandat 3494.983 kb on - strandat 3494.993 kb on + strandat 3495.006 kb on - strandat 3495.006 kb on - strandat 3495.020 kb on - strandat 3495.020 kb on - strandat 3495.020 kb on - strandat 3495.436 kb on + strand, within AO353_15820at 3495.508 kb on + strand, within AO353_15820at 3495.508 kb on + strand, within AO353_15820at 3495.508 kb on + strand, within AO353_15820at 3495.508 kb on + strand, within AO353_15820at 3495.508 kb on + strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.509 kb on - strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.625 kb on + strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.626 kb on - strand, within AO353_15820at 3495.712 kb on + strand, within AO353_15820at 3495.712 kb on + strand, within AO353_15820at 3495.713 kb on - strand, within AO353_15820at 3495.713 kb on - strand, within AO353_15820at 3495.713 kb on - strand, within AO353_15820at 3495.747 kb on + strandat 3495.747 kb on + strandat 3495.747 kb on + strandat 3495.748 kb on - strandat 3495.748 kb on - strandat 3495.801 kb on + strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.842 kb on + strandat 3495.842 kb on + strandat 3495.843 kb on - strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.879 kb on - strandat 3495.879 kb on - strandat 3495.879 kb on - strandat 3496.055 kb on + strand, within AO353_15825at 3496.056 kb on - strand, within AO353_15825at 3496.056 kb on - strand, within AO353_15825at 3496.119 kb on + strand, within AO353_15825at 3496.120 kb on - strand, within AO353_15825at 3496.189 kb on + strand, within AO353_15825at 3496.190 kb on - strand, within AO353_15825at 3496.190 kb on - strand, within AO353_15825at 3496.390 kb on - strand, within AO353_15825at 3496.515 kb on + strand, within AO353_15825at 3496.516 kb on - strand, within AO353_15825at 3496.593 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.652 kb on - strandat 3496.652 kb on - strandat 3496.652 kb on - strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.671 kb on - strandat 3496.671 kb on - strandat 3496.671 kb on - strandat 3496.776 kb on + strandat 3496.776 kb on + strandat 3496.776 kb on + strandat 3496.796 kb on + strandat 3496.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,494,941 - -0.6
3,494,982 + -0.1
3,494,982 + -1.5
3,494,983 - +0.0
3,494,983 - +0.7
3,494,993 + -0.2
3,495,006 - -0.6
3,495,006 - +0.0
3,495,020 - -0.4
3,495,020 - -0.2
3,495,020 - -1.0
3,495,436 + AO353_15820 0.51 +0.3
3,495,508 + AO353_15820 0.60 -0.1
3,495,508 + AO353_15820 0.60 -2.0
3,495,508 + AO353_15820 0.60 +0.9
3,495,508 + AO353_15820 0.60 -2.2
3,495,508 + AO353_15820 0.60 +1.0
3,495,509 - AO353_15820 0.60 -1.1
3,495,509 - AO353_15820 0.60 -0.9
3,495,509 - AO353_15820 0.60 -0.1
3,495,509 - AO353_15820 0.60 +0.5
3,495,509 - AO353_15820 0.60 -1.0
3,495,509 - AO353_15820 0.60 -0.2
3,495,509 - AO353_15820 0.60 -1.7
3,495,625 + AO353_15820 0.75 -0.9
3,495,625 + AO353_15820 0.75 -1.6
3,495,625 + AO353_15820 0.75 -1.4
3,495,625 + AO353_15820 0.75 +0.8
3,495,625 + AO353_15820 0.75 -1.5
3,495,625 + AO353_15820 0.75 -0.8
3,495,625 + AO353_15820 0.75 -0.2
3,495,625 + AO353_15820 0.75 +0.6
3,495,626 - AO353_15820 0.75 -0.8
3,495,626 - AO353_15820 0.75 -0.1
3,495,626 - AO353_15820 0.75 -1.4
3,495,626 - AO353_15820 0.75 -1.4
3,495,626 - AO353_15820 0.75 -1.8
3,495,626 - AO353_15820 0.75 -1.6
3,495,626 - AO353_15820 0.75 -2.0
3,495,626 - AO353_15820 0.75 -0.0
3,495,626 - AO353_15820 0.75 -1.1
3,495,712 + AO353_15820 0.86 +0.5
3,495,712 + AO353_15820 0.86 -1.2
3,495,713 - AO353_15820 0.87 -0.3
3,495,713 - AO353_15820 0.87 -0.6
3,495,713 - AO353_15820 0.87 +0.4
3,495,747 + -2.4
3,495,747 + -0.9
3,495,747 + -0.6
3,495,748 - -0.8
3,495,748 - -0.5
3,495,801 + -0.5
3,495,802 - -2.9
3,495,802 - +0.8
3,495,802 - -1.4
3,495,802 - -1.5
3,495,842 + -0.1
3,495,842 + -0.3
3,495,843 - -0.7
3,495,878 + +0.5
3,495,878 + +1.1
3,495,878 + +0.1
3,495,878 + +0.3
3,495,878 + -0.0
3,495,878 + +0.1
3,495,878 + -0.1
3,495,879 - +0.7
3,495,879 - +0.5
3,495,879 - +0.6
3,496,055 + AO353_15825 0.30 +0.8
3,496,056 - AO353_15825 0.31 +0.1
3,496,056 - AO353_15825 0.31 +0.4
3,496,119 + AO353_15825 0.39 -1.4
3,496,120 - AO353_15825 0.39 +0.7
3,496,189 + AO353_15825 0.48 -1.6
3,496,190 - AO353_15825 0.48 +0.4
3,496,190 - AO353_15825 0.48 -0.1
3,496,390 - AO353_15825 0.73 -1.4
3,496,515 + AO353_15825 0.90 -1.7
3,496,516 - AO353_15825 0.90 +0.4
3,496,593 + -0.1
3,496,651 + +2.6
3,496,651 + +0.6
3,496,651 + +0.6
3,496,651 + +0.0
3,496,651 + +1.1
3,496,651 + +0.6
3,496,651 + -0.2
3,496,651 + +0.5
3,496,651 + +0.4
3,496,651 + -0.2
3,496,652 - +1.7
3,496,652 - -0.9
3,496,652 - +0.2
3,496,668 + -0.2
3,496,668 + -1.8
3,496,668 + -0.4
3,496,668 + +0.3
3,496,668 + -0.2
3,496,668 + -0.1
3,496,669 - +0.1
3,496,669 - +0.3
3,496,669 - +0.8
3,496,669 - -0.4
3,496,670 + -1.3
3,496,670 + +0.6
3,496,670 + +0.2
3,496,670 + +1.7
3,496,671 - +0.0
3,496,671 - +1.6
3,496,671 - +0.0
3,496,776 + +0.0
3,496,776 + -2.5
3,496,776 + -2.2
3,496,796 + -1.2
3,496,796 + -3.1

Or see this region's nucleotide sequence