Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10430

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10420 and AO353_10425 are separated by 16 nucleotidesAO353_10425 and AO353_10430 are separated by 148 nucleotidesAO353_10430 and AO353_10435 are separated by 9 nucleotidesAO353_10435 and AO353_10440 are separated by 18 nucleotides AO353_10420: AO353_10420 - ATP synthase F0F1 subunit A, at 2,283,253 to 2,284,122 _10420 AO353_10425: AO353_10425 - ATP synthase F0F1 subunit I, at 2,284,139 to 2,284,546 _10425 AO353_10430: AO353_10430 - chromosome partitioning protein ParB, at 2,284,695 to 2,285,567 _10430 AO353_10435: AO353_10435 - chromosome partitioning protein, at 2,285,577 to 2,286,374 _10435 AO353_10440: AO353_10440 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 2,286,393 to 2,287,037 _10440 Position (kb) 2284 2285 2286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2284.488 kb on - strand, within AO353_10425at 2284.595 kb on - strandat 2284.624 kb on - strandat 2284.626 kb on - strandat 2284.626 kb on - strandat 2284.626 kb on - strandat 2284.659 kb on - strandat 2284.659 kb on - strandat 2284.680 kb on - strandat 2284.680 kb on - strandat 2284.704 kb on - strandat 2284.704 kb on - strandat 2284.704 kb on - strandat 2284.704 kb on - strandat 2284.742 kb on - strandat 2284.801 kb on - strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.579 kb on - strandat 2285.650 kb on + strandat 2285.651 kb on - strandat 2285.680 kb on + strand, within AO353_10435at 2285.680 kb on + strand, within AO353_10435at 2285.680 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.749 kb on + strand, within AO353_10435at 2285.749 kb on + strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.920 kb on + strand, within AO353_10435at 2285.921 kb on - strand, within AO353_10435at 2285.939 kb on + strand, within AO353_10435at 2285.939 kb on + strand, within AO353_10435at 2285.940 kb on - strand, within AO353_10435at 2285.944 kb on - strand, within AO353_10435at 2286.013 kb on + strand, within AO353_10435at 2286.013 kb on + strand, within AO353_10435at 2286.014 kb on - strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.193 kb on + strand, within AO353_10435at 2286.193 kb on + strand, within AO353_10435at 2286.194 kb on - strand, within AO353_10435at 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.368 kb on + strandat 2286.411 kb on + strandat 2286.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,284,488 - AO353_10425 0.86 -1.4
2,284,595 - -0.7
2,284,624 - -1.5
2,284,626 - -2.1
2,284,626 - -0.4
2,284,626 - +2.5
2,284,659 - +0.9
2,284,659 - +2.2
2,284,680 - +1.7
2,284,680 - +1.1
2,284,704 - +1.5
2,284,704 - -1.3
2,284,704 - +0.2
2,284,704 - -1.3
2,284,742 - -1.1
2,284,801 - AO353_10430 0.12 -0.9
2,285,422 + AO353_10430 0.83 -1.5
2,285,422 + AO353_10430 0.83 -0.3
2,285,422 + AO353_10430 0.83 -0.0
2,285,422 + AO353_10430 0.83 -0.2
2,285,422 + AO353_10430 0.83 +0.5
2,285,422 + AO353_10430 0.83 -1.1
2,285,423 - AO353_10430 0.83 -2.0
2,285,423 - AO353_10430 0.83 +0.3
2,285,423 - AO353_10430 0.83 -1.1
2,285,423 - AO353_10430 0.83 -0.2
2,285,423 - AO353_10430 0.83 -1.8
2,285,578 + +1.6
2,285,578 + +1.2
2,285,578 + -1.4
2,285,578 + -0.6
2,285,578 + -0.7
2,285,578 + +0.5
2,285,579 - +1.9
2,285,650 + +0.4
2,285,651 - -0.4
2,285,680 + AO353_10435 0.13 +0.5
2,285,680 + AO353_10435 0.13 -0.2
2,285,680 + AO353_10435 0.13 -0.5
2,285,701 + AO353_10435 0.16 +0.6
2,285,701 + AO353_10435 0.16 -1.2
2,285,701 + AO353_10435 0.16 +2.3
2,285,749 + AO353_10435 0.22 +2.8
2,285,749 + AO353_10435 0.22 -0.7
2,285,750 - AO353_10435 0.22 +0.4
2,285,750 - AO353_10435 0.22 -1.1
2,285,750 - AO353_10435 0.22 -0.9
2,285,818 + AO353_10435 0.30 +0.1
2,285,818 + AO353_10435 0.30 -1.2
2,285,818 + AO353_10435 0.30 +1.5
2,285,818 + AO353_10435 0.30 +0.5
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 -0.8
2,285,818 + AO353_10435 0.30 +0.6
2,285,818 + AO353_10435 0.30 -1.4
2,285,818 + AO353_10435 0.30 -1.3
2,285,818 + AO353_10435 0.30 -0.2
2,285,818 + AO353_10435 0.30 -0.0
2,285,818 + AO353_10435 0.30 -1.2
2,285,818 + AO353_10435 0.30 +4.3
2,285,818 + AO353_10435 0.30 -1.4
2,285,818 + AO353_10435 0.30 -0.4
2,285,818 + AO353_10435 0.30 -0.4
2,285,818 + AO353_10435 0.30 -0.4
2,285,818 + AO353_10435 0.30 +0.8
2,285,818 + AO353_10435 0.30 +0.9
2,285,818 + AO353_10435 0.30 -0.0
2,285,818 + AO353_10435 0.30 -0.4
2,285,818 + AO353_10435 0.30 -1.5
2,285,819 - AO353_10435 0.30 +0.6
2,285,819 - AO353_10435 0.30 -0.4
2,285,819 - AO353_10435 0.30 -1.1
2,285,819 - AO353_10435 0.30 -3.1
2,285,819 - AO353_10435 0.30 -1.6
2,285,819 - AO353_10435 0.30 -2.4
2,285,819 - AO353_10435 0.30 -0.7
2,285,819 - AO353_10435 0.30 -1.1
2,285,819 - AO353_10435 0.30 -1.1
2,285,819 - AO353_10435 0.30 -1.8
2,285,819 - AO353_10435 0.30 -0.8
2,285,819 - AO353_10435 0.30 +0.5
2,285,819 - AO353_10435 0.30 -1.7
2,285,819 - AO353_10435 0.30 -0.4
2,285,819 - AO353_10435 0.30 -0.0
2,285,920 + AO353_10435 0.43 +0.3
2,285,921 - AO353_10435 0.43 +0.6
2,285,939 + AO353_10435 0.45 -1.3
2,285,939 + AO353_10435 0.45 -1.4
2,285,940 - AO353_10435 0.45 -1.7
2,285,944 - AO353_10435 0.46 -0.9
2,286,013 + AO353_10435 0.55 -0.3
2,286,013 + AO353_10435 0.55 +0.3
2,286,014 - AO353_10435 0.55 +1.2
2,286,019 + AO353_10435 0.55 -0.1
2,286,019 + AO353_10435 0.55 +0.4
2,286,019 + AO353_10435 0.55 -0.4
2,286,019 + AO353_10435 0.55 -1.2
2,286,019 + AO353_10435 0.55 -0.1
2,286,019 + AO353_10435 0.55 -1.2
2,286,019 + AO353_10435 0.55 +0.6
2,286,019 + AO353_10435 0.55 -0.3
2,286,019 + AO353_10435 0.55 -0.5
2,286,020 - AO353_10435 0.56 +0.1
2,286,020 - AO353_10435 0.56 -0.4
2,286,020 - AO353_10435 0.56 -0.4
2,286,193 + AO353_10435 0.77 +2.0
2,286,193 + AO353_10435 0.77 +0.6
2,286,194 - AO353_10435 0.77 +1.2
2,286,363 + +1.2
2,286,363 + -0.2
2,286,363 + -0.7
2,286,363 + +2.2
2,286,364 - -1.1
2,286,364 - -0.1
2,286,364 - -0.2
2,286,364 - -1.0
2,286,364 - -2.6
2,286,368 + +2.2
2,286,411 + +3.0
2,286,412 - -3.1

Or see this region's nucleotide sequence