Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09790 and AO353_09795 are separated by 64 nucleotides AO353_09795 and AO353_09800 are separated by 95 nucleotides AO353_09800 and AO353_09805 are separated by 3 nucleotides AO353_09805 and AO353_09810 are separated by 105 nucleotides AO353_09810 and AO353_09815 are separated by 75 nucleotides
AO353_09790: AO353_09790 - hypothetical protein, at 2,143,342 to 2,144,352
_09790
AO353_09795: AO353_09795 - hypothetical protein, at 2,144,417 to 2,144,635
_09795
AO353_09800: AO353_09800 - hypothetical protein, at 2,144,731 to 2,144,952
_09800
AO353_09805: AO353_09805 - hypothetical protein, at 2,144,956 to 2,145,243
_09805
AO353_09810: AO353_09810 - hypothetical protein, at 2,145,349 to 2,145,795
_09810
AO353_09815: AO353_09815 - hypothetical protein, at 2,145,871 to 2,146,305
_09815
Position (kb)
2144
2145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2143.864 kb on + strand, within AO353_09790 at 2143.901 kb on + strand, within AO353_09790 at 2144.021 kb on + strand, within AO353_09790 at 2144.021 kb on + strand, within AO353_09790 at 2144.035 kb on + strand, within AO353_09790 at 2144.035 kb on + strand, within AO353_09790 at 2144.057 kb on + strand, within AO353_09790 at 2144.124 kb on + strand, within AO353_09790 at 2144.129 kb on + strand, within AO353_09790 at 2144.285 kb on + strand at 2144.285 kb on + strand at 2144.306 kb on + strand at 2144.307 kb on - strand at 2144.329 kb on + strand at 2144.334 kb on + strand at 2144.342 kb on - strand at 2144.350 kb on + strand at 2144.350 kb on + strand at 2144.350 kb on + strand at 2144.350 kb on + strand at 2144.351 kb on - strand at 2144.351 kb on - strand at 2144.427 kb on + strand at 2144.427 kb on + strand at 2144.428 kb on - strand at 2144.428 kb on - strand at 2144.428 kb on - strand at 2144.428 kb on - strand at 2144.482 kb on + strand, within AO353_09795 at 2144.486 kb on + strand, within AO353_09795 at 2144.550 kb on - strand, within AO353_09795 at 2144.553 kb on + strand, within AO353_09795 at 2144.553 kb on + strand, within AO353_09795 at 2144.553 kb on + strand, within AO353_09795 at 2144.553 kb on + strand, within AO353_09795 at 2144.553 kb on + strand, within AO353_09795 at 2144.554 kb on - strand, within AO353_09795 at 2144.554 kb on - strand, within AO353_09795 at 2144.554 kb on - strand, within AO353_09795 at 2144.554 kb on - strand, within AO353_09795 at 2144.559 kb on + strand, within AO353_09795 at 2144.576 kb on + strand, within AO353_09795 at 2144.576 kb on + strand, within AO353_09795 at 2144.577 kb on - strand, within AO353_09795 at 2144.577 kb on - strand, within AO353_09795 at 2144.690 kb on + strand at 2144.833 kb on - strand, within AO353_09800 at 2144.892 kb on - strand, within AO353_09800 at 2145.241 kb on + strand at 2145.279 kb on - strand at 2145.469 kb on + strand, within AO353_09810 at 2145.584 kb on - strand, within AO353_09810 at 2145.612 kb on - strand, within AO353_09810 at 2145.612 kb on - strand, within AO353_09810 at 2145.612 kb on - strand, within AO353_09810 at 2145.612 kb on - strand, within AO353_09810 at 2145.646 kb on - strand, within AO353_09810 at 2145.648 kb on - strand, within AO353_09810 at 2145.678 kb on - strand, within AO353_09810 at 2145.678 kb on - strand, within AO353_09810 at 2145.679 kb on + strand, within AO353_09810 at 2145.679 kb on + strand, within AO353_09810 at 2145.680 kb on - strand, within AO353_09810 at 2145.699 kb on + strand, within AO353_09810 at 2145.700 kb on - strand, within AO353_09810 at 2145.803 kb on + strand at 2145.819 kb on + strand at 2145.848 kb on + strand at 2145.853 kb on + strand at 2145.853 kb on + strand at 2145.853 kb on + strand at 2145.897 kb on + strand at 2145.915 kb on - strand, within AO353_09815 at 2145.915 kb on - strand, within AO353_09815
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,143,864 + AO353_09790 0.52 +0.1 2,143,901 + AO353_09790 0.55 +0.0 2,144,021 + AO353_09790 0.67 -0.1 2,144,021 + AO353_09790 0.67 -1.0 2,144,035 + AO353_09790 0.69 -1.1 2,144,035 + AO353_09790 0.69 +1.8 2,144,057 + AO353_09790 0.71 -1.2 2,144,124 + AO353_09790 0.77 +0.9 2,144,129 + AO353_09790 0.78 +0.1 2,144,285 + +0.1 2,144,285 + +0.5 2,144,306 + +0.0 2,144,307 - -1.4 2,144,329 + -1.9 2,144,334 + +0.9 2,144,342 - +0.9 2,144,350 + +0.0 2,144,350 + -1.0 2,144,350 + +0.6 2,144,350 + +0.4 2,144,351 - -0.1 2,144,351 - -1.3 2,144,427 + +1.7 2,144,427 + -1.6 2,144,428 - -0.3 2,144,428 - -0.4 2,144,428 - +0.4 2,144,428 - -0.4 2,144,482 + AO353_09795 0.30 +1.5 2,144,486 + AO353_09795 0.32 +0.3 2,144,550 - AO353_09795 0.61 +1.6 2,144,553 + AO353_09795 0.62 +0.3 2,144,553 + AO353_09795 0.62 +0.7 2,144,553 + AO353_09795 0.62 +1.2 2,144,553 + AO353_09795 0.62 +0.6 2,144,553 + AO353_09795 0.62 -0.6 2,144,554 - AO353_09795 0.63 +0.6 2,144,554 - AO353_09795 0.63 +0.8 2,144,554 - AO353_09795 0.63 +0.4 2,144,554 - AO353_09795 0.63 -0.5 2,144,559 + AO353_09795 0.65 -1.7 2,144,576 + AO353_09795 0.73 +1.2 2,144,576 + AO353_09795 0.73 +0.2 2,144,577 - AO353_09795 0.73 +0.1 2,144,577 - AO353_09795 0.73 +1.0 2,144,690 + +0.2 2,144,833 - AO353_09800 0.46 +0.0 2,144,892 - AO353_09800 0.73 -0.3 2,145,241 + +0.2 2,145,279 - +0.4 2,145,469 + AO353_09810 0.27 +0.2 2,145,584 - AO353_09810 0.53 +0.0 2,145,612 - AO353_09810 0.59 -1.6 2,145,612 - AO353_09810 0.59 +0.7 2,145,612 - AO353_09810 0.59 -0.4 2,145,612 - AO353_09810 0.59 -0.4 2,145,646 - AO353_09810 0.66 +0.2 2,145,648 - AO353_09810 0.67 -2.7 2,145,678 - AO353_09810 0.74 +0.9 2,145,678 - AO353_09810 0.74 -0.2 2,145,679 + AO353_09810 0.74 +0.0 2,145,679 + AO353_09810 0.74 -1.0 2,145,680 - AO353_09810 0.74 -1.7 2,145,699 + AO353_09810 0.78 -0.2 2,145,700 - AO353_09810 0.79 +0.3 2,145,803 + +0.3 2,145,819 + -0.6 2,145,848 + -0.2 2,145,853 + +0.3 2,145,853 + +0.4 2,145,853 + +0.0 2,145,897 + -0.4 2,145,915 - AO353_09815 0.10 -1.4 2,145,915 - AO353_09815 0.10 -0.2
Or see this region's nucleotide sequence