Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09800

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09790 and AO353_09795 are separated by 64 nucleotidesAO353_09795 and AO353_09800 are separated by 95 nucleotidesAO353_09800 and AO353_09805 are separated by 3 nucleotidesAO353_09805 and AO353_09810 are separated by 105 nucleotidesAO353_09810 and AO353_09815 are separated by 75 nucleotides AO353_09790: AO353_09790 - hypothetical protein, at 2,143,342 to 2,144,352 _09790 AO353_09795: AO353_09795 - hypothetical protein, at 2,144,417 to 2,144,635 _09795 AO353_09800: AO353_09800 - hypothetical protein, at 2,144,731 to 2,144,952 _09800 AO353_09805: AO353_09805 - hypothetical protein, at 2,144,956 to 2,145,243 _09805 AO353_09810: AO353_09810 - hypothetical protein, at 2,145,349 to 2,145,795 _09810 AO353_09815: AO353_09815 - hypothetical protein, at 2,145,871 to 2,146,305 _09815 Position (kb) 2144 2145Strain fitness (log2 ratio) -2 -1 0 1 2at 2143.864 kb on + strand, within AO353_09790at 2143.901 kb on + strand, within AO353_09790at 2144.021 kb on + strand, within AO353_09790at 2144.021 kb on + strand, within AO353_09790at 2144.035 kb on + strand, within AO353_09790at 2144.035 kb on + strand, within AO353_09790at 2144.057 kb on + strand, within AO353_09790at 2144.124 kb on + strand, within AO353_09790at 2144.129 kb on + strand, within AO353_09790at 2144.285 kb on + strandat 2144.285 kb on + strandat 2144.306 kb on + strandat 2144.307 kb on - strandat 2144.329 kb on + strandat 2144.334 kb on + strandat 2144.342 kb on - strandat 2144.350 kb on + strandat 2144.350 kb on + strandat 2144.350 kb on + strandat 2144.350 kb on + strandat 2144.351 kb on - strandat 2144.351 kb on - strandat 2144.427 kb on + strandat 2144.427 kb on + strandat 2144.428 kb on - strandat 2144.428 kb on - strandat 2144.428 kb on - strandat 2144.428 kb on - strandat 2144.482 kb on + strand, within AO353_09795at 2144.486 kb on + strand, within AO353_09795at 2144.550 kb on - strand, within AO353_09795at 2144.553 kb on + strand, within AO353_09795at 2144.553 kb on + strand, within AO353_09795at 2144.553 kb on + strand, within AO353_09795at 2144.553 kb on + strand, within AO353_09795at 2144.553 kb on + strand, within AO353_09795at 2144.554 kb on - strand, within AO353_09795at 2144.554 kb on - strand, within AO353_09795at 2144.554 kb on - strand, within AO353_09795at 2144.554 kb on - strand, within AO353_09795at 2144.559 kb on + strand, within AO353_09795at 2144.576 kb on + strand, within AO353_09795at 2144.576 kb on + strand, within AO353_09795at 2144.577 kb on - strand, within AO353_09795at 2144.577 kb on - strand, within AO353_09795at 2144.690 kb on + strandat 2144.833 kb on - strand, within AO353_09800at 2144.892 kb on - strand, within AO353_09800at 2145.241 kb on + strandat 2145.279 kb on - strandat 2145.469 kb on + strand, within AO353_09810at 2145.584 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.612 kb on - strand, within AO353_09810at 2145.646 kb on - strand, within AO353_09810at 2145.648 kb on - strand, within AO353_09810at 2145.678 kb on - strand, within AO353_09810at 2145.678 kb on - strand, within AO353_09810at 2145.679 kb on + strand, within AO353_09810at 2145.679 kb on + strand, within AO353_09810at 2145.680 kb on - strand, within AO353_09810at 2145.699 kb on + strand, within AO353_09810at 2145.700 kb on - strand, within AO353_09810at 2145.803 kb on + strandat 2145.819 kb on + strandat 2145.848 kb on + strandat 2145.853 kb on + strandat 2145.853 kb on + strandat 2145.853 kb on + strandat 2145.897 kb on + strandat 2145.915 kb on - strand, within AO353_09815at 2145.915 kb on - strand, within AO353_09815

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,143,864 + AO353_09790 0.52 +0.1
2,143,901 + AO353_09790 0.55 +0.0
2,144,021 + AO353_09790 0.67 -0.1
2,144,021 + AO353_09790 0.67 -1.0
2,144,035 + AO353_09790 0.69 -1.1
2,144,035 + AO353_09790 0.69 +1.8
2,144,057 + AO353_09790 0.71 -1.2
2,144,124 + AO353_09790 0.77 +0.9
2,144,129 + AO353_09790 0.78 +0.1
2,144,285 + +0.1
2,144,285 + +0.5
2,144,306 + +0.0
2,144,307 - -1.4
2,144,329 + -1.9
2,144,334 + +0.9
2,144,342 - +0.9
2,144,350 + +0.0
2,144,350 + -1.0
2,144,350 + +0.6
2,144,350 + +0.4
2,144,351 - -0.1
2,144,351 - -1.3
2,144,427 + +1.7
2,144,427 + -1.6
2,144,428 - -0.3
2,144,428 - -0.4
2,144,428 - +0.4
2,144,428 - -0.4
2,144,482 + AO353_09795 0.30 +1.5
2,144,486 + AO353_09795 0.32 +0.3
2,144,550 - AO353_09795 0.61 +1.6
2,144,553 + AO353_09795 0.62 +0.3
2,144,553 + AO353_09795 0.62 +0.7
2,144,553 + AO353_09795 0.62 +1.2
2,144,553 + AO353_09795 0.62 +0.6
2,144,553 + AO353_09795 0.62 -0.6
2,144,554 - AO353_09795 0.63 +0.6
2,144,554 - AO353_09795 0.63 +0.8
2,144,554 - AO353_09795 0.63 +0.4
2,144,554 - AO353_09795 0.63 -0.5
2,144,559 + AO353_09795 0.65 -1.7
2,144,576 + AO353_09795 0.73 +1.2
2,144,576 + AO353_09795 0.73 +0.2
2,144,577 - AO353_09795 0.73 +0.1
2,144,577 - AO353_09795 0.73 +1.0
2,144,690 + +0.2
2,144,833 - AO353_09800 0.46 +0.0
2,144,892 - AO353_09800 0.73 -0.3
2,145,241 + +0.2
2,145,279 - +0.4
2,145,469 + AO353_09810 0.27 +0.2
2,145,584 - AO353_09810 0.53 +0.0
2,145,612 - AO353_09810 0.59 -1.6
2,145,612 - AO353_09810 0.59 +0.7
2,145,612 - AO353_09810 0.59 -0.4
2,145,612 - AO353_09810 0.59 -0.4
2,145,646 - AO353_09810 0.66 +0.2
2,145,648 - AO353_09810 0.67 -2.7
2,145,678 - AO353_09810 0.74 +0.9
2,145,678 - AO353_09810 0.74 -0.2
2,145,679 + AO353_09810 0.74 +0.0
2,145,679 + AO353_09810 0.74 -1.0
2,145,680 - AO353_09810 0.74 -1.7
2,145,699 + AO353_09810 0.78 -0.2
2,145,700 - AO353_09810 0.79 +0.3
2,145,803 + +0.3
2,145,819 + -0.6
2,145,848 + -0.2
2,145,853 + +0.3
2,145,853 + +0.4
2,145,853 + +0.0
2,145,897 + -0.4
2,145,915 - AO353_09815 0.10 -1.4
2,145,915 - AO353_09815 0.10 -0.2

Or see this region's nucleotide sequence