Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02245 and AO353_02250 are separated by 34 nucleotides AO353_02250 and AO353_02255 are separated by 140 nucleotides
AO353_02245: AO353_02245 - MFS transporter, at 479,792 to 480,937
_02245
AO353_02250: AO353_02250 - chorismate synthase, at 480,972 to 482,063
_02250
AO353_02255: AO353_02255 - alpha/beta hydrolase, at 482,204 to 483,172
_02255
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.989 kb on + strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245 at 480.108 kb on - strand, within AO353_02245 at 480.223 kb on + strand, within AO353_02245 at 480.243 kb on + strand, within AO353_02245 at 480.279 kb on + strand, within AO353_02245 at 480.279 kb on + strand, within AO353_02245 at 480.280 kb on - strand, within AO353_02245 at 480.280 kb on - strand, within AO353_02245 at 480.280 kb on - strand, within AO353_02245 at 480.282 kb on + strand, within AO353_02245 at 480.283 kb on - strand, within AO353_02245 at 480.283 kb on - strand, within AO353_02245 at 480.321 kb on + strand, within AO353_02245 at 480.321 kb on + strand, within AO353_02245 at 480.321 kb on + strand, within AO353_02245 at 480.321 kb on + strand, within AO353_02245 at 480.322 kb on - strand, within AO353_02245 at 480.322 kb on - strand, within AO353_02245 at 480.428 kb on + strand, within AO353_02245 at 480.429 kb on - strand, within AO353_02245 at 480.462 kb on + strand, within AO353_02245 at 480.553 kb on - strand, within AO353_02245 at 480.660 kb on + strand, within AO353_02245 at 480.660 kb on + strand, within AO353_02245 at 480.661 kb on - strand, within AO353_02245 at 480.661 kb on - strand, within AO353_02245 at 480.700 kb on + strand, within AO353_02245 at 480.700 kb on + strand, within AO353_02245 at 480.700 kb on + strand, within AO353_02245 at 480.701 kb on - strand at 480.701 kb on - strand, within AO353_02245 at 480.744 kb on + strand, within AO353_02245 at 480.744 kb on + strand, within AO353_02245 at 480.744 kb on + strand, within AO353_02245 at 480.745 kb on - strand, within AO353_02245 at 480.766 kb on + strand, within AO353_02245 at 480.891 kb on + strand at 480.891 kb on + strand at 480.891 kb on + strand at 480.892 kb on - strand at 480.900 kb on + strand at 480.900 kb on + strand at 480.900 kb on + strand at 480.900 kb on + strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 480.901 kb on - strand at 481.493 kb on - strand, within AO353_02250 at 481.493 kb on - strand, within AO353_02250 at 481.720 kb on + strand, within AO353_02250 at 481.733 kb on - strand, within AO353_02250 at 481.738 kb on + strand, within AO353_02250 at 482.051 kb on + strand at 482.109 kb on - strand at 482.109 kb on - strand at 482.122 kb on - strand at 482.122 kb on - strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.123 kb on + strand at 482.124 kb on - strand at 482.124 kb on - strand at 482.124 kb on - strand at 482.140 kb on + strand at 482.140 kb on + strand at 482.140 kb on + strand at 482.140 kb on + strand at 482.141 kb on - strand at 482.141 kb on - strand at 482.141 kb on - strand at 482.141 kb on - strand at 482.141 kb on - strand at 482.218 kb on + strand at 482.218 kb on + strand at 482.219 kb on - strand at 482.219 kb on - strand at 482.219 kb on - strand at 482.243 kb on - strand at 482.243 kb on - strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.281 kb on - strand at 482.281 kb on - strand at 482.414 kb on - strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.612 kb on - strand, within AO353_02255 at 482.725 kb on - strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 479,989 + AO353_02245 0.17 -0.6 479,990 - AO353_02245 0.17 -0.0 479,990 - AO353_02245 0.17 -0.3 479,990 - AO353_02245 0.17 -2.8 480,108 - AO353_02245 0.28 -0.4 480,223 + AO353_02245 0.38 -0.2 480,243 + AO353_02245 0.39 -0.5 480,279 + AO353_02245 0.42 -1.7 480,279 + AO353_02245 0.42 -1.4 480,280 - AO353_02245 0.43 +0.1 480,280 - AO353_02245 0.43 -0.2 480,280 - AO353_02245 0.43 -1.7 480,282 + AO353_02245 0.43 -0.0 480,283 - AO353_02245 0.43 -0.8 480,283 - AO353_02245 0.43 +0.4 480,321 + AO353_02245 0.46 +0.1 480,321 + AO353_02245 0.46 -2.2 480,321 + AO353_02245 0.46 +0.9 480,321 + AO353_02245 0.46 -0.4 480,322 - AO353_02245 0.46 +0.2 480,322 - AO353_02245 0.46 -0.7 480,428 + AO353_02245 0.55 +0.6 480,429 - AO353_02245 0.56 +1.7 480,462 + AO353_02245 0.58 -0.4 480,553 - AO353_02245 0.66 -0.0 480,660 + AO353_02245 0.76 -0.8 480,660 + AO353_02245 0.76 +0.6 480,661 - AO353_02245 0.76 +0.7 480,661 - AO353_02245 0.76 +1.0 480,700 + AO353_02245 0.79 -0.4 480,700 + AO353_02245 0.79 -0.6 480,700 + AO353_02245 0.79 -0.1 480,701 - -0.8 480,701 - AO353_02245 0.79 -0.7 480,744 + AO353_02245 0.83 -0.2 480,744 + AO353_02245 0.83 -0.3 480,744 + AO353_02245 0.83 +1.4 480,745 - AO353_02245 0.83 +0.6 480,766 + AO353_02245 0.85 -2.1 480,891 + -0.8 480,891 + +0.5 480,891 + +2.0 480,892 - -0.6 480,900 + +0.2 480,900 + -0.7 480,900 + +0.2 480,900 + +0.6 480,901 - -0.9 480,901 - -0.3 480,901 - +0.9 480,901 - -1.0 480,901 - +0.3 480,901 - -1.4 480,901 - -1.1 480,901 - -1.1 480,901 - +0.7 481,493 - AO353_02250 0.48 -1.3 481,493 - AO353_02250 0.48 -2.6 481,720 + AO353_02250 0.68 -0.2 481,733 - AO353_02250 0.70 -0.6 481,738 + AO353_02250 0.70 -1.5 482,051 + -0.8 482,109 - -0.1 482,109 - +0.5 482,122 - +0.2 482,122 - +0.6 482,123 + +0.1 482,123 + +0.3 482,123 + -0.4 482,123 + -0.1 482,123 + +0.1 482,123 + -0.7 482,123 + +1.6 482,123 + -1.4 482,123 + -1.8 482,123 + -0.3 482,124 - +0.2 482,124 - -0.0 482,124 - -0.3 482,140 + -1.2 482,140 + -2.6 482,140 + -1.5 482,140 + -2.4 482,141 - +1.4 482,141 - +0.5 482,141 - -0.6 482,141 - -0.4 482,141 - -0.3 482,218 + +0.0 482,218 + +0.6 482,219 - -0.3 482,219 - -0.2 482,219 - -1.7 482,243 - +1.9 482,243 - -1.0 482,280 + -1.1 482,280 + -1.0 482,280 + -1.6 482,280 + -2.3 482,280 + -1.4 482,280 + +0.1 482,280 + -1.5 482,281 - +1.0 482,281 - -0.1 482,414 - AO353_02255 0.22 +1.2 482,561 + AO353_02255 0.37 -1.0 482,561 + AO353_02255 0.37 -0.2 482,561 + AO353_02255 0.37 -0.9 482,561 + AO353_02255 0.37 -0.6 482,561 + AO353_02255 0.37 -0.0 482,561 + AO353_02255 0.37 -0.5 482,562 - AO353_02255 0.37 -0.2 482,562 - AO353_02255 0.37 +0.3 482,562 - AO353_02255 0.37 -0.3 482,612 - AO353_02255 0.42 +0.3 482,725 - AO353_02255 0.54 -0.3 482,876 + AO353_02255 0.69 +0.4 482,876 + AO353_02255 0.69 +1.2 482,876 + AO353_02255 0.69 +0.6 482,876 + AO353_02255 0.69 +0.6 482,876 + AO353_02255 0.69 +0.2 482,876 + AO353_02255 0.69 -1.7 482,876 + AO353_02255 0.69 -1.0 482,876 + AO353_02255 0.69 -0.8 482,876 + AO353_02255 0.69 +0.9 482,876 + AO353_02255 0.69 +0.7 482,877 - AO353_02255 0.69 +1.7 482,877 - AO353_02255 0.69 -0.0 482,877 - AO353_02255 0.69 +0.5 482,877 - AO353_02255 0.69 -1.0 482,877 - AO353_02255 0.69 +2.2
Or see this region's nucleotide sequence