Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01165 and AO353_01170 are separated by 66 nucleotides AO353_01170 and AO353_01175 overlap by 4 nucleotides AO353_01175 and AO353_01180 are separated by 12 nucleotides
AO353_01165: AO353_01165 - cytochrome C, at 258,430 to 259,284
_01165
AO353_01170: AO353_01170 - transglutaminase, at 259,351 to 260,154
_01170
AO353_01175: AO353_01175 - hypothetical protein, at 260,151 to 261,101
_01175
AO353_01180: AO353_01180 - hypothetical protein, at 261,114 to 262,523
_01180
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 259.211 kb on + strand at 259.211 kb on + strand at 259.211 kb on + strand at 259.211 kb on + strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.212 kb on - strand at 259.246 kb on + strand at 259.247 kb on - strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.257 kb on + strand at 259.258 kb on - strand at 259.269 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.352 kb on + strand at 259.353 kb on - strand at 259.460 kb on + strand, within AO353_01170 at 259.460 kb on + strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.461 kb on - strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.471 kb on + strand, within AO353_01170 at 259.472 kb on - strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.529 kb on + strand, within AO353_01170 at 259.530 kb on - strand, within AO353_01170 at 259.530 kb on - strand, within AO353_01170 at 259.595 kb on + strand at 259.595 kb on + strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.596 kb on - strand, within AO353_01170 at 259.601 kb on + strand, within AO353_01170 at 259.601 kb on + strand, within AO353_01170 at 259.602 kb on - strand, within AO353_01170 at 259.602 kb on - strand, within AO353_01170 at 259.613 kb on + strand, within AO353_01170 at 259.613 kb on + strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.614 kb on - strand, within AO353_01170 at 259.635 kb on + strand, within AO353_01170 at 259.641 kb on + strand, within AO353_01170 at 259.642 kb on - strand, within AO353_01170 at 259.739 kb on + strand, within AO353_01170 at 259.739 kb on + strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 259.740 kb on - strand, within AO353_01170 at 260.047 kb on + strand, within AO353_01170 at 260.047 kb on + strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.048 kb on - strand, within AO353_01170 at 260.087 kb on + strand at 260.087 kb on + strand at 260.088 kb on - strand at 260.088 kb on - strand at 260.117 kb on + strand at 260.117 kb on + strand at 260.118 kb on - strand at 260.118 kb on - strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.123 kb on + strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.124 kb on - strand at 260.167 kb on + strand at 260.168 kb on - strand at 260.168 kb on - strand at 260.168 kb on - strand at 260.178 kb on + strand at 260.179 kb on - strand at 260.179 kb on - strand at 260.179 kb on - strand at 260.179 kb on - strand at 260.382 kb on + strand, within AO353_01175 at 260.383 kb on - strand, within AO353_01175 at 260.394 kb on + strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.395 kb on - strand, within AO353_01175 at 260.441 kb on - strand, within AO353_01175 at 260.452 kb on + strand, within AO353_01175 at 260.452 kb on + strand, within AO353_01175 at 260.452 kb on + strand, within AO353_01175 at 260.453 kb on - strand, within AO353_01175 at 260.453 kb on - strand, within AO353_01175 at 260.453 kb on - strand, within AO353_01175 at 260.453 kb on - strand, within AO353_01175 at 260.453 kb on - strand, within AO353_01175 at 260.497 kb on + strand, within AO353_01175 at 260.500 kb on + strand, within AO353_01175 at 260.500 kb on + strand, within AO353_01175 at 260.500 kb on + strand, within AO353_01175 at 260.500 kb on + strand, within AO353_01175 at 260.500 kb on + strand, within AO353_01175 at 260.501 kb on - strand, within AO353_01175 at 260.501 kb on - strand, within AO353_01175 at 260.501 kb on - strand, within AO353_01175 at 260.506 kb on + strand, within AO353_01175 at 260.507 kb on - strand, within AO353_01175 at 260.790 kb on - strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.842 kb on + strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.843 kb on - strand, within AO353_01175 at 260.846 kb on + strand, within AO353_01175 at 260.846 kb on + strand, within AO353_01175 at 260.923 kb on + strand, within AO353_01175 at 260.924 kb on - strand, within AO353_01175 at 260.924 kb on - strand, within AO353_01175 at 261.013 kb on + strand at 261.014 kb on - strand at 261.014 kb on - strand at 261.014 kb on - strand at 261.073 kb on + strand at 261.073 kb on + strand at 261.073 kb on + strand at 261.073 kb on + strand at 261.074 kb on - strand at 261.092 kb on + strand at 261.093 kb on - strand at 261.093 kb on - strand at 261.093 kb on - strand at 261.093 kb on - strand at 261.096 kb on + strand at 261.096 kb on + strand at 261.096 kb on + strand at 261.096 kb on + strand at 261.096 kb on + strand at 261.096 kb on + strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.097 kb on - strand at 261.192 kb on + strand at 261.192 kb on + strand at 261.329 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.331 kb on + strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.332 kb on - strand, within AO353_01180 at 261.718 kb on + strand, within AO353_01180 at 261.718 kb on + strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 261.719 kb on - strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.018 kb on + strand, within AO353_01180 at 262.019 kb on - strand, within AO353_01180 at 262.019 kb on - strand, within AO353_01180 at 262.019 kb on - strand, within AO353_01180 at 262.019 kb on - strand, within AO353_01180 at 262.060 kb on + strand, within AO353_01180 at 262.060 kb on + strand, within AO353_01180 at 262.060 kb on + strand, within AO353_01180 at 262.060 kb on + strand, within AO353_01180 at 262.060 kb on + strand, within AO353_01180 at 262.061 kb on - strand, within AO353_01180 at 262.061 kb on - strand, within AO353_01180 at 262.061 kb on - strand, within AO353_01180 at 262.061 kb on - strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.063 kb on + strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180 at 262.064 kb on - strand, within AO353_01180
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 259,211 + +2.8 259,211 + +3.1 259,211 + -1.5 259,211 + +0.5 259,212 - +0.3 259,212 - +0.5 259,212 - +0.3 259,212 - +0.1 259,246 + -0.4 259,247 - -1.5 259,257 + -0.4 259,257 + -0.9 259,257 + -0.3 259,257 + -1.7 259,257 + +0.5 259,257 + +0.3 259,257 + +0.6 259,258 - -0.5 259,269 + -0.1 259,352 + +0.5 259,352 + -0.8 259,352 + +0.7 259,352 + -1.0 259,352 + -1.2 259,353 - -1.7 259,460 + AO353_01170 0.14 +0.9 259,460 + AO353_01170 0.14 +0.3 259,461 - AO353_01170 0.14 -0.7 259,461 - AO353_01170 0.14 +0.1 259,461 - AO353_01170 0.14 +0.3 259,471 + AO353_01170 0.15 -0.1 259,471 + AO353_01170 0.15 -1.2 259,471 + AO353_01170 0.15 -0.5 259,471 + AO353_01170 0.15 -1.3 259,472 - AO353_01170 0.15 +0.4 259,529 + AO353_01170 0.22 +0.5 259,529 + AO353_01170 0.22 +0.4 259,529 + AO353_01170 0.22 -1.1 259,530 - AO353_01170 0.22 +0.7 259,530 - AO353_01170 0.22 -0.6 259,595 + +1.1 259,595 + AO353_01170 0.30 -0.0 259,596 - AO353_01170 0.30 -0.5 259,596 - AO353_01170 0.30 +2.9 259,596 - AO353_01170 0.30 +0.7 259,601 + AO353_01170 0.31 +0.3 259,601 + AO353_01170 0.31 +0.5 259,602 - AO353_01170 0.31 +0.3 259,602 - AO353_01170 0.31 -0.3 259,613 + AO353_01170 0.33 +0.7 259,613 + AO353_01170 0.33 +1.3 259,614 - AO353_01170 0.33 +1.7 259,614 - AO353_01170 0.33 +0.6 259,614 - AO353_01170 0.33 +0.5 259,614 - AO353_01170 0.33 -0.8 259,635 + AO353_01170 0.35 +0.8 259,641 + AO353_01170 0.36 +0.2 259,642 - AO353_01170 0.36 +0.3 259,739 + AO353_01170 0.48 +0.5 259,739 + AO353_01170 0.48 +0.8 259,740 - AO353_01170 0.48 +1.3 259,740 - AO353_01170 0.48 +0.3 259,740 - AO353_01170 0.48 -0.4 259,740 - AO353_01170 0.48 +0.1 259,740 - AO353_01170 0.48 +0.3 260,047 + AO353_01170 0.87 +0.2 260,047 + AO353_01170 0.87 +1.7 260,048 - AO353_01170 0.87 +0.0 260,048 - AO353_01170 0.87 -0.1 260,048 - AO353_01170 0.87 -0.5 260,048 - AO353_01170 0.87 -0.6 260,087 + +0.6 260,087 + -1.0 260,088 - -0.2 260,088 - +1.1 260,117 + -0.0 260,117 + +1.2 260,118 - -0.3 260,118 - +1.4 260,123 + -0.7 260,123 + -0.0 260,123 + +0.8 260,123 + +0.1 260,123 + -0.3 260,123 + +0.4 260,123 + +1.2 260,123 + +0.7 260,124 - +0.5 260,124 - -1.2 260,124 - +0.2 260,124 - -0.1 260,124 - -1.3 260,124 - -0.3 260,124 - -0.2 260,124 - +0.6 260,124 - +0.3 260,124 - -1.0 260,124 - -0.1 260,167 + -1.3 260,168 - +0.5 260,168 - +1.1 260,168 - +0.7 260,178 + -1.0 260,179 - +0.8 260,179 - -1.6 260,179 - +2.4 260,179 - +0.5 260,382 + AO353_01175 0.24 -1.4 260,383 - AO353_01175 0.24 +0.3 260,394 + AO353_01175 0.26 +0.2 260,395 - AO353_01175 0.26 +0.8 260,395 - AO353_01175 0.26 -0.4 260,395 - AO353_01175 0.26 +1.1 260,395 - AO353_01175 0.26 -0.6 260,395 - AO353_01175 0.26 +0.4 260,395 - AO353_01175 0.26 -1.3 260,441 - AO353_01175 0.30 +0.6 260,452 + AO353_01175 0.32 -0.3 260,452 + AO353_01175 0.32 +2.3 260,452 + AO353_01175 0.32 -0.7 260,453 - AO353_01175 0.32 +0.0 260,453 - AO353_01175 0.32 +0.1 260,453 - AO353_01175 0.32 +0.4 260,453 - AO353_01175 0.32 -0.4 260,453 - AO353_01175 0.32 -0.4 260,497 + AO353_01175 0.36 -1.8 260,500 + AO353_01175 0.37 +0.1 260,500 + AO353_01175 0.37 +0.9 260,500 + AO353_01175 0.37 -1.4 260,500 + AO353_01175 0.37 -0.5 260,500 + AO353_01175 0.37 -0.3 260,501 - AO353_01175 0.37 -0.8 260,501 - AO353_01175 0.37 +0.1 260,501 - AO353_01175 0.37 +2.1 260,506 + AO353_01175 0.37 +0.8 260,507 - AO353_01175 0.37 -0.8 260,790 - AO353_01175 0.67 -1.0 260,842 + AO353_01175 0.73 +1.0 260,842 + AO353_01175 0.73 -0.0 260,842 + AO353_01175 0.73 +1.1 260,842 + AO353_01175 0.73 -0.0 260,842 + AO353_01175 0.73 +1.3 260,842 + AO353_01175 0.73 +0.5 260,842 + AO353_01175 0.73 -0.6 260,843 - AO353_01175 0.73 +1.2 260,843 - AO353_01175 0.73 -2.1 260,843 - AO353_01175 0.73 -0.4 260,843 - AO353_01175 0.73 -0.2 260,843 - AO353_01175 0.73 +1.0 260,843 - AO353_01175 0.73 +0.2 260,843 - AO353_01175 0.73 -0.2 260,843 - AO353_01175 0.73 -0.9 260,843 - AO353_01175 0.73 +1.1 260,843 - AO353_01175 0.73 -0.1 260,843 - AO353_01175 0.73 -0.5 260,843 - AO353_01175 0.73 +0.6 260,843 - AO353_01175 0.73 -1.0 260,843 - AO353_01175 0.73 +0.6 260,843 - AO353_01175 0.73 +1.4 260,843 - AO353_01175 0.73 +0.2 260,843 - AO353_01175 0.73 +1.1 260,843 - AO353_01175 0.73 +0.0 260,846 + AO353_01175 0.73 +0.4 260,846 + AO353_01175 0.73 -0.7 260,923 + AO353_01175 0.81 +0.8 260,924 - AO353_01175 0.81 +3.7 260,924 - AO353_01175 0.81 +0.9 261,013 + +0.1 261,014 - +0.4 261,014 - +0.3 261,014 - -1.6 261,073 + +2.4 261,073 + +1.3 261,073 + +0.9 261,073 + -0.5 261,074 - +0.4 261,092 + -0.4 261,093 - +0.1 261,093 - +0.2 261,093 - -1.1 261,093 - -0.5 261,096 + +1.7 261,096 + +0.7 261,096 + -0.4 261,096 + +0.8 261,096 + +1.2 261,096 + -0.4 261,097 - -0.8 261,097 - -1.1 261,097 - +1.1 261,097 - +0.5 261,097 - +0.3 261,097 - -0.6 261,097 - +0.4 261,097 - +0.3 261,097 - +0.2 261,192 + -0.0 261,192 + +0.1 261,329 + AO353_01180 0.15 -0.7 261,331 + AO353_01180 0.15 +0.3 261,331 + AO353_01180 0.15 -1.4 261,331 + AO353_01180 0.15 -0.3 261,331 + AO353_01180 0.15 +0.1 261,331 + AO353_01180 0.15 -1.9 261,331 + AO353_01180 0.15 -0.8 261,332 - AO353_01180 0.15 -1.7 261,332 - AO353_01180 0.15 +1.2 261,332 - AO353_01180 0.15 +1.1 261,332 - AO353_01180 0.15 -0.7 261,332 - AO353_01180 0.15 +0.4 261,332 - AO353_01180 0.15 +0.3 261,332 - AO353_01180 0.15 +1.4 261,332 - AO353_01180 0.15 +0.8 261,332 - AO353_01180 0.15 -1.9 261,718 + AO353_01180 0.43 +0.8 261,718 + AO353_01180 0.43 -1.2 261,719 - AO353_01180 0.43 +0.3 261,719 - AO353_01180 0.43 -0.8 261,719 - AO353_01180 0.43 +1.1 261,719 - AO353_01180 0.43 -0.1 261,719 - AO353_01180 0.43 -2.8 261,719 - AO353_01180 0.43 +0.1 262,018 + AO353_01180 0.64 -0.4 262,018 + AO353_01180 0.64 +0.5 262,018 + AO353_01180 0.64 -0.3 262,018 + AO353_01180 0.64 -0.2 262,018 + AO353_01180 0.64 -0.3 262,018 + AO353_01180 0.64 +0.3 262,019 - AO353_01180 0.64 -0.3 262,019 - AO353_01180 0.64 -0.9 262,019 - AO353_01180 0.64 +2.1 262,019 - AO353_01180 0.64 +0.5 262,060 + AO353_01180 0.67 +1.1 262,060 + AO353_01180 0.67 -1.0 262,060 + AO353_01180 0.67 +0.7 262,060 + AO353_01180 0.67 +1.0 262,060 + AO353_01180 0.67 +0.4 262,061 - AO353_01180 0.67 +0.4 262,061 - AO353_01180 0.67 +0.8 262,061 - AO353_01180 0.67 +1.2 262,061 - AO353_01180 0.67 +0.6 262,063 + AO353_01180 0.67 +0.2 262,063 + AO353_01180 0.67 +1.2 262,063 + AO353_01180 0.67 +1.1 262,063 + AO353_01180 0.67 +1.3 262,063 + AO353_01180 0.67 -0.3 262,063 + AO353_01180 0.67 -1.0 262,063 + AO353_01180 0.67 +0.1 262,064 - AO353_01180 0.67 -0.5 262,064 - AO353_01180 0.67 -0.8 262,064 - AO353_01180 0.67 -0.0 262,064 - AO353_01180 0.67 -1.5 262,064 - AO353_01180 0.67 +0.2 262,064 - AO353_01180 0.67 -0.8 262,064 - AO353_01180 0.67 +1.1 262,064 - AO353_01180 0.67 -0.3 262,064 - AO353_01180 0.67 +0.2
Or see this region's nucleotide sequence