Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00895

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00890 and AO353_00895 are separated by 200 nucleotidesAO353_00895 and AO353_00900 are separated by 67 nucleotidesAO353_00900 and AO353_00905 overlap by 4 nucleotides AO353_00890: AO353_00890 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 201,359 to 203,953 _00890 AO353_00895: AO353_00895 - 2-methylcitrate synthase, at 204,154 to 205,281 _00895 AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242 _00900 AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961 _00905 Position (kb) 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 203.848 kb on - strandat 203.863 kb on - strandat 203.977 kb on + strandat 203.978 kb on - strandat 204.021 kb on + strandat 204.021 kb on + strandat 204.022 kb on - strandat 204.107 kb on + strandat 204.107 kb on + strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.200 kb on + strandat 204.200 kb on + strandat 204.201 kb on - strandat 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.731 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.876 kb on - strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.172 kb on + strandat 205.182 kb on - strandat 205.208 kb on - strandat 205.265 kb on - strandat 205.265 kb on - strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.325 kb on - strandat 205.341 kb on - strandat 205.417 kb on - strandat 205.485 kb on + strand, within AO353_00900at 205.485 kb on + strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.578 kb on + strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.852 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strandat 206.110 kb on - strandat 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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203,848 - +1.1
203,863 - -1.9
203,977 + +0.9
203,978 - -1.9
204,021 + -1.7
204,021 + -2.2
204,022 - -0.1
204,107 + -2.9
204,107 + -1.8
204,108 - -0.7
204,108 - -2.5
204,108 - -2.6
204,108 - -0.0
204,200 + -2.0
204,200 + -1.8
204,201 - -1.9
204,341 + AO353_00895 0.17 -1.8
204,341 + AO353_00895 0.17 -3.2
204,341 + AO353_00895 0.17 -1.4
204,341 + AO353_00895 0.17 -1.8
204,342 - AO353_00895 0.17 -2.1
204,342 - AO353_00895 0.17 -1.8
204,342 - AO353_00895 0.17 -2.3
204,342 - AO353_00895 0.17 -1.5
204,342 - AO353_00895 0.17 -1.8
204,342 - AO353_00895 0.17 -2.5
204,491 + AO353_00895 0.30 -1.5
204,491 + AO353_00895 0.30 -1.8
204,491 + AO353_00895 0.30 -1.5
204,492 - AO353_00895 0.30 -3.4
204,492 - AO353_00895 0.30 -2.7
204,731 + AO353_00895 0.51 -3.4
204,875 + AO353_00895 0.64 -0.2
204,875 + AO353_00895 0.64 -0.9
204,876 - AO353_00895 0.64 -1.4
205,076 + AO353_00895 0.82 -1.4
205,076 + AO353_00895 0.82 -2.0
205,076 + AO353_00895 0.82 -3.5
205,077 - AO353_00895 0.82 -1.2
205,077 - AO353_00895 0.82 -0.9
205,112 + AO353_00895 0.85 -1.6
205,112 + AO353_00895 0.85 -0.7
205,112 + AO353_00895 0.85 -4.0
205,124 + AO353_00895 0.86 -0.7
205,124 + AO353_00895 0.86 -1.7
205,124 + AO353_00895 0.86 -0.7
205,124 + AO353_00895 0.86 -0.7
205,124 + AO353_00895 0.86 -0.7
205,124 + AO353_00895 0.86 -1.4
205,125 - AO353_00895 0.86 -2.7
205,125 - AO353_00895 0.86 -1.4
205,125 - AO353_00895 0.86 -1.1
205,125 - AO353_00895 0.86 -1.7
205,125 - AO353_00895 0.86 -2.2
205,172 + -2.2
205,182 - -2.1
205,208 - -3.0
205,265 - -0.2
205,265 - +0.3
205,324 + -1.8
205,324 + -2.9
205,324 + -1.7
205,324 + -1.9
205,325 - -2.7
205,341 - -1.4
205,417 - -3.1
205,485 + AO353_00900 0.15 -0.5
205,485 + AO353_00900 0.15 -2.3
205,486 - AO353_00900 0.15 -1.9
205,486 - AO353_00900 0.15 -0.9
205,578 + AO353_00900 0.26 -1.8
205,579 - AO353_00900 0.26 -0.7
205,579 - AO353_00900 0.26 -1.5
205,579 - AO353_00900 0.26 -3.1
205,650 + AO353_00900 0.34 -2.2
205,650 + AO353_00900 0.34 -0.5
205,650 + AO353_00900 0.34 -0.5
205,650 + AO353_00900 0.34 -1.1
205,650 + AO353_00900 0.34 -2.5
205,650 + AO353_00900 0.34 -1.7
205,650 + AO353_00900 0.34 -3.2
205,650 + -0.2
205,651 - AO353_00900 0.34 -3.3
205,651 - AO353_00900 0.34 -2.2
205,651 - AO353_00900 0.34 -1.6
205,651 - AO353_00900 0.34 -0.5
205,651 - AO353_00900 0.34 -3.6
205,651 - AO353_00900 0.34 -1.5
205,651 - AO353_00900 0.34 -2.6
205,651 - AO353_00900 0.34 -2.2
205,651 - AO353_00900 0.34 -2.2
205,651 - AO353_00900 0.34 -0.9
205,651 - AO353_00900 0.34 -1.1
205,651 - +0.5
205,651 - AO353_00900 0.34 -2.1
205,651 - AO353_00900 0.34 -2.4
205,651 - AO353_00900 0.34 -1.8
205,670 - AO353_00900 0.36 -2.8
205,670 - AO353_00900 0.36 -1.9
205,852 + AO353_00900 0.56 -1.1
206,024 + AO353_00900 0.76 -0.9
206,024 + AO353_00900 0.76 -1.4
206,109 + AO353_00900 0.85 -0.7
206,109 + AO353_00900 0.85 -0.2
206,110 - AO353_00900 0.85 -0.9
206,110 - AO353_00900 0.85 -2.4
206,110 - AO353_00900 0.85 -1.5
206,110 - AO353_00900 0.85 -0.2
206,110 - AO353_00900 0.85 -2.4
206,110 - AO353_00900 0.85 -1.2
206,110 - AO353_00900 0.85 -1.7
206,110 - AO353_00900 0.85 -1.9
206,110 - AO353_00900 0.85 -0.5
206,110 - AO353_00900 0.85 -3.1
206,110 - -0.7
206,110 - +0.1
206,113 + AO353_00900 0.85 -2.0
206,113 + AO353_00900 0.85 -1.4
206,113 + AO353_00900 0.85 -3.2

Or see this region's nucleotide sequence