Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00880 and AO353_00885 are separated by 104 nucleotides AO353_00885 and AO353_00890 are separated by 54 nucleotides
AO353_00880: AO353_00880 - 2-methylcitrate dehydratase, at 198,525 to 200,009
_00880
AO353_00885: AO353_00885 - 3-methylitaconate isomerase, at 200,114 to 201,304
_00885
AO353_00890: AO353_00890 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 201,359 to 203,953
_00890
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.144 kb on + strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.145 kb on - strand, within AO353_00880 at 199.153 kb on + strand, within AO353_00880 at 199.153 kb on + strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.176 kb on - strand, within AO353_00880 at 199.234 kb on + strand, within AO353_00880 at 199.234 kb on + strand, within AO353_00880 at 199.235 kb on - strand, within AO353_00880 at 199.235 kb on - strand at 199.375 kb on + strand, within AO353_00880 at 199.376 kb on - strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.705 kb on + strand, within AO353_00880 at 199.706 kb on - strand, within AO353_00880 at 199.706 kb on - strand, within AO353_00880 at 199.725 kb on - strand, within AO353_00880 at 199.817 kb on + strand, within AO353_00880 at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.942 kb on + strand at 199.943 kb on - strand at 199.943 kb on - strand at 199.972 kb on + strand at 199.973 kb on - strand at 200.156 kb on + strand at 200.156 kb on + strand at 200.157 kb on - strand at 200.394 kb on - strand, within AO353_00885 at 200.394 kb on - strand, within AO353_00885 at 200.394 kb on - strand, within AO353_00885 at 200.443 kb on - strand at 200.538 kb on + strand, within AO353_00885 at 200.539 kb on - strand, within AO353_00885 at 200.921 kb on - strand, within AO353_00885 at 200.999 kb on - strand, within AO353_00885 at 200.999 kb on - strand, within AO353_00885 at 201.125 kb on - strand at 201.265 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.267 kb on + strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.268 kb on - strand at 201.293 kb on + strand at 201.293 kb on + strand at 201.293 kb on + strand at 201.294 kb on - strand at 201.304 kb on + strand at 201.305 kb on - strand at 201.305 kb on - strand at 201.305 kb on - strand at 201.314 kb on + strand at 201.315 kb on - strand at 201.360 kb on + strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.424 kb on - strand at 201.500 kb on - strand at 201.775 kb on - strand, within AO353_00890 at 201.940 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 201.982 kb on - strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.131 kb on + strand, within AO353_00890 at 202.132 kb on - strand, within AO353_00890 at 202.156 kb on - strand, within AO353_00890 at 202.156 kb on - strand, within AO353_00890 at 202.209 kb on + strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890 at 202.210 kb on - strand, within AO353_00890
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 199,144 + AO353_00880 0.42 -0.1 199,144 + AO353_00880 0.42 -0.1 199,144 + AO353_00880 0.42 -0.4 199,144 + AO353_00880 0.42 +1.1 199,144 + AO353_00880 0.42 +1.0 199,144 + AO353_00880 0.42 -0.2 199,144 + AO353_00880 0.42 -0.8 199,145 - AO353_00880 0.42 -0.0 199,145 - AO353_00880 0.42 +1.1 199,145 - AO353_00880 0.42 -0.6 199,145 - AO353_00880 0.42 +0.1 199,145 - AO353_00880 0.42 -0.9 199,145 - AO353_00880 0.42 +1.1 199,145 - AO353_00880 0.42 -0.2 199,153 + AO353_00880 0.42 -0.7 199,153 + AO353_00880 0.42 -0.4 199,176 - AO353_00880 0.44 +0.4 199,176 - AO353_00880 0.44 +0.8 199,176 - AO353_00880 0.44 +0.5 199,176 - AO353_00880 0.44 -2.9 199,176 - AO353_00880 0.44 -1.0 199,234 + AO353_00880 0.48 +0.6 199,234 + AO353_00880 0.48 +0.8 199,235 - AO353_00880 0.48 -0.1 199,235 - +0.5 199,375 + AO353_00880 0.57 +0.9 199,376 - AO353_00880 0.57 +0.2 199,705 + AO353_00880 0.79 +0.4 199,705 + AO353_00880 0.79 +1.8 199,705 + AO353_00880 0.79 +0.6 199,706 - AO353_00880 0.80 +0.2 199,706 - AO353_00880 0.80 -0.2 199,725 - AO353_00880 0.81 -0.4 199,817 + AO353_00880 0.87 -1.7 199,942 + -1.2 199,942 + -0.5 199,942 + -1.0 199,942 + -1.1 199,942 + +1.8 199,943 - +0.6 199,943 - -1.1 199,972 + +2.1 199,973 - +2.3 200,156 + -1.4 200,156 + -0.5 200,157 - -0.5 200,394 - AO353_00885 0.24 -2.9 200,394 - AO353_00885 0.24 -3.1 200,394 - AO353_00885 0.24 -1.9 200,443 - +1.1 200,538 + AO353_00885 0.36 -1.0 200,539 - AO353_00885 0.36 -0.9 200,921 - AO353_00885 0.68 -2.1 200,999 - AO353_00885 0.74 -2.4 200,999 - AO353_00885 0.74 -2.8 201,125 - -1.1 201,265 + -2.6 201,267 + -0.7 201,267 + -1.1 201,267 + +1.2 201,267 + -0.7 201,268 - -2.9 201,268 - -1.2 201,268 - -0.7 201,268 - -2.0 201,268 - -3.3 201,268 - -1.5 201,293 + -1.2 201,293 + -0.7 201,293 + -3.4 201,294 - +0.5 201,304 + -1.6 201,305 - -2.2 201,305 - -1.1 201,305 - -3.2 201,314 + -2.5 201,315 - +1.5 201,360 + -2.5 201,424 - -1.5 201,424 - -2.5 201,424 - -2.1 201,424 - -1.6 201,424 - -2.6 201,500 - -2.9 201,775 - AO353_00890 0.16 -2.6 201,940 - AO353_00890 0.22 +0.1 201,982 - AO353_00890 0.24 -1.4 201,982 - AO353_00890 0.24 -2.2 201,982 - AO353_00890 0.24 -1.6 201,982 - AO353_00890 0.24 -0.2 202,131 + AO353_00890 0.30 +0.5 202,131 + AO353_00890 0.30 -0.1 202,131 + AO353_00890 0.30 -2.4 202,132 - AO353_00890 0.30 -1.1 202,156 - AO353_00890 0.31 -2.6 202,156 - AO353_00890 0.31 -0.7 202,209 + AO353_00890 0.33 -0.6 202,210 - AO353_00890 0.33 -0.2 202,210 - AO353_00890 0.33 -0.9 202,210 - AO353_00890 0.33 -1.1
Or see this region's nucleotide sequence